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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004374 ID=TCONS_00004374|Name=TCONS_00004374|organism=Clytia hemisphaerica|type=transcript|length=1851bp
gaaaaaagctacctatctttaagcgattgaaaaatattgttgaaattgaa
aattttgaaaaaaaacttcttggaaataaagtagagatgttaaaattttt
gtaaaacctcttttcctctagatttgagagagattttaaatttgatcgac
gtttcgggggccacatactgtagcaGTACTACTTACAATCTAAATTCCAG
AAGATAACGTTCTTCACCGGCAGAGAGAGATGGCCTGGAATCAAAAAGGA
GAAATATCAAGGAGAAAGATGAACAAATATACTGCAATTTTTGCTTTTGT
GGGAGGATTCGTTTTAGTGTTTGCTATTTGGAACATCCAATATGTTTATA
ATTCATCTTCGACAAAGGAGCTGACAACTTTAACTGAGGAACGAATGCAG
AAGATTCAAAATGAACAAATTCTAAGAATCAAAGATCTTTTATTTCCTGA
TAAAgGTAATACAACTTCGATACCTACAACAAAATCGACCGCCCAAACGC
CTACATCAGAGAGCGTCATCGTTAAACAGCTGAATGAAATACGAAATAAT
ATGAAAGATTTTGacgataaaattaaaaaattggcTGATTGGGAAAGCTA
TCGCGTACAgcgtgaaaaattaaaaacattagtCCATGTTCAGAATTCCA
AAGAAAGCGAGAATAAGAAATACAGTATGTTTCGTCCTCATGTTTTAGTT
GATAAAGTCACTTTGGATTGCAAAGAACACTATAAAGTTATCGTTCTGGT
AACCTCATTTGCGAAGCACTTCGATCGCCGCCAATGGATTCGAAAAGCAT
GGGGTAACCAAACATTCTGGAACGAAACTCATGAACATtggcaagtgatt
tttaacatAGGGGCTGTGCAACGGGATATGAAGGATACTTATGATAAATT
AATGGAAGAATCTCAGAAATATGGAGATATGTTGATTCTAGACATCCAAG
AAGATTTTCATAAACTTTCTCAAAAAGTAATGACGGCTTTATTCTGGGTT
TAcactaaatttaatttcgaGTTTGTTTTCAAAAGTGATGATGATGTCTT
TATCCATATGCAGCGCTtgttgacaaaattgaacggaacTTGGTCGAAGG
AGAATTTTGTTGGTAACGCAATGTTTGGACAGCCTCCAGAACGGAATAAA
GGACGTTATGGTGTATCCCTTGAAGAATGGcctaagaaattttttgatcc
tTATTGCAGTGGAGGTGGTTACATCTTATCGCACTATATAATTGAGCATA
TGATTCCCTATTTTAATTGGGAAACCCCTTTAAAGATAGATGACGCGTAT
ATTGGACATTTGGTGAACCTTGCAGGTGGAAAAGTGAAACACGAATTTAA
AAGTTTCCTTATGTATAACGTTAAACTAGAATACTCAGCAGATTTGGTTG
TCACTCATCCAGTTAAATTTCCACCGTTTCGTGAATTTCTAGAAGTTAAA
GCCGGTCTCGAACTTGGACGTATCAAAACTCATGAGATGCAAAATTTCAC
TCGCTTAAGAGATTATCAAGATCACAAGAAAAAACTTCAAGCTTTGTTAA
GTACTactaaaaaaactttgactAAATCTGTAGCTCTGGATGTAAAAAGG
TCAACACCTACTACAGCCAGAACTTTAAAGGACGTTGGCCTTAATGTTAC
CACGGCTTCCCCAAAGTAGCAGTTGAATAGTAGGCCTACAAAATCCACAA
AAAGTTGTCGCAACTCTAGAAGCTTCAgataataccttatcggggaaaac
ttcgtcggggaaaattttcgtcggtgaaaattttcgtcggggaaaaattc
gtcataTGTTgatagttggtaaacgcattaaggccggggaaaattttcgt
c Run BLAST on NCBI protein sequence of TCONS_00004374-protein >TCONS_00004374-protein ID=TCONS_00004374-protein|Name=TCONS_00004374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
MAWNQKGEISRRKMNKYTAIFAFVGGFVLVFAIWNIQYVYNSSSTKELTT
LTEERMQKIQNEQILRIKDLLFPDKGNTTSIPTTKSTAQTPTSESVIVKQ
LNEIRNNMKDFDDKIKKLADWESYRVQREKLKTLVHVQNSKESENKKYSM
