TCONS_00045791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045791
Unique NameTCONS_00045791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045791 ID=TCONS_00045791|Name=TCONS_00045791|organism=Clytia hemisphaerica|type=transcript|length=305bp
CACCAATGAAATTTAACAAAGAAAACACAATCCATATATATGAAACCCTT
ACTACCCTTGAAGACACTCCTCAACTTCGAAAAGGATCGTCTATGAACTA
TATCATGATACAAGAGGACGATTATTTTAACCCCCTGTTTTTTGAATTGG
TTATTCAACAAGTAAACCGTATATTATGTGAAATGAACTAGACTAtttct
cgctaattcgaattttcattaattcgAACCAATTGTTATAAGTTCCCGTT
AAGTGTAAACCCTTGTAAAATACTATATTTCGAACTTCGAACAAATTGAA
CTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_100:729491..729795

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045791 ID=TCONS_00045791|Name=TCONS_00045791|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at scaffold_100:729491..729795 (Clytia hemisphaerica)
GGAAGTTCAATTTGTTCGAAGTTCGAAATATAGTATTTTACAAGGGTTTA
CACTTAACGGGAACTTATAACAATTGGTTcgaattaatgaaaattcgaat
tagcgagaaaTAGTCTAGTTCATTTCACATAATATACGGTTTACTTGTTG
AATAACCAATTCAAAAAACAGGGGGTTAAAATAATCGTCCTCTTGTATCA
TGATATAGTTCATAGACGATCCTTTTCGAAGTTGAGGAGTGTCTTCAAGG
GTAGTAAGGGTTTCATATATATGGATTGTGTTTTCTTTGTTAAATTTCAT
TGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029268XLOC_029268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045791-exon-scaffold_100-1491911889:729491..729795TCONS_00045791-exon-scaffold_100-1491911889:729491..729795Clytia hemisphaericaexon
TCONS_00045791-exon-scaffold_100-1510915933:729491..729795TCONS_00045791-exon-scaffold_100-1510915933:729491..729795Clytia hemisphaericaexon
TCONS_00045791-exon-scaffold_100-1575043694:729491..729795TCONS_00045791-exon-scaffold_100-1575043694:729491..729795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:729491..729795 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.549519	3.22968	0	0	0.995961	0.787022	1.42426	0.888918	0.311176	3.11226	2.75378	0.491863	4.48089	2.02409	1.18722	3.72336	1.16511	2.38908	4.01402	0.821533	0.938837	0	1.15904	2.15145	0	0	3.65896	2.31259	4.96416	4.67693
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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