TCONS_00045665 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045665
Unique Name	TCONS_00045665
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	371

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_100:280733..285997+

transcript sequence

>TCONS_00045665 ID=TCONS_00045665|Name=TCONS_00045665|organism=Clytia hemisphaerica|type=transcript|length=371bp
ATTGGATTTCCGTTTGAGTTTTTGGAAACGGCGGATTTCCAATGTATAAT
TTGCACCCATGTGATCAGAGGATTTACGGAGCTGCCATGTGGTCATGCTG
GGTGCAAATTATGTATTGAAGAGTGGGAAAAACGAAAAGTggctTGCTGC
GAATGTCAAACGGCATATGACAAGACAAAGAAACATGGAAGTCTGTACAA
TGACCGAAAAATCAAGCACGAAAAGCAAGCTCACTGCAAGCAACACGAGA
AAGGCTGCACTTGGCAAGGCTCCATTGATGATTACAAGCAGCAGCACCGC
AAAAAGTGTGCATTCAGAAACGTCAGATGTCGTCTATGTAATCAAAAAGT
CGCTCGTCAGGAAAAGGATGG

Run BLAST on NCBI

transcript from alignment at scaffold_100:280733..285997+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045665 ID=TCONS_00045665|Name=TCONS_00045665|organism=Clytia hemisphaerica|type=transcript|length=5265bp|location=Sequence derived from alignment at scaffold_100:280733..285997+ (Clytia hemisphaerica)
ATTGGATTTCCGTTTGAGTTTTTGGAAACGGCGGATTTCCAATGTATAAT
TTGCACCCATGTGATCAGAGGATTTACGGAGCTGCCATGTGGTCATGCTG
GGTGCAAATTATGTATTGAAGAGTGGGAAAAACGAAAAGTGTAAGTCTGT
TCTTTTCTACCTAAAGAGAAACTTTAGTATGCGATCGTATCGACAAAGGG
ATAGTttattacgatagccttccgtgtgtatgtatgtatgtatgtggcGA
GACATTTtatggggcgcaaattatggcgtgggcgtttggctgcgggcgta
ctacggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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tttatcacaagttccttcaaagcacaaaatgagggttctggcatcaaaga
atgaaaagttcattttttcttcttcattttcaaaaacaattaaaattatt
tttctcaagtatataTTGCggttctctgaattattctgaaatgaaagatt
ttgtttacgctttatagaatggaattctttagtcacattttttaaggaat
cttttttttaatggattgagatttttcataaaaaacagggtatctatgac
ctatgtgtacaatacattctctatattttgttcaaaatgcataatgctgc
aggagtcacgtatcacgcgtcttcgtcgttgatgttcaagtattatgcga
aattttcgactttaagttgtcttgtttttttttgatatCTTATTTGATAG
TGAAAACATAaaggctttttttgtaaaaaagaaatgcttaataagaataa
attaagaacagcctcaaattttagaaataacaaccaagaaaatattgaat
ttatcCTTTTTGTAAGCCAATAGTAAATGAACAGAGTAAGCAacaaatta
ggaacattttaagaacattggagcaatgaaatcaacaaaataagaacagc
cgagctgATTTATTTATTGTCGTACCTCCGATACCCTCTAACGAAATATT
TAGTTGacatggagtttttataagaacaaataatccatccattttcaggg
ctTGCTGCGAATGTCAAACGGCATATGACAAGACAAAGGTAGATAATAAA
TTCTTATCTTTTTCAAGTTCTATAATAAATCAATTCAGggaaatttcatc
actttttaaaCTGGGTTTTAAAGACCCTTTGCAAGAAAGTTTGCGAGCAA
GCGAATGATTTTCAAAACCAACCCTTTTCACAATGTTCTCGTCAAGAAGG
TTTGTGAACAAGTGAATACCTAAAAGTGATTTTCAAAACCAACACAACAA
TAGTTTGCAGAGAGGTATGAACCCACTAGGTTTATTTcactaaccccccc
cccccccctttcacctttcttttataaaaaaaaaaaaattttcaaaaaag
tatgaACCCCCAAGTTTTTTTtccctacccccccccccccgcctaTGTAC
GTCTTTAAATAACATAATACACTTTTGTGTTATGATGATacatattttta
ctttaaaacagACAGACTGTGACCATTTGTAAATGATTAAGTTgatcaaa
attttcaacttcccTTTCTTATTTGAACCCCTTAGCCTAATCTTGGAACA
TCCTACTAAAGTCCCCATAAAAGTTGCTGTTCCTCCCTATTAAAAAGAGG
GGTGCAATCTATGCAACGATTGAAGTGATGTTAAGAATGGTCAATTAATT
TTCAGAAACATGGAAGTCTGTACAATGACCGAAAAATCAAGCACGAAAAG
CAAGCTCACTGCAAGCAACACGAGAAAGGCTGCACTTGGCAAGGCTCCAT
