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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004489 ID=TCONS_00004489|Name=TCONS_00004489|organism=Clytia hemisphaerica|type=transcript|length=2056bp
CTACTGCGTTCTTCTCACTTCTAAGTCCAAGTCGGTGTACGTCCAAGTCA
ACGTGAAGTGAAACACAAAGCTACAGTAGAAATCAGGGCAGACATTCAAT
CAGTTCAGAAAATAAGGAACGAAGCACAAGgATCCGGCCAATGAGGAGCG
TACCAGGCAGTAACAATGAAGGGATTTCTATTCATTTTGCTTGTGGTCTT
CATCATTTATTCACAAGCGCAAACATGTCCTGAACAATGCCAATGTTCAC
GATTGAAATGGACTTGCGGAGGACAAAACATCAATGATACTGTGTTACTT
GAAATTGCCCGTACTGGTGACCCACTTACAGCAGAAGAGTTAATACTGAA
AGTCAATTTGATTACTGATTTCCCAGCTGAAGCTTTCACCAAATTCAGCA
AGTTGGAGATTATTGAACTTGGACAAAATCTTCTGACAAAGCCACCAGCA
AATGTATCTGACTACATACCATCTGTCCACCGTTTTTCGAttgatcaaaa
caaaatcaGCAAGATTAGCAGGGATGATTTTCTCGGCTACCAAAATATCA
AGATCNAAATCAGCAAGATTAGCAGGAATGATTTTCTCGGCTACCAAAAT
ATCAAGATCCTTGACATTTTCAGCAACACTCTTACAGAGATTGAACCAAA
CATTTTTGAGAACCTACAAAACCTCCAAAAGGTCTTTGCAGAGAATAATC
AGATTGAAATGTTGAAAAACGGTACACTAAATGGTGCCGAGAACCTGCTG
TGGATTAGTTTTGATGGAAATGCTCTTGGGAAAATTGAAAGAGATGCGTT
TGCAGCGGCTACCAAGTTAGAAAGGTTATGGCTCAGTTATAATAAGCTGA
CCTCCCTCCCTGAAGGTGTGTTCCGGAACCAACGGTTAGTGATTCTGAAG
ATGAAAAGTAATCAATTTACAGACTTTCCACCAAAGACTTTCAATTCTCT
ATCCGTAGATCTTACCAACAACAGTTTGACAACGCTTCAAAAAAATTGGT
TTGCTTTGAAACCTAATGAGCTTTATCTTGAGCAGAACCCATTGCATTGT
GACTGTGCTTTATATAACACCATGCAATACTTTTTTAATGgtaatgataa
atttttaatttttgggaattGTAAAACACCAGCAGAGTTGAAGGATGATG
ATATTTACGAAGACCTTTACCGGACCAACAAACTGAAATGCACTGCTTGT
TCTTTGAATGAATGTCAGAATAATTCAACATGTAAAGTTGTCGATAAGCT
GGATTATACTTGCGTGTGCTCCGAGAAGAATCAGGGAAGATTTTGTCAGT
TCGAAAACGCATGTCTGGATAATCCTTGTCAACATAATGGAACATGTTTG
AAAATTGTAGACACCTTTATGTGCAACTGCAGTTCAGGATTTCTTGGAGA
GAAATGTGAGATTGAAAAACCTTGTTATTTCAACAATCCTTGCCAAAACA
ATGGAACATGTTTGAGAATTGTAGACACTTTTATGTGCAACTGCAGTTCA
GGATTTCTTGGAGAGAAATGTGAAATTGAAAAAGCTTGTTATTTCAACAA
TCCTTGCCAAAACAATGGAACTTGCCAACCTTTGGATGAAACTTCAGATA
AATATCAATGTTTGTGTGTCGGTGGATATTCAGGACAAAACTGTGAGATC
TTGGGAGAAgagacaaaaatcaaaattggttACATCATTCTGATCATTTT
AGTTGCGTTGGCTTTGATTGCTTTATTGCTGGTCATTTTGTATTTGAGAC
GACGAACAACAAAAAAAGCTGAGATAACCGAGGATACTCCTTTGAAATCT
ACACAAAATACTTGATCGAGGTGATTTAATGAACAAAAAACTCACTGCCA
TAGATTTTTACATgcatcaaatataaacaaaaagtgaaaaataaagtaac
aaaaagcattttttatcatttattttttaattaacatTGGTTTGGATTTT
ATTTCTTATATTGGTTACTATTATTGAAGGCATTAGAATTTGAGTTGCCT
ATTATTTCCACTAATTTCGGAACAATATTCATGATTATAGTTTCGAAAGC