FRPHVLVDKVTLDCKEHYKVIVLVTSFAKHFDRRQWIRKAWGNQTFWNET
HEHWQVIFNIGAVQRDMKDTYDKLMEESQKYGDMLILDIQEDFHKLSQKV
MTALFWVYTKFNFEFVFKSDDDVFIHMQRLLTKLNGTWSKENFVGNAMFG
QPPERNKGRYGVSLEEWPKKFFDPYCSGGGYILSHYIIEHMIPYFNWETP
LKIDDAYIGHLVNLAGGKVKHEFKSFLMYNVKLEYSADLVVTHPVKFPPF
REFLEVKAGLELGRIKTHEMQNFTRLRDYQDHKKKLQALLSTTKKTLTKS
VALDVKRSTPTTARTLKDVGLNVTTASPK Run BLAST on NCBI transcript from alignment at sc0000044:756715..769560+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004374 ID=TCONS_00004374|Name=TCONS_00004374|organism=Clytia hemisphaerica|type=transcript|length=12846bp|location=Sequence derived from alignment at sc0000044:756715..769560+ (Clytia hemisphaerica)
gaaaaaagctacctatctttaagcgattgaaaaatattgttgaaattgaa
aattttgaaaaaaaacttcttggaaataaagtagagatgttaaaattttt
gtaaaacctcttttcctctagatttgagagagattttaaatttgatcgac
gtttcgggggccacatactgtagcaGTACTACTTACAATCTAAATTCCAG
AAGATAACGTTCTTCACCGGCAGGTAGGTAGATCAAAATTAATAACTTCA
AAAGCTCTTGCTGAATTTTATAAGTCACATAAGAAAATTCTTTACCCAAT
AAAAGAGGATCTACCCGGACAGCTTTGACGATTCACGTCTAGTTTTTGGA
CAAATATCAAATAAGCTTTTGATCCGCATAACGATCCGCTctagtaaaac
aaaaaaaatcacacccAAATCAAACACAAATCATAGGCCATGGTCAGTGG
ATTGAAGctttagaaataaaaattataaaaaaggtCTTTGATTGATTGAG
CATAAATGATGCAtaatttggggaaattcccaaacTTCTTAATTTTCTGA
CTGCAAAAACACGTCCATAATCTTCTGATGTACAAAAGTTAGAAAAAGCT
CCATCACGTGGTATATAtatcttttgattttatttgcaGACCCCGAAAAT
TCGTTATTTTTCACCTTCAGAATTTTCCCTGGAAATTATacattttgata
caaaatgaaGTGTTATGGAAGGAGGGTGGCCATGGCCTTTTACATTCGCT
GCATCTCCTTTTAGTTCAGAATGTAATGCGTGCTGTTATGAGATTAACGT
TtttccagctggcacacagcaTTATTTTAACGGTTATCAACAGACattct
acatgttttttttacaagcataacgcttataagcatatgaaggctcagat
ttgcagaattcctacaCATAACATAATCATATATGTCATcctggaatatt
tttcaagttgtcattttttatttgcttaaaaaggtttggtagaggtcaag
taaaaaaagacattccacggctagctacattccactgctcccaaaatctg
aacaaatttttacaaaatttctgaaatttcaccaaaaacttggcatgatt
cataagcatataataagcataagttatgcctggatgctttaagaacttaa
gcataatacacgagcctgaccaaggggcatacactttcttataaaaaaaa
catgtacttggTTAATTTGCATAGATCAAAATGCATTTGCATGTTGATTT
GATGTTGTTGTGCCAGCTTGGTTGACAATtctaaaattctttcttttttt
gaatcCATTTTTTAGAGAGAGATGGCCTGGAATCAAAAAGGAGAAATATC
AAGGAGAAAGATGAACAAATATACTGCAATTTTTGCTTTTGTGGGAGGAT
TCGTTTTAGTGTTTGCTATTTGGAACATCCAATATGTTTATAATTCATCT
TCGACAAAGGAGCTGACAACTTTAACTGAGGAACGAATGCAGAAGATTCA
AAATGAACAAATTCTAAGAATCAAAGATCTTTTATTTCCTGATAAAggta
tatagtttgttcttttaccCCGCATACAATACCCAGAGAGCAATTTGCAT
catttgattttactgatggacgtgatgTCTGTCATGATGCACGTGCTTTC
GTTAGCGCTATCATACTTTAAGGGAAATAATTTTCAcggaaagaaatttt