TGATGATTACAAGCAGCAGGTTAGTTCATGTTTTTCGAGAACACTTTAAC
TTAAATATAGACTTTACAGAGTTTTCGTCGTTAATCGCAAAGTCTTGTAT
GTTTCTGTGACTCTTTTAATTTACAAATGTAACTCTATTGGCAGGTAATG
ATCATATAAGATAATTCGAAGTATGATTCTTAATTCATGatcatagtttg
cagaggggtatgaacccccctaggtttatttcatccccccctatataccN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccctt
ttttatttgatccccccctacattcccatcccccctagttttttcggcag
atctcggtaccccccctacaaaggccctccaaaaagttggcatccccccc
tattaaaaagggggggtgcaaactatgatgATATTCGGgacgtaatcttt
tctacgAAAACACCCCGGTCTTTGctagtagtggcaaattttgaagaatt
tttctctatttttaatTTGCCACTACCTGCAAAAACCGGGGTGTTTccgt
aaaaaaaattacatcatgaatatcatgaatacgaCCTAAAACATTAAATT
GGAGTAATTCGGATAcgattttcttttaaacaaactAGCACCGCAAAAAG
TGTGCATTCAGAAACGTCAGATGTCGTCTATGTAATCAAAAAGTCGCTCG
TCAGGAAAAGGATGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029194	XLOC_029194	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00045665-exon-scaffold_100-1491911889:280733..280872	TCONS_00045665-exon-scaffold_100-1491911889:280733..280872	Clytia hemisphaerica	exon
TCONS_00045665-exon-scaffold_100-1510915933:280733..280872	TCONS_00045665-exon-scaffold_100-1510915933:280733..280872	Clytia hemisphaerica	exon
TCONS_00045665-exon-scaffold_100-1575043694:280733..280872	TCONS_00045665-exon-scaffold_100-1575043694:280733..280872	Clytia hemisphaerica	exon
TCONS_00045665-exon-scaffold_100-1491911889:284131..284170	TCONS_00045665-exon-scaffold_100-1491911889:284131..284170	Clytia hemisphaerica	exon
TCONS_00045665-exon-scaffold_100-1510915933:284131..284170	TCONS_00045665-exon-scaffold_100-1510915933:284131..284170	Clytia hemisphaerica	exon
TCONS_00045665-exon-scaffold_100-1575043694:284131..284170	TCONS_00045665-exon-scaffold_100-1575043694:284131..284170	Clytia hemisphaerica	exon
TCONS_00045665-exon-scaffold_100-1491911889:284788..284901	TCONS_00045665-exon-scaffold_100-1491911889:284788..284901	Clytia hemisphaerica	exon
TCONS_00045665-exon-scaffold_100-1510915933:284788..284901	TCONS_00045665-exon-scaffold_100-1510915933:284788..284901	Clytia hemisphaerica	exon
TCONS_00045665-exon-scaffold_100-1575043694:284788..284901	TCONS_00045665-exon-scaffold_100-1575043694:284788..284901	Clytia hemisphaerica	exon
TCONS_00045665-exon-scaffold_100-1491911889:285921..285997	TCONS_00045665-exon-scaffold_100-1491911889:285921..285997	Clytia hemisphaerica	exon
TCONS_00045665-exon-scaffold_100-1510915933:285921..285997	TCONS_00045665-exon-scaffold_100-1510915933:285921..285997	Clytia hemisphaerica	exon
TCONS_00045665-exon-scaffold_100-1575043694:285921..285997	TCONS_00045665-exon-scaffold_100-1575043694:285921..285997	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_100	supercontig	scaffold_100:280733..285997 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	4.93996	7.20483	0.101464	0	1.69862	3.44435	0	9.30904	3.93116	2.84168	0.467647	1.42881	1.79311	0	0.690662	2.0563	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00045665 vs. Swiss-Prot (Human)

BLAST of TCONS_00045665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00045665 (transcript) - C. hemisphaerica