TCTTTG Run BLAST on NCBI transcript from alignment at sc0000045:310425..320585+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004489 ID=TCONS_00004489|Name=TCONS_00004489|organism=Clytia hemisphaerica|type=transcript|length=10161bp|location=Sequence derived from alignment at sc0000045:310425..320585+ (Clytia hemisphaerica)
CTACTGCGTTCTTCTCACTTCTAAGTCCAAGTCGGTGTACGTCCAAGTCA
ACGTGAAGTGAAACACAAAGCTACAGTAGAAATCAGGGCAGACATTCAAT
CAGTTCAGAAAATAAGGAACGAAGCACAAGGTAACAGTTTATTTTGTTTC
TATTGATAGCAAAATTAGAGACACTAAAATTCTCTCTgtgtaactttaaa
aaaattacattgagGGCAAACCCTTATAGCTTTTTAGGACCCATGACATC
TTTTACAGTGAAGTCgggcaacttgcatcagtggagggaaacttgcatag
ccatcaaatggcTAACCAAtctaagcagcaaaatttcaaaacaaatcaac
taCGCAGTTCCGCTctcgctcgcagctctactttaccatttttgttttga
tttaactttgtaccgtcaactgctctaaataAAATGGAGCATTcggtcaa
aacatgggatgggactgttgatatctggcctgtatttttactataaatat
aaaaactagattgtaaggatgattctaaaaaagaatagccgtTTTTTTAG
ACGACTACGTTATAATTAGTTTTCGGTTTataattgaatttgaaattcgt
caaaattttaaattgggTCAATTGGactttgcttgtgacgtcagtttttg
aGTCCTAAAAGATTTTCCTAGGCCTTAGCAAAAACCCCACTTCGCAAAAA
ACTCTTTAAATACTTCAGTCTTTGAAATTGACCAGGTTTGGTCGCGTtgc
ataaaagatgtcacggcAGGTCCTAAGGGTTTGTCCCTTACTATATATTA
TAGTGTTCATAAtggagatgaaatttggtagCTATATGGAGTCTCCTTGT
AACAAGTCAAAAGTAGAAGAAacaagttttttgatacatcaacCTGGTCA
GAAGTTCTGGGACACTTTCATTATTGGAATATCCTAACCTCATTGGGTTG
GGATCTCTCTAATCAAGATATTCTGGATCAAAAGGAAAAGGAACTTAAAA
TTTAACAGAATGGACCATCGTTTTGCATAATTCCGCTTACGATACTGCAA
TTCCACTGGGTCGTTAATAAAGAATGGAAATAACTCTTGTCTaatgctca
ttccgacattttaaattttccgggggttttgctgtttgggattgtttagg
tcagggttgctagtaacggcttttTTCAGCCCCGGGTGCATTTACAGCGA
CCTGGGCCCCGCCCGGTTGCTTGTAACGGCGCCGAAGTTGCAGCTTGGGT
AAAAANTTTGCTGTTTGGGATTgtttaggtcagggttgctagtaacggct
tgtcactgtgccgggtgcatactcggcgccctgagccccgcagggttgct
agtaacggctcgaatttcagtcaggttaaaaaaggggcaattttacccat
attataatagcATTACCCCCGTCTTCTTATTCATtcaataagtatttcca
aattttgtgttctgctgtgcgagtgtggctcaacggatagcgcgctgggt
ttctgatcagaaactctttcatttggtggNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCagttaaaacactttaaaatagtcagaaaacatagtaaata
agtCAGAAAGGTCACCAGGGGGTCAGAAAAGAGCCTCAGAGAAGATAGGC
AGAAATGAGAAGTCGATGTCGGAACGAGCAATAGACAAGAGTTCTTTCCA
TAAAGAATAGCTTGCTTTGTTCCTGTCACCCCGACTTTGAAAAAGACAat
cggtcggtcggtcagtTGGTCAGGGTAAataaaattgtatcataaatTAA
CAGCAGGACTTAGGTCAGCATTTgcatccgccatcttgtttttacGTTAC
TTTGAAAATAGCACTCGGTTTCATTAAGTAAAGTATTTCCGCTTGTTCCA