cgcggaatttaattttgcggctcacagctcaaaattcggaAGTTTCGCGG
AATTCAATTTTGCGGTTGAGaggaatttttgtttaaaatatggcTTATTT
TGCCGCCTCAAAACACCAATTGTataggtgattttttaaatcatgagaat
attcttgttttgcggaatttaattcaTTCcggcgaaaatttcttccctta
aggttaTAAAAAGTGTTACTTCGGTAACTGGGTTTGATTTTGCCCTCAAT
GATAATTCTACACGATATAATCTTATAAGTTGTTAAGGGGGTctgagttt
tgaaaaaatcaagagGTAAGATAATATACCACGTGTGTCTTTTACTTCTC
CACGAGTCCTAAAAGTAATAATAGAATTTTTTGGGGAAGAAAAGGGTACT
TTGAAAAGTCTGGAAGGACCAAATAATTACTCTCCCATAGAAAAAAACAG
GACTGTTAGTCAACAATGAATTAAATTGCGTACGTCTAAACTACGTGCTT
GTGGGTTGAACGAAATCTCCAGAGATGATATCATTGTGAAATAGTATTGA
CCGTATTCTCGCGCCTTTCTGACATTTGCTATATCATAAGTATATGACGA
AAGGCTATCGAGTAGTCCTACTCGATAGCTTCGATTCGCTGGAGTTCGGT
GGATATTCGCTGGAGTTCGGTATTCGGGATTCGGGATTCGGGATTCAAAA
TCGGGATTCGAGAAACGTCAATAAAAATTTACTAACTAATgctattgact
tcaaataaaaaacggatgatAGACTTTATTATAAGGattaaaaatttcga
aaaagaattcCAAAAAAGGGCGTGGTAATTTCGTTATTTAGGGAAATTTC
TATTTCgatatttagaaatttttcaacaGTGGAACTTTGAAATGCTCTCC
AGGCTTGGGAAATTACTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCGTATAGAGAGGgacgccaa
aaacaaaaaatctttaaaaagggcgccatatttgccttggccaccccaga
gaaattttcccaccacgccactgattGAGAAGTTGAATGAAAGATATGGC
ATCTTTAAGTCAAATTTTGGGGGCCCTTGAATTAGCATAGATAGAATTGT
AAATTCTAAAGATGGGTAATAGCTAAAACCTGTGGAATTCTTTTGCTACC
AACTTAACTTCATAGTTTGCAACAGAAAATCAACTTAATATACAATAATA
TTTGCTTAATCAGCAAAATCGGGAAAAATTTATCGTTTCCATGGAAAATA
TAagagaaaaataactttaaagccTCATATCTTTGGATTGAGCcaagttt
taattttgatttttttacagCGTAATCCATACCCAAATAGGattatttcc
aaaagaaaatgNTATTGAGCCAAGTTTTAATTCTGATTAtttttacagcg
taagccataCCCAAATAGGattatttccaaaagaaaatggttttcaaaaa
ttcaatcaaaacgtcatttcatttaaacagtcattttcaaaatttcaaaa
ttttcggttTGGACTTTGCATAAAGAGTGGCCGAACTCTTTTACTCTTAG
AGAGACCATGTTACATACTTCACATATGGTATTGGAATAGAAAACAatgt
ttatttttaataaaacttttcaCTCTACATTTGTGTATTGAGCACATCGT
GAAGAGACCATTTTCACAATATTACTTCATATGTATACTTACttcaggtg
tacaaactttcacgagctgaaactttcgcgagatcgaaaatttacgacat
ttacttttgcgaatttgaggaaaaagtaTTTTTCGCGAGCACTAACTTTC
ACGAAATGgatgataaaaagaaaattttcacacGAAATACGACTTGCAAG
TGACAAATGCATTTGAATTTAATTATAACTGGTATTCTATCACTTTAATG
AGGGTTTTAAGGCATACAAATGCTATAATTACtagcttttattttgattt
caagcTTTAGAGATTTACCACAGGCAaaaatcgcaaaagtttctgctcgc
gaaaagTTGAACGTCTAAAGTATTCATCTGTTAGCTTACACCCGTTTTTG
GTTTGGAGTCATTTGAGTAATTTCCCAAAGCTGAAGAGCAAGTCAAAGTT
GTACCATTGAAAACGGTCGAAATAACTAATTTAGGTAGTTTCcctaaaac
acacaaaaactACGCCCTCTCTAGGCATGCCACTTATTCACCATTGCTTA
TATTCATTTaagcttgcatccgtttttggTTTAGGGTCTTTAAAGTCATT
TCCCAAGTTTCTAGAACActccaaagttgaaaaatgCTATTTTGAATCCC
GaaatggggaatttccctaaaacaCGAAAAAAACACGCCCATTTGAAGTT
