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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045788 ID=TCONS_00045788|Name=TCONS_00045788|organism=Clytia hemisphaerica|type=transcript|length=1661bp
NTTTTAACCGAACATTAAATTTTCTCTTGTTGAAATTGcttgaaaacatt
gaaatatctagaaaatattcaaatttatagTGATATCTTTGGGCTTTTCA
TTGTCGTTATTATCACCACACTGGGTACAAGACTTTTTCGAATCACCTCC
TTGGACAAACGATTTAGGCTGTTGAGCGTCACTTGAACGGCACATCAATA
TCATTTTTTTAAGAGTTTGTTGTGCGAATTTGAGCAAACTACAAGGTGAC
TTAACTTCAACAGCATTAAGTTTTCGTGGAACATAAGAgcattttcgaga
aatttcttGGATTTGTCTTCGAGTTTGATGGCCATACGGTCGACAAAGCT
TTGGAGAAAAATTCACCAGTGCAACTTGGCTTACCAGAATTTTACCGACG
ACACATGATAGGTGAACCAAGCATCAAAGATGGAACAGTGAGAACATATC
CAAGAGTCTTTTCACCAGGAACAAATCATTATTCATGGCCGAAAGCTTCC
ACCATTCTTGGCATCGGTGATTCTAATAACATTCACATTCAAGTTGACAG
CAAAGCTCGTCAAGATATTGAAACTCTGGAGAAGGAATTGGATTATGCAT
TGGAACATAAGATTGCAGTGTTCATGGTTGTGGCAGTGATTGGTTCAACA
GAAGAAAGTGCTGTGGATGATATCGCAAGAATCTTGGCTCTCAAACCAAA
ATATGAAGCGAAGGGTTTGACATTTTCGGTGCACGCAGATGCAGCATGGG
GTGGATATTTGAATTGTATGACCCACGAAACTGGTGACGAAGAAAGCAAT
GTTTATTCCAATTGTCTTCCAACAAAAGCTCATGATTTCGTTCCTGCTAT
TCCACTTTCTGATTTCGTCAAGAAACAATATGTCAGTTTGCAGTACGCTG
ATACAGTGACCATCGATCCACACAAGTCAGGATTTTGTCCTTACCCTGCC
GNGAGTTTTGATtccttgattttaaaaattacctCTTTAATCTCAGTGAC
CATCGATCCACACAAGTCTGGATTTTGTCCTTACCCTGCCGGTGCTCTTC
TCTATCGAAATGGAACAATGAAAGGTTTCATCACACTTGCTGCACCAGAA
GTTTTCCATAGTCCTGATGATTTGAATGTTGGTATTTATGGTTTAGAAGG
ATCGAAACCTGGAGCAGCAGCTTGTGGCGTTCTCTTGTCTCACCGGGTAA
TCGGATTGGATCAAAACGGTTACGGTCGAATTCTTGGTCAATGTCAACTT
GGTGCTAAATTGTTCTACTGCATGTGGGAAACAGTCGCCAGAGATAACGA
TCCTTTCATCTGTTGCAACTTCATTCCACTTGATTTGAAAGAAATACAAG
AAAAAGGATTCGCATTCAAAACGCAACAAGATGTCCATGACTACATCAAG
AAACATATCATCGATAAACCAAATGAACAACTTGCCAAGAAGGTCATATC
GGTCGTATCGTGACCATATGCTGANCAGACTCACAGGAAGGGAGGATCCA
CCACTTGCACCCCAAAAACGAAAAGTCCCAAGCTTATCAGGCTATCATTC
AGACAAATTTGATAATGAGATCTGCGTTCTTTGTGGGAGTGCTGCTGGGG
AGGATGACCATGTTGCTACGACAGGCCCGGGAGGAGTCAAAGTCATTCAA
TACTTTTCGTG Run BLAST on NCBI protein sequence of TCONS_00045788-protein >TCONS_00045788-protein ID=TCONS_00045788-protein|Name=TCONS_00045788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MIGEPSIKDGTVRTYPRVFSPGTNHYSWPKASTILGIGDSNNIHIQVDSK
ARQDIETLEKELDYALEHKIAVFMVVAVIGSTEESAVDDIARILALKPKY
EAKGLTFSVHADAAWGGYLNCMTHETGDEESNVYSNCLPTKAHDFVPAIP
LSDFVKKQYVSLQYADTVTIDPHKSGFCPYPAXSFDSLILKITSLISVTI