AATAATGAAAAACAGGAGAAAAAATCTGTATACTGTATACAAACTGGAAT
TCAGGCTGAGTTTGAACAAAAGTCTGCTCAAGCACCTTTAACTACGCtac
attttcaaaattggtaAACAGGGGAGAGTGATGTTGAGGCTCCAACCACC
AGATTGGCTTCTAttaattgtaaaaaaatgagatGAGGCCTGCAGATTAG
GCCTGGGAAAAGTTTCTATGGccaaaaaatagatttttgaagcaAAGCTC
CTCCTTTGGGGTTGCCCAAAGGAGGTTATTTGTTTACTCTCCAGACTTAC
CAAATCAGGTTACAACTTTCAATCCCATGTTGAAAATTGATTGTTTTAAA
ATTGTGAGATTTTCATTATATTATGCATGTcagcaatttttttgttttta
attgcACTTTAATGTCTtcaaaagctttgcaaaagtttgttattttttct
ttcagtcgTTTGTCAAACAATGCGAAAGTGACGTTTTTGTTTCTTGGGCT
TCAGACCTAATATGTTGGATCTATAACTTCAAAAGTTGGGCTTTGTATTT
GTCTTGGGCTTGGTATTTATTATAAATCAAATAGAGAAAGATTGTGTCAA
CTCTAGGGCTGCCTAGGGTACCAACACTAACAGGTTTTAAATAGTGACTA
TCTTGAGTGCCAGGCAACTCAGGACCACTAAAAAAGGCAGACTAGGGGTG
GTGTCAGACTGGCAATAGTCAAATACACTTAGTACATTTAGGTACTAACT
GTTGAAGGGTGGTGGGTGTActtttaaatttacaattttgtaGTAAGTCA
TCATGATGTCTTGTACCAACTACATGACCCCCTGATATTATAGAGGAGTT
TAATTTTGATCTGTGATTCTTTATTCAAATTCAATGCGTAGTCACTCAAC
ATTAGGTCTCCAAATTTCAAATGAGATGTATGATGTATTGGTTATTATTG
GGTATCAGtgatttcaaaattatattttttggtcATCTCATAGCtgtaat
gaattttttttttctttgtaggtaacaaaaggttttaaaaatttacctat
tttcttatttatataaTGCACAATTAAACATCCATTGTTCCCAGAAGCTG
ATATTACTATGTACAATGAATAAATTTCTGAAGAATTCATTTTTAACAGT
TATTGGGATACTATTAGTGCTCTTTACCACTTGtcaatcatgtccaaaac
aatGTGATTGCTCACAGTTTAAATGGAAATGCAGTGCCCAAAATATCACT
GATGCAATATTATTAAGAGACATTGCCAATGTTAGTAACCCATGGACAGC
AAAAGGGTTGATATTGAAAGACAATTTAATCACTCATTTCCCATCAGaat
attttgtcaattttacaaATTTGACTGAAATTGACCTTACAAGAAATTTA
CTAACAAAACCTCCAGCAAACTTATCTGTTTACATTCCATCAATTGTTAA
CTTATGCATCAGTGAAAATATAATCAGGGAAATAACCAAAGATGATTTTA
TGGGATATCAAAATGTTAAAGAGGTAAACATTTCAAACAACATAATTATG
GAACTGGAATCTGGTATTTTTAGCAACTTACCAAAATTACAAAAGGTTTT
CATAGATAACAATtctataaaacttttgaaaaatggggtCCTTGATGATG
CTATGGAACTTCTTTGGATCAGTTTTAATGGGAATGGAATTGAGAAAATT
GAAAAGGATGTCTTTAAATTACATGTGAAGTTAGATAGACTGTGGTTCAA
TAACAATAACTTGAGTGAACTTCCCGAGGGTCTACTAAAAAACCAACACT
TGAATCGTTTGGAAATGCAAAATAACCAATTTACAGACTTTCCAGCAAAT
GCTTTCAATTCGCAATTAGTAAAACTACTGAATAATAGATTGACAACACT
TCGAAAAGAATGGTTTCTTTCCTCGCCAGATGATCTTGATGTTGAAGGAA
ACCCATTACATTGTGACTGCACATTGTACAATGTTATACAAGCTCTTATC
TCTGATAACAACAAATTCGATATATTTGGTAATTGTCGATCACCGCCACA
TGTGAAAGATATTTATGAGGACATTCAGACTAGAAACAAGCTGAATTGCA
CTGCCTGTTCTGTGAATAATTGTCAGAACAATTCAACATGTCAAATCATA
AACGAGACATCATACAATTGCTCCTGTTCTGATGAATTTCAAGGAAGATT
TTGTCAGTATGAGAATCAATGTCTACAAAGTCCTTGTGGAAATAATGGAA
