TCONS_00045570 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045570
Unique Name	TCONS_00045570
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	658

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_1:165132..171341+

transcript sequence

>TCONS_00045570 ID=TCONS_00045570|Name=TCONS_00045570|organism=Clytia hemisphaerica|type=transcript|length=658bp
TGGAATTGGAGCATCCACTATATgacGGTGCTGAAGCTTTTAAAGACAGA
AATCTACACATCACAATCAACATGTTTGGAGACCTTAAAAGTGCTGCTGG
TGTCAAAGAATTAAATTGCTTTTTAGCCGATAAGAGTTATATTGAAGGAT
ACATTCCTTCCCAAGCTGATGTCACTGTCTTTGCTGCTCTTGCTTCAGCC
CCTGGAACAGAGTTTGCCCATGCTTTGAGATGGTACAATCACATTCGCTC
TTACTCTTGTGATGAAAAGAAAAGCTTTGCAAGCGCTACTGGTGATCATG
GTGTGAGAGGAGCTGCACAAGCTAAGAAAGACGACGATGATGAATTGGAT
TTGTTTGGGTCTGACTCTGACGAAGAAGAAGAGactgaagaagaaaagaa
agtcaGAGAAGAACGACTTGCCAAATATGCTGCCAAAAAAGCCAACAAGA
AAACTGTAATCGCTAAATCAAGTCTTTTAATCGACGTCAAACCATGGGAT
GATGAAACTGACATGAAAGCTCTAGAAGCAGAAGTTCGAAAGATCGAAGC
CGAAGGGCTTTTGTGGGGTGCAAGCAAACTCATACCTGTCGGATACGGAA
TCAAGAAACTTCAGATCAACGCCGTCATCGTAGACGATAAGATTTCGACG
GACTNGGT

