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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004585 ID=TCONS_00004585|Name=TCONS_00004585|organism=Clytia hemisphaerica|type=transcript|length=1074bp
TTCAAACtggaaacaaaaaatatcaagagACTGCAATGAGAATGAAAGCT
TCGATAAGAGCTTTTGAGTAACAAAGATAACAACACATTTTGATTATTCC
ACCTTTTATCTATAATATTCAGCTGTAAAATGGAAAACTGTGTATGAAAG
AATCTTTTCAATTCCAGAAAGCATCAAAGCACGCCGTTCTTCATTTTTAC
GATACCATATTGAATGATATTATAAGATAATATTAAAAAAGAGCATACGT
ATCACTCTAGGATATTCCTTCGTGTGAAATTTCTATAATAATAAAAACAG
TCTCACAGCGTGAAAAAGATTTCACACGATTTCTTCTTCACTGTCAGCGA
AAAGGTCTCGCTGGTTCAAATCCATTTAAAGTATCAATCACCACGCTCTT
CACGTTCAATCGAGTCTCGTGATCGAAATCTTGAGTTCTTCCAACATTCA
AACAGTCATTTCCATAGTAACGAAACAAATATCCTAGAGGATCGATCGGT
ACCGTAAAATTAAAATCTCCAAACAACCTTTGCTTGAAAGATGATACTTC
CTCTTGCTCGTAAAATTCCCTCTGCCATAGATCACGCGCCGATTGATGTT
TTAATTCTATTCGACCGTTTTTACGATTATGGCGCATAATTGTGATATCA
CAACAAGGGATTCCAAAGTTCGATGCTGCTGTCCGTTTCGATTCAAGCTC
ATGAAATAACCGATATCCGAAAAAGCTTTCCATTAACACAAGTCCATTAT
TATGGAGAATATCACGTATTTGTAAAAGTTTCTGTTCGTTTATCTCCATA
ATACTAATATCAATATCATCATCCCATGGAATCAAACCTTTGTGTCGAAC
ACATCCTAAAAGCGTTCCACCAGTAACCCAGTAAGCGATACCATGCTCTT
CAAACAATTTCGAAATCAAACGCCCCAAGAAGTATAACCGGCGTACTGTC
ACTGCATCAGTTTGTGTTTTGGGTGTATGTTTTGGCACAGTGTGTCGGTC
TTCGTCAAAGAAACTGCCGAGgagatcttcattttcattttcaagttgCT
GGtcgttcatttttttgttttcta Run BLAST on NCBI protein sequence of TCONS_00004585-protein >TCONS_00004585-protein ID=TCONS_00004585-protein|Name=TCONS_00004585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
ENKKMNDQQLENENEDLLGSFFDEDRHTVPKHTPKTQTDAVTVRRLYFLG
RLISKLFEEHGIAYWVTGGTLLGCVRHKGLIPWDDDIDISIMEINEQKLL
QIRDILHNNGLVLMESFFGYRLFHELESKRTAASNFGIPCCDITIMRHNR
KNGRIELKHQSARDLWQREFYEQEEVSSFKQRLFGDFNFTVPIDPLGYLF
RYYGNDCLNVGRTQDFDHETRLNVKSVVIDTLNGFEPARPFR Run BLAST on NCBI transcript from alignment at sc0000045:304806..305879 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004585 ID=TCONS_00004585|Name=TCONS_00004585|organism=Clytia hemisphaerica|type=transcript|length=1074bp|location=Sequence derived from alignment at sc0000045:304806..305879 (Clytia hemisphaerica)
tagaaaacaaaaaaatgaacgaCCAGcaacttgaaaatgaaaatgaagat
ctcCTCGGCAGTTTCTTTGACGAAGACCGACACACTGTGCCAAAACATAC
ACCCAAAACACAAACTGATGCAGTGACAGTACGCCGGTTATACTTCTTGG
GGCGTTTGATTTCGAAATTGTTTGAAGAGCATGGTATCGCTTACTGGGTT
ACTGGTGGAACGCTTTTAGGATGTGTTCGACACAAAGGTTTGATTCCATG
GGATGATGATATTGATATTAGTATTATGGAGATAAACGAACAGAAACTTT