CATGTTTGCTGTCTAATGATTCATTTGTTTGTAGTTGTATGAACGAGTTT
GGGGGAACGAGATGTCACTTAATCCAATTATGTTACTCGGATAAACCATG
CGAGAATTCAGGGCAGTGTAATGTTCACAAGGGGACTACCATGAACACTT
GTACTTGCTTGTTCGGTTATTTGGGGTCACGTTGTCAAATAAATTTGGGT
TTCATTGTGTtggtttgtttgattgtttttgcaACTCTGATTGTGGTTTG
TATTCTTTGTTTTTACAAACCAAAACACGGTGATATATTCATTGTTGAAA
AAGGACATTTACTATCAAAGATTGGTGTTGATAATCCAAGTTTCAGATAT
TCTGGCCAAAGTAGTACATCACAAAATTAAAGATACCTGAAGATAAGGTt
ttatttcactgaagattgccattctggatggcatgaaactttgagtataa
AATTAAACTAAATCGTTTTCTTCACTCAAACTAGGATACCTGACAGTACC
TGAAGATATTcataaagtaaaaaatatttatttattttattttattttat
tatttaaattttttttaatgagagATTTGAATTTTCTCTTGCCTCGTTTC
CAAACTTGAGCATTTTTATTAATAATAATGCTATACAAGTGAACCGCTCT
TTGTttggtttacaattttcttaagatagagttttctcctagggctcccc
ctgactttgaatttgaagtttGCGTCTTTTATATTGAAGTATTCATTTGT
TTGGCTTTCATACACCACTCTTTAATTgtcttcctttcacttttcACTTA
GTCTTCTGCTACCCGGAAGGGCAATCTTACTCCTTTGTGATTGCTCTTAA
CAGTATTCTTGTCTTCTTCGTTTGCAAATCGGAATTTTATTGGTCGATAG
CGTTTCTCATCTCCTCTTTCCTTCCaaaattttccgattctttgagtttt
ttcattttcattctttATATTCCTTAAGCGTCATACCTaagatgttttca
ttttttgatattCTTCGTCGTAGATTTTGGCGACTGCTGCGTAGCTTTCT
TTTCAATGCTGTCTTCCATTTTCTTTTCTATTGTTGCCATTCTGATATCA
AAACTATCCTTCATTTCACTGATCTTAGTATTCACGTCTTTGAACTTTAG
TTGAGTGATTTCTACGTCCTGGGCTTTCATTATGTTTTTGTAAGCTTTTA
TCTCCTTTCGGAATCCTGAAACTGTTGATGTCTCATGTGAATTGACTCAT
TCTAATAGATCAGGAGTGATCACGACACAGTTTTGACAAATGAATGCTCT
CGATTTGTATGCTAGACATAACTGGATTTGATAGATGGGGAGCTTTGAAC
AAATGTAGTGCACGATTCGATTGCACTTCTTACATTCAAGTGTGTCTTTG
GATCTTCCTTCTTCACTTGTAATACATTCAGATGGGCTGCAAAGGTCGTA
AATTGATGCTTGATTCGGtagtttttgtagattttcctgaattttctccT
ATATTTACATCTTTTTACAACACATCTGTTTTATTGATtcgtttttattg
aatagttttatttattttataatatatttatTGTTTATATCTTCCATTTG
GTCATTTGAATCAcataattgtacaaaaagtaTTATTTAATGTTTCGACA
TTTTACTCCCATACTCTCAGATGTCTTATAAATTGGCCCTGTGTTTGTGA
TTCATAcaaatgttatacatatttcCCTTGTCAAtctttgacaatttttt
cagcTGTTAAAACACCATTTAAGTACTTTATTTTGCTCTATATAGCCTGG
TTATTTACTTAATTTAGGGTATTCACTATAGTAAAATACAAGCCCCCCTc
attaatacacgttttttttttattagaacctagtttataagaacatatag
gctgaaattcgtcgaaaaattaagaacatcttaagaacatgcccagcctc
agtttggataaaaatgacaagaaattacaattttttcctctttttaagca
gttttaaccgaatttaggggtggatcttcaaaagtcgagagtcaaatatt
gtccaaattttgccaaatttaagtgctctttatttcatattattatcata
ttgtcgatttagagtagtctgaaaaattaagaacgcgtttaagaacattt
taggctgaaagttgctaaaaaaataagcacatccaggctcagccaaattt
taggtgttctaataaaaaaaaaaacgtgtaaagacATCCCATCCCCGTtc