Run BLAST on NCBI

transcript from alignment at scaffold_1:165132..171341+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045570 ID=TCONS_00045570|Name=TCONS_00045570|organism=Clytia hemisphaerica|type=transcript|length=6210bp|location=Sequence derived from alignment at scaffold_1:165132..171341+ (Clytia hemisphaerica)
TGGAATTGGAGCATCCACTATATgacgtgagtatcacagctcaaataaat
atcaatattttatctgatgaaaacttgacctctggtACCCAGGGTAATGT
GATGACagttattAAATTTGGCCTCGGTTTCCTCCACGTTCTCACGGCTC
TTGTTCTcgttttattttttcgttctttcGTTCTTTCTAGCGCTGGCGAG
CAGCTAGAAatctttattttgaatattttttatgaatggtCACAcagttt
ttcttattttcatggCTCCCGTAAGAGGGTTTTTCTAAGCCGTGTGACCA
TTTTAGAGGCACTCGTGGTATTTTTGGTTTCTCACCGAAATATCAATCTT
TTCACTTCTACTTTCAAAAGGGTGCTGAAGCTTTTAAAGACAGAAATCTA
CACATCACAATCAACATGTTTGGAGACCTTAAAAGTGCTGCTGGTGTCAA
AGAATTAAATTGCTTTTTAGCCGATAAGAGTTATATTGAAGGGTAATAAA
TGATTTTATTTCCTTGTAGTTAAAAAGTAATAATAATACTTGGAACAGAG
GACGGACGACGTGAGGCTAAAAGGGTTGAAGATATATATatacttctttc
catcttaactcatattgagctGCTTTCTTCCTTATagtcattttagatca
ctagttttacatTGACGGACTTCCATGTCattacatttttcttttcaact
cCAACCTGATCGATTTTCTGtactgtgaatgttcattctagatttttgtt
gtaatttgtattgtctttttgttttgtgagttttgtctttagtgtttcca
ttttgagtagttcaaggttttatacttctagactatatatatgtgaagaa
ataagtatttctgtccaactatatatCCTGAGCCTTAGCTTTATTAGcta
ctgtgaagtcgggtaactttttttttttatgtacAATTGACAGTTGAATT
AGTGCGATTGTTTTGCCTGATTCTTTTTAGCCAGTCAGCGTGTGCAAAAG
CTCAATTAATATTTATtccaaatctggatgaaaaagatcaaaacactAAC
CTGTGCAGATTCTCTTACAGAGCCAAAGCCTTTAAAGTAAAAACCTGTCA
TGTGAAGAGGTCAAAATTTGCTCTGAGATGAGAGATTTTGAGACACTTAA
CTCAATAACTACTTGTTATATATATTAAAGAAAGCCAGGAattaaaagtt
ttgtaaaaatggcTGCATTTAAAAGACTGATGTCACCTcgacaatcagtg
acaaaatacttggcacaaaagggaaattcaccggggtgttttaaaaccac
aatcgatttgcaagtgctctaaagtaggtttgaagggcagagttttaact
ctgagttttaacgctagacttaagacttaggaccttaggatctgagaatc
caaaagttcaaaaatggtttagtagggcttgaaatatagcctagaaacca
ataaatccctctaagatcgaaataatcaatgaaatcaagttgaaggcctg
aaattgacattctcactcgaacttcaattttcaaaaaatggtaaattagc
taAAAGTGCCgatatattatggcactgattgtagattcataacaaattga
aatatgtgattttgtcaaaatatgtCATCAGTTTAAAAAGTTATACCAGT
TTTAAACATCAAGACATTAGACACCACTGCAtgatttataaagttttggt
tcttgttttcaaattacTTGTTACTTCTGTGTATCATAACGTGATTATCC
ATGCTTTTTTTATCTCAGATACATTCCTTCCCAAGCTGATGTCACTGTCT
TTGCTGCTCTTGCTTCAGCCCCTGGAACAGAGTTTGCCCATGCTTTGAGA
TGGTACAATCACATTCGCTCTTACTCTTGTGATGAAAAGAAAAGGTAATT
TTTAGTTAAAATAGATACAAGCTTTTGATGGGACCAATAACGAACTTTCA
AGGACAATTTTTCTTTCATAGCAGGGCCTGAAATATATAACAATATTTTG
ATGGTGGAATCTATTTTGGTCGGACATTTCATTGATTGGGTCAGActatg
tccgatgtccgaccatTATTTCAGGCCCTGCATACTGTTTTTTGGCTTCT
TAAATCAAGGAATGTTCATCTTATCTATTCCATATGAGAGAAAATAAACT
TTCTTTACCTTTTTTATATTTAGCTTTGCAAGCGCTACTGGTGATCATGG
TGTGAGAGGAGCTGAACAAGCTAAGAAAGACGACGATGATGAATTGGATT
TGTTTGGGTCTGACTCTGACGAAGAAGAAGAGGTATGGTTCTGAGtggtt
tttgaattttctttctggATGATGTAACCAGataaatttttgtatattta
ccaTTATTTTAGTGTTGAAAGCTTGATCTGCGTTACAAAGCATTCCTGTC
ATATTCTTGATATTTCTTTAGATGGTAAAAATCAGTTTATGGGAAAAAAG
TTCAAAGCTTTAAATGAACTAAGGAACTCAACAGTCTTTAACTGTTAAAT
TTCTACCTCTAGCtgatattaaaattcaaaattttagctttgaaTAAACC
AAGAAACCCAAGAGTACTTCAATTCTTACTTACTGAAACTATCATTATTC
CCAAATCAATTCATAGactgaagaagaaaagaaagtcaGAGAAGAACGAC
TTGCCAAATATGCTGCCAAAAAAGCCAACAAGAGTAAGTTTACTGAACAT
GGCAAACCATCATGCTAAATTTCCATTCCACTTTTGANtaaaagtgattt
ttgaagccggaactttctaaaaatcgccggaacagcctattttcgccgga
aaaacggtatttcttgaatttcttgagctttactttatattttttcatga
aattttgcacactggcGCCATATGATAATatcaaaatgtgacggagcccg
attttcgaaaaacatttttttccggccgaaaatgtcagaaatatgccgga
aaaaccggttttttgacattttctcgaattttcattttcatttttttctg
attttttgttgaaagatgcgtattcgcaatgctcaaaacatggccgagtt