TCTTAACTGGTGGGCATTGTTTCTATACCTGTcagcttgcatccgttttt
ggTTTGGAGTCAATTGAGCAATTTCCCTAGCCAGGAGAGCATTTCAAAGT
TTGCCTGCTGAAAATGGTTTAAACGGTGAAAATCAAGActttagggaatt
tccctaaaacaCGCAAAAACTACGCCCTTTCTAGGCATGCCATTTATTCA
CCATTGTTTATATTCATGTAAGCTTGCATCCATTTTTGGGTTGGGGTCTT
TAAAGTCATTTCCCAAGTTTTTAGAACACTCCAAAGTTGAAAAATCAGCT
ATTTTGAATCCCGaaatggggaatttccctaaaacaTGGAAAAAACCACG
CCCTTTTGAAGTTACTTAATTGGTGGACATTGTTTCTATACCTGTcagct
tgcatccgtttttggTTTGGAGTCAATTGAGCAATTTCCCGAGCCTGGAG
AGCATTTCAAAGTTCCACTGTTGAAAAATTGCTGAATGTcgaaacaggga
atttccctaaataaCGATATAATCACgcccttttttggatttttttttac
aaatttttaattcttataataaagtctgtcatccgttttttatttgaagt
caatagcATTAGTCAGTAAATTTTTATTGACATTTTTCGAATCCCGATTT
TGAATCTCAGGCCCTTTAAGTGGAtttcttttcggaaaaaaagttgattc
taCTAACCATTTATGAAACATcattactctttcaaaaaaaattattttta
agaatttctttcGACTTCATGACGGGAAAAGATAGAATTTTAATATGGTT
ACAATGATACCCATCAAGTCGGTGAAATATTTACATAGAATTTCATTAAT
GTggagaaaatcgctaaaaaatacACTAgctataattttcattaaagtgc
caccgcagaagaacgatcaaataaaTGTGTCCATCTCATAGTTATCTTCT
TATAGAGATAAGGTAAagttatttatcttttttttgtcatctcttttatt
accaaaataattggcaccggaggaagcctaaagcttctgaggatggcatt
catagcttcacgcataaagcataaggaagttgggcaaacatctcataatt
ttgcgggtttttcagtattttatttctgcttaacggtagcattcctatct
tacggtctctctattgttttatcatcatcaaaaagacttttctggagtta
ttttgatctgattactcattttgaaatgtcagtttgtctttttcttatNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAACAATCAACAAACCC
AAACGAATCAAACCAACAATTTCAACTACCCAATTATATATGGCACAATA
ATCACTTCATTTCTATATACCAAAATAAAGTTACCACCGCTATTCAACAA
CTAGAAGCTACAAATGACGTTGAAACAGACTTAACAAACTTAAATGAACT
CCTCTTACAGTGTGCTCCTCTGACAGCTATGCCAACCTGAAAAACAATAA
GTTTCATTTCCAACCAAAGAAATGGTGGAACAAAGACCTTGCCGAGGCAA
AAAACAAATTGAATCAAATGTTCAATCCATGGAGAGATCAAGGATTCCCC
CGCTCGCAGGACAATGTGACATACCAGAGATACATCTTCGCCAGAAAAAG
ATTTCGGAATATGGTAAAGCGCGCAAAAAATCAAGCCAACGTTGACCATT
TCATAAATGTAgacaatcttaaaaacctggATCCAAGATCTTACTGGAAG
AGCATCAAAGTAAATAAAGCTTCAACACAAAAACTATTCACTATCAACGG
AAAGACCACAAGCTCAGAAATCACAACAGAATTCCACaatcactttgaaa
atcttttgaacACACCACGAACTCAAAATATCGATAACACAAAATCGAGA
ACCAGACTCCAGGAACTACTAACTACCTTAGAAAGATCTACTTCCACTGA
CTTTTACATCTCGGAATGTGACGTTAAACAAGCTATACTTTCtctatcaa
aaaataaaactcgGGATCCTTTCAATCTTAGAGCTGAACACTACATCCAT
GCTTCAAATGACGTGTTTATCCAACATATTACAGAATTAATCAATAAACT
CTTTCAAACTTCCACAATTCCATCGGCGCTGTGTACATCCCTAATCATCC
CTCTTGtgaaaaaccacaaaaaacCTCTTTCAGATCCCAACAACTACCGT
GGCATTAGCATCATCCCAATTATAACTAAGATTGCTGAACTAGTCATAAT
AAAGAAATGTCCAAACATAAAGAACAATAATCCATCTCAGTTCGGCTTCG
TTAACGGGTCTTCAACAATCCACGCAGAAATCCTCATCCAAGATACGATC