attaaaatttagaaaagttttcttaaccctacctactgagagggggggca
caaagtgccccccctgttagaaaattggctggcattttttaactagtgag
gctatgaagctgaaattttatgacttttcatcaaattttatggggaatgt
tttgtgtaaaaattttttctcattggtcaattattttagtcccaatgaca
ggtttgtcggtgaccactaccatcccacaactgcagcgcaggctattttg
ctcttttttatgtgCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTagca
gcaaaaaataaatataaatatgacaaaaaaaagtatcaccgacttgaaaa
agttaaaatgttctgattttacgcggttttgaaaatttaaaacattttct
tcggtTTTGGCGCGCTATAGTTGAACGTCAcgacaaaattgttgatttag
attttaGTTTCCATTTAGTACTttgtaaaagctttcaaataaaagcaaaa
tgaaggaGAATGTGTTTCTCAGTCTGTTTCAAtagcaattttaagaaaca
tcattttttttgagttttttgggtgatttttgccaattgttgatacaatt
gatgacgtcatcaaaaatcgcaatcaattttcaaaaaaattttttaataa
atttatttgTTATAGGTTCAAGCattgctgtaccaaatttcatgaccaaa
taatgttcctatcctaagttatccacggggggcactatgtgccccccctt
tcagttctaagggacccaaatagctctcagtaggtagggttaatCCCCCA
TTTAATCTAACCCCTCCAATTGTTAGGCACTTCTGTAATgagtaatattt
tattttttcatgattgtCTCTGTTTGGAGGAATTTGGGAATTTTACATGG
TACCTGAAATACATATATTTATATGATAGAAATGTTCGTTATATTCACTT
TCtgaatgataaaatttttattttttgaaaaaatctaagaaaaatgTCAT
TCTTATCACACCCTAAAGCTCTTTTATCAGCTCTTTATTATCAGTCAATG
AAATTACAAATAcaaattacttttgatagaatttgactGAGTTGGTGATT
TCATGCTTGTTGTTAAGATAATAATGAGTGGAATATTGTTGGCAAATTTG
GACGGAACTTCAACTAACCTTATTAATTTTAATTAGCCAATCAGCAAAAC
CCATCTGCGTTTGGAACTGTTTTGAAATAAGAATACCTTTCATCTTGATA
TAAGGAGATTTCTTTTCAATCCAATAAGTTATAGGGCTTTACGAATCAAT
TAGACCAAATTAAATACTGGTGCTCTTAGCTCGAACATTTTTTCTGAACG
AGTTGAATACGAAGGAGTAGTACCCTACAAGCACTGTTaacaaatttctg
aaaattccAAATCTTCCTTGAAATATTTAAAGTCTGTCTAGAGTGCAACC
AGTCAGCTAATACCgtctatttttctttaatttaggATCCGGCCAATGAG
GAGCGTACCAGGCAGTAACAATGAAGGGATTTCTATTCATTTTGCTTGTG
GTCTTCATCATTTATTCACAAGCGCAAACATGTCCTGAACAATGCCAATG
TTCACGATTGAAATGGACTTGCGGAGGACAAAACATCAATGATACTGTGT
TACTTGAAATTGCCCGTACTGGTGACCCACTTACAGCAGAAGAGTTAATA
CTGAAAGTCAATTTGATTACTGATTTCCCAGCTGAAGCTTTCACCAAATT
CAGCAAGTTGGAGATTATTGAACTTGGACAAAATCTTCTGACAAAGCCAC
CAGCAAATGTATCTGACTACATACCATCTGTCCACCGTTTTTCGAttgat
caaaacaaaatcaGCAAGATTAGCAGGGATGATTTTCTCGGCTACCAAAA
TATCAAGATCNAAATCAGCAAGATTAGCAGGAATGATTTTCTCGGCTACC
AAAATATCAAGATCCTTGACATTTTCAGCAACACTCTTACAGAGATTGAA
CCAAACATTTTTGAGAACCTACAAAACCTCCAAAAGGTCTTTGCAGAGAA
TAATCAGATTGAAATGTTGAAAAACGGTACACTAAATGGTGCCGAGAACC
TGCTGTGGATTAGTTTTGATGGAAATGCTCTTGGGAAAATTGAAAGAGAT
GCGTTTGCAGCGGCTACCAAGTTAGAAAGGTTATGGCTCAGTTATAATAA
