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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045804 ID=TCONS_00045804|Name=TCONS_00045804|organism=Clytia hemisphaerica|type=transcript|length=1738bpRun BLAST on NCBI protein sequence of TCONS_00045804-protein >TCONS_00045804-protein ID=TCONS_00045804-protein|Name=TCONS_00045804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp MLFILLFNLIQDQWKSNFHDAEYADILKLPPQPVTSPTQPKSILKGTEQKRun BLAST on NCBI transcript from alignment at scaffold_101:114144..137400+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045804 ID=TCONS_00045804|Name=TCONS_00045804|organism=Clytia hemisphaerica|type=transcript|length=23257bp|location=Sequence derived from alignment at scaffold_101:114144..137400+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_101:114144..137400+ >TCONS_00045804 ID=TCONS_00045804|Name=TCONS_00045804|organism=Clytia hemisphaerica|type=CDS|length=18369bp|location=Sequence derived from alignment at scaffold_101:114144..137400+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045804 vs. Swiss-Prot (Human)
Match: UBP2 (Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2 PE=1 SV=2) HSP 1 Score: 311.997 bits (798), Expect = 3.689e-97 Identity = 167/339 (49.26%), Postives = 231/339 (68.14%), Query Frame = 1
Query: 505 ANSKLGVCGLENLGNTCFMNSILQCLSKDRTLREYFCDRKYKKDCKGACR----LTNAFGEFMDNIWSKSEPSYISPRSVKLEVQKLAPKFVGNHQHDSQEFLRYLIEGVHDELNVVKTKPTYSYXXXXXXXXXEKARVVWERYLSRESSLIQDLFVGQLRSTLTCSQCGHASVTFDPFWDLSLPIPIKRGDVADIAECFQTFTQEEILDGAXXXXXXXXXXXXXXXXXFLIERCPKVLVIHLKRFAGQRYRT-KLSTHVIFPT-ELDIKQYTVAKESRR-YQLFGVSNHIGGTAGGHYTAYCKHPDSGKWNLYNDTRVSPATPSSVNTAGAYVLFYEL 1500
+ S G+ GL NLGNTCFMNSILQCLS R LR+Y R Y +D L F + + IW+ S +SP K ++Q+ AP+FVG +Q D+QEFLR+L++G+H+E+N V +P + ++LD + DDEK R +W +YL RE S I DLFVGQL+S+LTC+ CG+ S FDPFWDLSLPI + + +C + FT+E++LDG EKPTC +C+ R++C KKF I+R PK+LV+HLKRF+ R RT KL+T V FP +LD++++ + Y L+ VSNH G T GGHYTAYC+ P +G+W+ +ND+ V+P + S V T+ AY+LFYEL
Sbjct: 260 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYEL 598 The following BLAST results are available for this feature:
BLAST of TCONS_00045804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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