DPHKSGFCPYPAGALLYRNGTMKGFITLAAPEVFHSPDDLNVGIYGLEGS
KPGAAACGVLLSHRVIGLDQNGYGRILGQCQLGAKLFYCMWETVARDNDP
FICCNFIPLDLKEIQEKGFAFKTQQDVHDYIKKHIIDKPNEQLAKKVISV
VS Run BLAST on NCBI transcript from alignment at scaffold_100:653427..655087 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045788 ID=TCONS_00045788|Name=TCONS_00045788|organism=Clytia hemisphaerica|type=transcript|length=1661bp|location=Sequence derived from alignment at scaffold_100:653427..655087 (Clytia hemisphaerica)
CACGAAAAGTATTGAATGACTTTGACTCCTCCCGGGCCTGTCGTAGCAAC
ATGGTCATCCTCCCCAGCAGCACTCCCACAAAGAACGCAGATCTCATTAT
CAAATTTGTCTGAATGATAGCCTGATAAGCTTGGGACTTTTCGTTTTTGG
GGTGCAAGTGGTGGATCCTCCCTTCCTGTGAGTCTGNTCAGCATATGGTC
ACGATACGACCGATATGACCTTCTTGGCAAGTTGTTCATTTGGTTTATCG
ATGATATGTTTCTTGATGTAGTCATGGACATCTTGTTGCGTTTTGAATGC
GAATCCTTTTTCTTGTATTTCTTTCAAATCAAGTGGAATGAAGTTGCAAC
AGATGAAAGGATCGTTATCTCTGGCGACTGTTTCCCACATGCAGTAGAAC
AATTTAGCACCAAGTTGACATTGACCAAGAATTCGACCGTAACCGTTTTG
ATCCAATCCGATTACCCGGTGAGACAAGAGAACGCCACAAGCTGCTGCTC
CAGGTTTCGATCCTTCTAAACCATAAATACCAACATTCAAATCATCAGGA
CTATGGAAAACTTCTGGTGCAGCAAGTGTGATGAAACCTTTCATTGTTCC
ATTTCGATAGAGAAGAGCACCGGCAGGGTAAGGACAAAATCCAGACTTGT
GTGGATCGATGGTCACTGAGATTAAAGaggtaatttttaaaatcaaggaA
TCAAAACTCNCGGCAGGGTAAGGACAAAATCCTGACTTGTGTGGATCGAT
GGTCACTGTATCAGCGTACTGCAAACTGACATATTGTTTCTTGACGAAAT
CAGAAAGTGGAATAGCAGGAACGAAATCATGAGCTTTTGTTGGAAGACAA
TTGGAATAAACATTGCTTTCTTCGTCACCAGTTTCGTGGGTCATACAATT
CAAATATCCACCCCATGCTGCATCTGCGTGCACCGAAAATGTCAAACCCT
TCGCTTCATATTTTGGTTTGAGAGCCAAGATTCTTGCGATATCATCCACA
GCACTTTCTTCTGTTGAACCAATCACTGCCACAACCATGAACACTGCAAT
CTTATGTTCCAATGCATAATCCAATTCCTTCTCCAGAGTTTCAATATCTT
GACGAGCTTTGCTGTCAACTTGAATGTGAATGTTATTAGAATCACCGATG
CCAAGAATGGTGGAAGCTTTCGGCCATGAATAATGATTTGTTCCTGGTGA
AAAGACTCTTGGATATGTTCTCACTGTTCCATCTTTGATGCTTGGTTCAC
CTATCATGTGTCGTCGGTAAAATTCTGGTAAGCCAAGTTGCACTGGTGAA
TTTTTCTCCAAAGCTTTGTCGACCGTATGGCCATCAAACTCGAAGACAAA
TCCaagaaatttctcgaaaatgcTCTTATGTTCCACGAAAACTTAATGCT
GTTGAAGTTAAGTCACCTTGTAGTTTGCTCAAATTCGCACAACAAACTCT
TAAAAAAATGATATTGATGTGCCGTTCAAGTGACGCTCAACAGCCTAAAT
CGTTTGTCCAAGGAGGTGATTCGAAAAAGTCTTGTACCCAGTGTGGTGAT
AATAACGACAATGAAAAGCCCAAAGATATCActataaatttgaatatttt
ctagatatttcaatgttttcaagCAATTTCAACAAGAGAAAATTTAATGT
TCGGTTAAAAN Coding sequence (CDS) from alignment at scaffold_100:653427..655087 >TCONS_00045788 ID=TCONS_00045788|Name=TCONS_00045788|organism=Clytia hemisphaerica|type=CDS|length=1059bp|location=Sequence derived from alignment at scaffold_100:653427..655087 (Clytia hemisphaerica)