GCTGACCTCCCTCCCTGAAGGTGTGTTCCGGAACCAACGGTTAGTGATTC
TGAAGATGAAAAGTAATCAATTTACAGACTTTCCACCAAAGACTTTCAAT
TCTCTATCCGTAGATCTTACCAACAACAGTTTGACAACGCTTCAAAAAAA
TTGGTTTGCTTTGAAACCTAATGAGCTTTATCTTGAGCAGAACCCATTGC
ATTGTGACTGTGCTTTATATAACACCATGCAATACTTTTTTAATGgtaat
gataaatttttaatttttgggaattGTAAAACACCAGCAGAGTTGAAGGA
TGATGATATTTACGAAGACCTTTACCGGACCAACAAACTGAAATGCACTG
CTTGTTCTTTGAATGAATGTCAGAATAATTCAACATGTAAAGTTGTCGAT
AAGCTGGATTATACTTGCGTGTGCTCCGAGAAGAATCAGGGAAGATTTTG
TCAGTTCGAAAACGCATGTCTGGATAATCCTTGTCAACATAATGGAACAT
GTTTGAAAATTGTAGACACCTTTATGTGCAACTGCAGTTCAGGATTTCTT
GGAGAGAAATGTGAGATTGAAAAACCTTGTTATTTCAACAATCCTTGCCA
AAACAATGGAACATGTTTGAGAATTGTAGACACTTTTATGTGCAACTGCA
GTTCAGGATTTCTTGGAGAGAAATGTGAAATTGAAAAAGCTTGTTATTTC
AACAATCCTTGCCAAAACAATGGAACTTGCCAACCTTTGGATGAAACTTC
AGATAAATATCAATGTTTGTGTGTCGGTGGATATTCAGGACAAAACTGTG
AGATCTTGGGAGAAgagacaaaaatcaaaattggttACATCATTCTGATC
ATTTTAGTTGCGTTGGCTTTGATTGCTTTATTGCTGGTCATTTTGTATTT
GAGACGACGAACAACAAAAAAAGCTGAGATAACCGAGGATACTCCTTTGA
AATCTACACAAAATACTTGATCGAGGTGATTTAATGAACAAAAAACTCAC
TGCCATAGATTTTTACATgcatcaaatataaacaaaaagtgaaaaataaa
gtaacaaaaagcattttttatcatttattttttaattaacatTGGTTTGG
ATTTTATTTCTTATATTGGTTACTATTATTGAAGGCATTAGAATTTGAGT
TGCCTATTATTTCCACTAATTTCGGAACAATATTCATGATTATAGTTTCG
AAAGCTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004489-exon-sc0000045-1491911889:310425..310554 | TCONS_00004489-exon-sc0000045-1491911889:310425..310554 | Clytia hemisphaerica | exon |
| TCONS_00004489-exon-sc0000045-1510915933:310425..310554 | TCONS_00004489-exon-sc0000045-1510915933:310425..310554 | Clytia hemisphaerica | exon |
| TCONS_00004489-exon-sc0000045-1575043694:310425..310554 | TCONS_00004489-exon-sc0000045-1575043694:310425..310554 | Clytia hemisphaerica | exon |
| TCONS_00004489-exon-sc0000045-1491911889:318660..320585 | TCONS_00004489-exon-sc0000045-1491911889:318660..320585 | Clytia hemisphaerica | exon |
| TCONS_00004489-exon-sc0000045-1510915933:318660..320585 | TCONS_00004489-exon-sc0000045-1510915933:318660..320585 | Clytia hemisphaerica | exon |
| TCONS_00004489-exon-sc0000045-1575043694:318660..320585 | TCONS_00004489-exon-sc0000045-1575043694:318660..320585 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:310425..320585 + |
Blast
BLAST of TCONS_00004489 vs. Swiss-Prot (Human)