CATTATTACAATAAGAATGATTCTCCTGTGTACGTTTGTAGTCTTGATGC
AGAGAAAGCTTTTGACTGTTGCAATTGGCAGGTgttatttgaaaagttat
cAGTCAGAGAAGACATCCCAAATGAAATcctcaaatttttgataaaactc
TACTTGAACAGTGAATCAGCAATCATGTACAACGGTCataaaacaaaatc
tttcaatctcAGTCAAGGAGTTAGGCAGGGCTCACTACTCTCCCCCTACC
TGTATAACTTTTACACAGAAGATCTGCTTGCAAAgatcaaagatttaaaa
attggAGCAACCTTGGGAAATGGACTGAATACTTCAATAATTGCATATGC
TGATGACCTAATTCTGCTCAGCCCAACGCTAAGATCCCTTCAAGTTATGA
TAGACAAATGCATTGAGTACGGCCAGGAACATGGGCTCAAATTCAACCAT
TCGAAAACACAATTCTGCATTTCGGGAAAGTGTCAACTACCTAAACCCAC
CTTAACTATGTACAACACACAAATCCTTCCGAAACAACAACTCGAACACT
TGGGTCTTAGATGGAAAACCGAAAGAAACTTAACCATCACAAAGATGTAC
GTTTATCTGAACTTTGGGCCGTTACTTCCTCCTTGATCTCAGCAGGAATC
AGAAACACTCACCCAAACACCATTGTACATGTCTTCAACACCGTTGTTAT
ACCAAAGCTGCTCTACGGATTAGAATTTGTTAAACTGTCCAACTCCGACA
TCGCACAACTAGAAGCCCAAGCTAGGTCAAGCCTCAAAGCACTTATGGGA
GTCTCCAAGCACAGTCGAAATCTTATCAGTCAGATCTACAAAATACCAGA
CACTTCATCGTTAATCAAGAAACGTGCAATGCTACTACCACATCAACTAC
TCAAATGCAACATGTTACGAAAATATCTTCTACACCTAGCAACCCTGGAT
AGCGCTCAAAGATCCTACTCTTCAATCGATACAGTCTTTCAATTGTATGC
TCAAAATGACTTGTCCATTGTCTCTACCCTAATAGGAAACAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGTCCTGTTTCTGCCTGTTTTGTCCTATGTTTACATTTTC
GGGGAATCTCCTGCTGAATATTAGTATCTCAATCGGTTAGGTTctacttt
gtttttgtttaccaAGAGGGAGATTCCTATAGTCCGGACGGAACGTAATC
TCGGGAGAAACAACCCTCGCCTGCGGATAGGCCCCGTAACGGAGTGTTGT
TTCTTCCCAGAGCCCGCTTTTCGCCCTTAGTGGTCTACTGATCACTATTC
TGTTCGCACGCACtttaaaaaacgaaaacttattttttttctagataTAT
TTAggatttttctcttctttttttttaaatgtaaatatttACCTTCAGAG
ACTTATTATATATACTGATATATACCAGATTATTGGTGGCAAAAgagaac
aagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtagagCGACA
AGTTTTTGaacagataaaaatttctaatttgcgttgctcagagcggttaa
taactacttgtggtttaaatagggaatttcccaacaaaaaaggaaattcc
attaattcgactccctgaggtaataaaaaagacatatagagctttgtaaa
tgggtaatcagatcaaaaaaaatccggaaaagtgtttttaatgatgataa
aacaatagtaatacagtcaagctaagaatgttaccggtacaccatttaac
cggaactaaaatactgaaaaacgcgcgcaaaattatgagatgtttgccca
acttccttatgcgtgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNgtttgcccaacttccttttgcgtgaagctatgaatgcca
tcctcggaagctttaggcttcctgcggtggcaataaaATGGCGCCTCCGC
GGGATACAGCGTTGAGCTTTTCACCTCAACTTTTGTACACGAGTAGTTCA
AGCAGGTGGCTAGTCGAAACTACCTCAATAGTGAAAGATATATTTATAGT
CTTTTCTCTATGCACGAAAGAATTACCAAAACTTCAGTATTTTCACTTGA
GTTCAAATTTCAATCCGTATTTTAACTATATTGCACAATGAAACCCTCCA
CTATAGAGTTACTTTCGATATGCCGACTCTCCTCCCTAGTGccttggaaa
aagaaaatcacgaATTTCCAATTTTGTATCGCGCGGAAGGTAGGAAAAAC
ATAATTTCTCCaagaaaatactcaaaaattggAAGGTACAGGCCAATGGG