TCACGATACGACCGATATGACCTTCTTGGCAAGTTGTTCATTTGGTTTAT
CGATGATATGTTTCTTGATGTAGTCATGGACATCTTGTTGCGTTTTGAAT
GCGAATCCTTTTTCTTGTATTTCTTTCAAATCAAGTGGAATGAAGTTGCA
ACAGATGAAAGGATCGTTATCTCTGGCGACTGTTTCCCACATGCAGTAGA
ACAATTTAGCACCAAGTTGACATTGACCAAGAATTCGACCGTAACCGTTT
TGATCCAATCCGATTACCCGGTGAGACAAGAGAACGCCACAAGCTGCTGC
TCCAGGTTTCGATCCTTCTAAACCATAAATACCAACATTCAAATCATCAG
GACTATGGAAAACTTCTGGTGCAGCAAGTGTGATGAAACCTTTCATTGTT
CCATTTCGATAGAGAAGAGCACCGGCAGGGTAAGGACAAAATCCAGACTT
GTGTGGATCGATGGTCACTGAGATTAAAGaggtaatttttaaaatcaagg
aATCAAAACTCNCGGCAGGGTAAGGACAAAATCCTGACTTGTGTGGATCG
ATGGTCACTGTATCAGCGTACTGCAAACTGACATATTGTTTCTTGACGAA
ATCAGAAAGTGGAATAGCAGGAACGAAATCATGAGCTTTTGTTGGAAGAC
AATTGGAATAAACATTGCTTTCTTCGTCACCAGTTTCGTGGGTCATACAA
TTCAAATATCCACCCCATGCTGCATCTGCGTGCACCGAAAATGTCAAACC
CTTCGCTTCATATTTTGGTTTGAGAGCCAAGATTCTTGCGATATCATCCA
CAGCACTTTCTTCTGTTGAACCAATCACTGCCACAACCATGAACACTGCA
ATCTTATGTTCCAATGCATAATCCAATTCCTTCTCCAGAGTTTCAATATC
TTGACGAGCTTTGCTGTCAACTTGAATGTGAATGTTATTAGAATCACCGA
TGCCAAGAATGGTGGAAGCTTTCGGCCATGAATAATGATTTGTTCCTGGT
GAAAAGACTCTTGGATATGTTCTCACTGTTCCATCTTTGATGCTTGGTTC
ACCTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045788-exon-scaffold_100-1491911889:653427..655087 | TCONS_00045788-exon-scaffold_100-1491911889:653427..655087 | Clytia hemisphaerica | exon |
| TCONS_00045788-exon-scaffold_100-1510915933:653427..655087 | TCONS_00045788-exon-scaffold_100-1510915933:653427..655087 | Clytia hemisphaerica | exon |
| TCONS_00045788-exon-scaffold_100-1575043694:653427..655087 | TCONS_00045788-exon-scaffold_100-1575043694:653427..655087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:653427..655087 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
| GO:0016831 | carboxy-lyase activity |
| GO:0030170 | pyridoxal phosphate binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0019752 | carboxylic acid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0019752 |
carboxylic acid metabolic process |
| molecular_function |
GO:0016831 |
carboxy-lyase activity |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0030170 |
pyridoxal phosphate binding |
Blast
The following BLAST results are available for this feature:
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