cgatttttgagaaaaaattttttccggttgaaaattccggaaatctccgt
ttttgcatattttcattggattttttccttatatttctatgtttttcaca
caaaaacattattgataacaatgctcaccatcaagcatgattcaatNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaacgctatgt
tttctgactgattttttttcatttttctccttgcattgctatctaacttt
catcatcaggtaggtccattcagcatctagcttgttataTTTAGCTTTGC
AAGCGCTACTGGTGATCATGGTGTGAGAGGAGCTGCACAAGCTAAGAAAG
ACGACGATGATGAATTGGATTTGTTTGGGTCTGACTCTGACGAAGAAGAA
GAGGTAtggttttgagtggtttttgaattttctttctggATGATGTAACC
AGataaatttttgtatatttaccaTTATTTTAGTGTTGAAAGCTTGATCT
GCGTTATAAAGCATTCTTGTCATCTTCTTGATATTTCTTTGGATGGTAAA
AATCAGTTTAtgggaaaaaagttccaaagcTTTAAATGAACTAAGGAACT
CAACAGTCTTTAACTGTTAAATTTCTACCTCTAGCTGATattataattca
aaattttagctttgaaTAAACCAAGAAACCCAAGAGTACTTCAATTCTTA
CTTACTGAAACTATCATTATTCCCAAATCAATTCATAGactgaagaagaa
aagaaagtcaGAGAAGAACGACTTGCCAAATATGCTGCCAAAAAAGCCAA
CAAGAGTAAGTTTACTGAACATGGCAAACCATCATGCTAAATTTCCATTC
CACTTTTGAGTTGTTTTTTATGCGGCTGTTCTTTATTTTTACGTACAGCT
TTTGGTATATGCCTTAAATTGATTCAAATTATAATTTTCCATTTAGAAAC
TGTAATCGCTAAATCAAGTCTTTTAATCGACGTCAAACCATGGGATGATG
AAACTGGTAAGTAACCCATACagtattttatgaaaatattagctaataaa
atttgattttattagATGTTTTTTCCTAGGAATAATTGTTttgtgtttta
attttcaatttttttttaattgctttaAACACAAAAAACTTGCTTAATGT
ATGAATTTTGTATGTTTTTAGACATGAAAGCTCTAGAAGCAGAAGTTCGA
AAGATCGAAGCCGAAGGGCTTTTGTGGGGTGCAAGTGAGTATCTTTTTCT
TCTTGATATGTAATTATAAACGTTAATTGTTCTTGAAGATTTCCAATAAC
TTATTTCTTAACCCTTTGCATCACCTTAAAtgagaaaaatatataaatta
cTGACCAAAacctaaaattggaaaaatgccCAATTGGAAAAATGCCCAAT
TTGAATTGATCAACATGATAGAATAGAATCCAAAATGGTGAACACTGAAA
ACAGAAAAATACAGAAAACATGTGAGGGGATGCCAAAAATGATGGAAAGA
CACTGAACTTGGCCTTAAGGCTTAGCCGTTACACAACTGCACCCTATTGA
ATTGAAATGTGAATTTGTATCTTTTTGTGAAATATTACAAACTATTTCCC
TCAAAATTTACGAGGCTACTCCATGTAACACAAATTTGCCTAAATCATCC
TTAGGTTACTGTTTAATTAGAAAGTATTAAGTATTCATGACAAAAGCTTC
CAGCCAAAATTCCCAACATCTACCACAGGTCAAAAGGTCAATGTCACTTG
ACAATCTTcatctaccttaagggaagaaatttttgcggaatttaatttcg
cgtaagagagtttcaaaatggcaaatttcgcggaagttaatttcgcgaat
gagctgaattcaaaagtttcacggaatttaattttgcgattgagaaattt
caaaagaattttttttacagagaaagtgtttttcataattttcatcaaaa
ttcgtgaaattaaattccgtgaaaatttcttccgtgaaaatttcttccct
taaggtaccaaAGATGCTTCCCCTATTCAAAATTAGGTTTATTATTGGAG
GGTTTATAAGCATAAATAGGCTTTTTTATTCTGCAACATGTTTAAAACTT
AGGTTATGTTCTTATTTGATGTAAGTTCTATCTGTGGTGAATCATTATTA
TTCTTCACTTTTCTCTTTAGGCAAACTCATACCTGTCGGATACGGAATCA
AGAAACTTCAGATCAACGCCGTCATCGTAGACGATAAGGTCAGTAAATGA
AGTTTGTTTTAGGTTGAGATGTTGTTTTCCTTGCTCATTCCGATGATTAG
ATGAAACTCACACACTTACTTATTTGAAACATGTGAAAATATTCTGCAAA
TATGAGGATTGAACAATAATGCTCCCATTGTATTTCTTTAGACTTCAGCC
TTTTTATGTTACACTAATCCTGCTTGTTTTGTTTATAAGCATGTTCTTTT
GGAAAACAGGCTCGGTTATTCTTAGCTCTTTGATTCATTTAAAATGGAAA
AGAGAATGAATCTTCCCAAATAAACAGCCCATGACTACTGACCCACTACC
AAAGCTCACTGATATTCTTatgatatgcttatttttcaCCAAATCCAAGT
AttagtatgcttataaacgttatgcttataaaagaaaaacgtgtatcgtC
CTGTTCAATGATTACTACATATACTCACACATTTACTTATTTGATATATC
TGTGAAAATATTCTGCAAATATGAGAACCAGGGCGAAGTTTTAGTTACTG
TCAGGTCTTTTTACTTTGTCTAACCAGTTTTGAATTCTGTTCAGATAATC
CAATGATTATTATAAATCACACACATTCTTTGATATTCGTGAAAATATTC
TGCAAATATGAGGATTTACTGATAATGCTGTTCCACCTTTCTATTTCGGT
TTATGCTGTTTCATAcatcatgaaaaatgttttccttttccAGATTTCGA
CGGACTNGGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029135	XLOC_029135	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:165132..171341 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.94254	6.44238	4.06343	0	126.175	111.254	224.224	228.1	530.139	474.936	680.588	767.181	936.195	1087.95	9.11062	9.17476	10.1544	10.1161	4.54456	13.3934	3.93962	5.63469	1.92294	1.95909	649.935	698.783	6.78773	1.94984	8.3757	2.13866