Match: SLIT3 (Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3) HSP 1 Score: 142.51 bits (358), Expect = 6.817e-35 Identity = 104/344 (30.23%), Postives = 156/344 (45.35%), Query Frame = 1
Query: 667 QNLQKVFAENNQIEMLKNGTLNGAENLLWISFDGNALGKIERDAFAAATKLERLWLSYNKLTSLPEGVFRNQR-LVILKMKSNQFTDFPPKTFNSLSVDLTNNSLTTLQKNWFALKPNELYLEQNPLHCDCALYNTMQYFFNGNDKFLIFGNCKTPAELKDDDIYEDLYRTNK----------LKCTACSLNECQNNSTCKVVDKLDYTCVCSEKNQGRFCQFE-NACLDNPCQHNGTCL---KIVDTFMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLRIVDTFMCNCSSGFLGEKCE--IEKACYFNNPCQNNGTCQPLDETSDKYQCLCVGGYSGQNCE 1647
+++ +++ E N + + L+ +L I N++ + F+ + L L LSYN+L +P F R L +L + N + P +FN DLT+ S L L NPLHCDC+L ++ G + I C +P + D + + KC AC + C+NN TC Y C C +G+ C N C+ NPCQH GTC D F C+C GF G++CEI +N C+NN TC+ ++ ++C C + GE C+ I+ N CQ+ C PLD+ + C CV GYSG+ CE
Sbjct: 752 KDVTELYLEGNHLTAVPR-ELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFN----DLTSLS--------------HLALGTNPLHCDCSLRWLSEWVKAGYKEPGI-ARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDK---GFSCECVPGYSGKLCE 1072 HSP 2 Score: 82.8037 bits (203), Expect = 3.698e-16 Identity = 91/410 (22.20%), Postives = 160/410 (39.02%), Query Frame = 1
Query: 580 DFLGYQNIKILDIFSNTLTEIEPNIFENLQNLQKVFAENNQIEMLKNGTLNGAENLLWISFDGNALGKIERDAFAAATKLERLWLSYNKLT------------------------SLPEGVFRNQRLVILKMKSNQFTDFPPKTFNSLSVDLTNNSLTTLQKN--WFALKPNELYLEQNPLHCDCALYNTMQYFFNGNDKFLIFGNC-KTPAELKD----DDIYEDLYRTN----------KLKCTACSLNECQNNSTCKVVDKLD-YTCVCSEKNQGRFC-QFENACLD--NPCQHNGTCLKIVDTFMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLRIVDTFMCNCSSGFLGEKCEIEKACYF--NNP-----CQNNGTCQPLDETSDKYQCLCVGGYSGQNCEIL 1653
+ +++ ++D+ +N+++ + F N+ +L + N++ + NG +L ++ GN + + +F T L L L N L S PE + ++L +++F P N V N L++ KN P ELY C C Y + G D + C + P + D ++D + + ++ C N+C+NN+TC VD ++ Y C+C G C + + C+ N CQH C+ + F C C G+ G+ CE + + C++ C+ ++ + C C GF G CE +P CQN C + + + C C G++G CE L
Sbjct: 770 ELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADR---LLLTTPTHRFQCKGPVDINI--VAKCNACLSSPCKNNGTCTQDPVELY------RCACP------YSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATC--VDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDKGFSCECVPGYSGKLCETDNDDCVAHKCRHGAQCVDTINGYTCTCPQGFSGPFCEHPPPMVLLQTSPCDQYECQNGAQCIVVQQ---EPTCRCPPGFAGPRCEKL 1157
The following BLAST results are available for this feature:
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