TACAAATACGTGATATTCTCCATAATAATGGACTTGTGTTAATGGAAAGC
TTTTTCGGATATCGGTTATTTCATGAGCTTGAATCGAAACGGACAGCAGC
ATCGAACTTTGGAATCCCTTGTTGTGATATCACAATTATGCGCCATAATC
GTAAAAACGGTCGAATAGAATTAAAACATCAATCGGCGCGTGATCTATGG
CAGAGGGAATTTTACGAGCAAGAGGAAGTATCATCTTTCAAGCAAAGGTT
GTTTGGAGATTTTAATTTTACGGTACCGATCGATCCTCTAGGATATTTGT
TTCGTTACTATGGAAATGACTGTTTGAATGTTGGAAGAACTCAAGATTTC
GATCACGAGACTCGATTGAACGTGAAGAGCGTGGTGATTGATACTTTAAA
TGGATTTGAACCAGCGAGACCTTTTCGCTGACAGTGAAGAAGAAATCGTG
TGAAATCTTTTTCACGCTGTGAGACTGTTTTTATTATTATAGAAATTTCA
CACGAAGGAATATCCTAGAGTGATACGTATGCTCTTTTTTAATATTATCT
TATAATATCATTCAATATGGTATCGTAAAAATGAAGAACGGCGTGCTTTG
ATGCTTTCTGGAATTGAAAAGATTCTTTCATACACAGTTTTCCATTTTAC
AGCTGAATATTATAGATAAAAGGTGGAATAATCAAAATGTGTTGTTATCT
TTGTTACTCAAAAGCTCTTATCGAAGCTTTCATTCTCATTGCAGTctctt
gatattttttgtttccaGTTTGAA Coding sequence (CDS) from alignment at sc0000045:304806..305879 >TCONS_00004585 ID=TCONS_00004585|Name=TCONS_00004585|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at sc0000045:304806..305879 (Clytia hemisphaerica)
gaaaacaaaaaaatgaacgaCCAGcaacttgaaaatgaaaatgaagatct
cCTCGGCAGTTTCTTTGACGAAGACCGACACACTGTGCCAAAACATACAC
CCAAAACACAAACTGATGCAGTGACAGTACGCCGGTTATACTTCTTGGGG
CGTTTGATTTCGAAATTGTTTGAAGAGCATGGTATCGCTTACTGGGTTAC
TGGTGGAACGCTTTTAGGATGTGTTCGACACAAAGGTTTGATTCCATGGG
ATGATGATATTGATATTAGTATTATGGAGATAAACGAACAGAAACTTTTA
CAAATACGTGATATTCTCCATAATAATGGACTTGTGTTAATGGAAAGCTT
TTTCGGATATCGGTTATTTCATGAGCTTGAATCGAAACGGACAGCAGCAT
CGAACTTTGGAATCCCTTGTTGTGATATCACAATTATGCGCCATAATCGT
AAAAACGGTCGAATAGAATTAAAACATCAATCGGCGCGTGATCTATGGCA
GAGGGAATTTTACGAGCAAGAGGAAGTATCATCTTTCAAGCAAAGGTTGT
TTGGAGATTTTAATTTTACGGTACCGATCGATCCTCTAGGATATTTGTTT
CGTTACTATGGAAATGACTGTTTGAATGTTGGAAGAACTCAAGATTTCGA
TCACGAGACTCGATTGAACGTGAAGAGCGTGGTGATTGATACTTTAAATG
GATTTGAACCAGCGAGACCTTTTCGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004585-exon-sc0000045-1491911889:304806..305879 | TCONS_00004585-exon-sc0000045-1491911889:304806..305879 | Clytia hemisphaerica | exon |
| TCONS_00004585-exon-sc0000045-1510915933:304806..305879 | TCONS_00004585-exon-sc0000045-1510915933:304806..305879 | Clytia hemisphaerica | exon |
| TCONS_00004585-exon-sc0000045-1575043694:304806..305879 | TCONS_00004585-exon-sc0000045-1575043694:304806..305879 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:304806..305879 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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