TAAACCTGTTTGTTAAAAATGGTTGATTGACAAGTAGATTCTTACGCAAT
AATCcagtaatcaaatttaaaaggaaGACGCACTTCTTTCGTTCTTTTGA
GCATAAACCAATTAGCTctctcttatttttttttttaaagaatgtttaca
agaataagatttcgtttattaaataatcttttaaaagtgttgATTGATGC
GTGAGGCCTTTTCATTGAACATATAACTCTGTCGGTGTTTTTTTAGACTG
TACCAGAGAGATCTTAGAAAAGAGAGAAAAGAGAATTTTCGTTTCAGAAC
CACTTAAAGGGCCTGAGATCCCGAATACCGAATCCCGAATACCGAACTCC
AGCGAATCTACCCTACCATTCTGctgtcattttcaaaaaaatacgaTCAA
AGAATTTGGTTAGCTGAAATTGAGAAACTGCCTCCATGGTTTATGTAGTG
CTCAGTGATAGCGCCAGCAAAACCATCATAAAGGCTTGGATACACTGTTA
CGGAAATTTGGTTtaagcaaaatttacatttatttacaCATTCTTCTTAG
GTAATACAACTTCGATACCTACAACAAAATCGACCGCCCAAACGCCTACA
TCAGAGAGCGTCATCGTTAAACAGCTGAATGAAATACGAAATAATATGAA
AGATTTTGacgataaaattaaaaaattggcTGATTGGGAAAGCTATCGCG
TACAgcgtgaaaaattaaaaacattagtCCATGTTCAGAATTCCAAAGAA
AGCGAGAATAAGAAATACAGTATGTTTCGTCCTCATGTTTTAGTTGATAA
AGTCACTTTGGATTGCAAAGAACACTATAAAGTTATCGTTCTGGTAACCT
CATTTGCGAAGCACTTCGATCGCCGCCAATGGATTCGAAAAGCATGGGGT
AACCAAACATTCTGGAACGAAACTCATGAACATtggcaagtgatttttaa
catAGGGGCTGTGCAACGGGATATGAAGGATACTTATGATAAATTAATGG
AAGAATCTCAGAAATATGGAGATATGTTGATTCTAGACATCCAAGAAGAT
TTTCATAAACTTTCTCAAAAAGTAATGACGGCTTTATTCTGGGTTTAcac
taaatttaatttcgaGTTTGTTTTCAAAAGTGATGATGATGTCTTTATCC
ATATGCAGCGCTtgttgacaaaattgaacggaacTTGGTCGAAGGAGAAT
TTTGTTGGTAACGCAATGTTTGGACAGCCTCCAGAACGGAATAAAGGACG
TTATGGTGTATCCCTTGAAGAATGGcctaagaaattttttgatcctTATT
GCAGTGGAGGTGGTTACATCTTATCGCACTATATAATTGAGCATATGATT
CCCTATTTTAATTGGGAAACCCCTTTAAAGATAGATGACGCGTATATTGG
ACATTTGGTGAACCTTGCAGGTGGAAAAGTGAAACACGAATTTAAAAGTT
TCCTTATGTATAACGTTAAACTAGAATACTCAGCAGATTTGGTTGTCACT
CATCCAGTTAAATTTCCACCGTTTCGTGAATTTCTAGAAGTTAAAGCCGG
TCTCGAACTTGGACGTATCAAAACTCATGAGATGCAAAATTTCACTCGCT
TAAGAGATTATCAAGATCACAAGAAAAAACTTCAAGCTTTGTTAAGTACT
actaaaaaaactttgactAAATCTGTAGCTCTGGATGTAAAAAGGTCAAC
ACCTACTACAGCCAGAACTTTAAAGGACGTTGGCCTTAATGTTACCACGG
CTTCCCCAAAGTAGCAGTTGAATAGTAGGCCTACAAAATCCACAAAAAGT
TGTCGCAACTCTAGAAGCTTCAgataataccttatcggggaaaacttcgt
cggggaaaattttcgtcggtgaaaattttcgtcggggaaaaattcgtcat
aTGTTgatagttggtaaacgcattaaggccggggaaaattttcgtc Coding sequence (CDS) from alignment at sc0000044:756715..769560+ >TCONS_00004374 ID=TCONS_00004374|Name=TCONS_00004374|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at sc0000044:756715..769560+ (Clytia hemisphaerica)
ATGGCCTGGAATCAAAAAGGAGAAATATCAAGGAGAAAGATGAACAAATA
TACTGCAATTTTTGCTTTTGTGGGAGGATTCGTTTTAGTGTTTGCTATTT
GGAACATCCAATATGTTTATAATTCATCTTCGACAAAGGAGCTGACAACT
TTAACTGAGGAACGAATGCAGAAGATTCAAAATGAACAAATTCTAAGAAT
CAAAGATCTTTTATTTCCTGATAAAgGTAATACAACTTCGATACCTACAA