Blast

[Close]

BLAST of TCONS_00045570 vs. Swiss-Prot (Human)
Match: EF1B (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 6.333e-54
Identity = 112/200 (56.00%), Postives = 138/200 (69.00%), Query Frame = 3

Query:   75 FGDLKSAAGVKELNCFLADKSYIEGYIPSQADVTVFAALASAPGTEFAHALRWYNHIRSYSCDEKKSFASATGDHGVRGAAQAKKXXXXXXXXXXXXXXXX-------XXXXXXXXXXXXXLXXXXXXXXXXXTVIAKSSLLIDVKPWDDETDMKALEAEVRKIEAEGLLWGASKLIPVGYGIKKLQINAVIVDDKISTD 653
            FGDLKS AG++ LN +LADKSYIEGY+PSQADV VF A++S P  +  HALRWYNHI+SY   EK S        G  G A  +            D D +       EE+EE K++REERLA+Y +KKA K  ++AKSS+L+DVKPWDDETDM  LE  VR I+A+GL+WG+SKL+PVGYGIKKLQI  V+ DDK+ TD
Sbjct:    3 FGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIKSYE-KEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 201

The following BLAST results are available for this feature:

BLAST of TCONS_00045570 vs. Swiss-Prot (Human)

BLAST of TCONS_00045570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EF1B	6.333e-54	56.00	Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2...	[more]

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TCONS_00045570 (transcript) - C. hemisphaerica