CAAAATCGACCGCCCAAACGCCTACATCAGAGAGCGTCATCGTTAAACAG
CTGAATGAAATACGAAATAATATGAAAGATTTTGacgataaaattaaaaa
attggcTGATTGGGAAAGCTATCGCGTACAgcgtgaaaaattaaaaacat
tagtCCATGTTCAGAATTCCAAAGAAAGCGAGAATAAGAAATACAGTATG
TTTCGTCCTCATGTTTTAGTTGATAAAGTCACTTTGGATTGCAAAGAACA
CTATAAAGTTATCGTTCTGGTAACCTCATTTGCGAAGCACTTCGATCGCC
GCCAATGGATTCGAAAAGCATGGGGTAACCAAACATTCTGGAACGAAACT
CATGAACATtggcaagtgatttttaacatAGGGGCTGTGCAACGGGATAT
GAAGGATACTTATGATAAATTAATGGAAGAATCTCAGAAATATGGAGATA
TGTTGATTCTAGACATCCAAGAAGATTTTCATAAACTTTCTCAAAAAGTA
ATGACGGCTTTATTCTGGGTTTAcactaaatttaatttcgaGTTTGTTTT
CAAAAGTGATGATGATGTCTTTATCCATATGCAGCGCTtgttgacaaaat
tgaacggaacTTGGTCGAAGGAGAATTTTGTTGGTAACGCAATGTTTGGA
CAGCCTCCAGAACGGAATAAAGGACGTTATGGTGTATCCCTTGAAGAATG
GcctaagaaattttttgatcctTATTGCAGTGGAGGTGGTTACATCTTAT
CGCACTATATAATTGAGCATATGATTCCCTATTTTAATTGGGAAACCCCT
TTAAAGATAGATGACGCGTATATTGGACATTTGGTGAACCTTGCAGGTGG
AAAAGTGAAACACGAATTTAAAAGTTTCCTTATGTATAACGTTAAACTAG
AATACTCAGCAGATTTGGTTGTCACTCATCCAGTTAAATTTCCACCGTTT
CGTGAATTTCTAGAAGTTAAAGCCGGTCTCGAACTTGGACGTATCAAAAC
TCATGAGATGCAAAATTTCACTCGCTTAAGAGATTATCAAGATCACAAGA
AAAAACTTCAAGCTTTGTTAAGTACTactaaaaaaactttgactAAATCT
GTAGCTCTGGATGTAAAAAGGTCAACACCTACTACAGCCAGAACTTTAAA
GGACGTTGGCCTTAATGTTACCACGGCTTCCCCAAAGTAGATGGCCTGGA
ATCAAAAAGGAGAAATATCAAGGAGAAAGATGAACAAATATACTGCAATT
TTTGCTTTTGTGGGAGGATTCGTTTTAGTGTTTGCTATTTGGAACATCCA
ATATGTTTATAATTCATCTTCGACAAAGGAGCTGACAACTTTAACTGAGG
AACGAATGCAGAAGATTCAAAATGAACAAATTCTAAGAATCAAAGATCTT
TTATTTCCTGATAAAgGTAATACAACTTCGATACCTACAACAAAATCGAC
CGCCCAAACGCCTACATCAGAGAGCGTCATCGTTAAACAGCTGAATGAAA
TACGAAATAATATGAAAGATTTTGacgataaaattaaaaaattggcTGAT
TGGGAAAGCTATCGCGTACAgcgtgaaaaattaaaaacattagtCCATGT
TCAGAATTCCAAAGAAAGCGAGAATAAGAAATACAGTATGTTTCGTCCTC
ATGTTTTAGTTGATAAAGTCACTTTGGATTGCAAAGAACACTATAAAGTT
ATCGTTCTGGTAACCTCATTTGCGAAGCACTTCGATCGCCGCCAATGGAT
TCGAAAAGCATGGGGTAACCAAACATTCTGGAACGAAACTCATGAACATt
ggcaagtgatttttaacatAGGGGCTGTGCAACGGGATATGAAGGATACT
TATGATAAATTAATGGAAGAATCTCAGAAATATGGAGATATGTTGATTCT
AGACATCCAAGAAGATTTTCATAAACTTTCTCAAAAAGTAATGACGGCTT
TATTCTGGGTTTAcactaaatttaatttcgaGTTTGTTTTCAAAAGTGAT
GATGATGTCTTTATCCATATGCAGCGCTtgttgacaaaattgaacggaac
TTGGTCGAAGGAGAATTTTGTTGGTAACGCAATGTTTGGACAGCCTCCAG
AACGGAATAAAGGACGTTATGGTGTATCCCTTGAAGAATGGcctaagaaa
ttttttgatcctTATTGCAGTGGAGGTGGTTACATCTTATCGCACTATAT
AATTGAGCATATGATTCCCTATTTTAATTGGGAAACCCCTTTAAAGATAG
ATGACGCGTATATTGGACATTTGGTGAACCTTGCAGGTGGAAAAGTGAAA
CACGAATTTAAAAGTTTCCTTATGTATAACGTTAAACTAGAATACTCAGC
AGATTTGGTTGTCACTCATCCAGTTAAATTTCCACCGTTTCGTGAATTTC
TAGAAGTTAAAGCCGGTCTCGAACTTGGACGTATCAAAACTCATGAGATG
CAAAATTTCACTCGCTTAAGAGATTATCAAGATCACAAGAAAAAACTTCA
AGCTTTGTTAAGTACTactaaaaaaactttgactAAATCTGTAGCTCTGG
ATGTAAAAAGGTCAACACCTACTACAGCCAGAACTTTAAAGGACGTTGGC
CTTAATGTTACCACGGCTTCCCCAAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004374-exon-sc0000044-1491911889:756715..756937 | TCONS_00004374-exon-sc0000044-1491911889:756715..756937 | Clytia hemisphaerica | exon |
| TCONS_00004374-exon-sc0000044-1510915933:756715..756937 | TCONS_00004374-exon-sc0000044-1510915933:756715..756937 | Clytia hemisphaerica | exon |
| TCONS_00004374-exon-sc0000044-1575043694:756715..756937 | TCONS_00004374-exon-sc0000044-1575043694:756715..756937 | Clytia hemisphaerica | exon |
| TCONS_00004374-exon-sc0000044-1491911889:758030..758261 | TCONS_00004374-exon-sc0000044-1491911889:758030..758261 | Clytia hemisphaerica | exon |
| TCONS_00004374-exon-sc0000044-1510915933:758030..758261 | TCONS_00004374-exon-sc0000044-1510915933:758030..758261 | Clytia hemisphaerica | exon |
| TCONS_00004374-exon-sc0000044-1575043694:758030..758261 | TCONS_00004374-exon-sc0000044-1575043694:758030..758261 | Clytia hemisphaerica | exon |
| TCONS_00004374-exon-sc0000044-1491911889:768165..769560 | TCONS_00004374-exon-sc0000044-1491911889:768165..769560 | Clytia hemisphaerica | exon |
| TCONS_00004374-exon-sc0000044-1510915933:768165..769560 | TCONS_00004374-exon-sc0000044-1510915933:768165..769560 | Clytia hemisphaerica | exon |
| TCONS_00004374-exon-sc0000044-1575043694:768165..769560 | TCONS_00004374-exon-sc0000044-1575043694:768165..769560 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:756715..769560 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00004374 vs. Swiss-Prot (Human)
Match: B3GN2 (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2 OS=Homo sapiens GN=B3GNT2 PE=1 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 3.389e-20 Identity = 66/225 (29.33%), Postives = 112/225 (49.78%), Query Frame = 2
Query: 719 CKEHYKVIVLVTSFAKHFDRRQWIRKAWGNQTFWNETHEHWQVIFNIGAV--QRDMKDTYDKLMEESQKYGDMLILDIQEDFHKLSQKVMTALFWVYTKF-NFEFVFKSDDDVFIHMQRLLTKLNG---TWSKENFVGNAMFGQPPERNKGRYGVSLEEWPKKFFDPYCSGGGYILSHYIIEHMIPYFNWETPLKIDDAYIGHLVNLAGGKVKHEFKSFLMYNVK 1375
C + +++ + S HF RRQ IR++WG ++ N ++ +F +G + + D D L ES+K+ D+L+ + ++ F LS K + L WV T + EFVFK DDDVF++ +L LN T +K+ F+G+ + P R+K E + PY GGG++ S ++ + + IDD Y G + G V + K F ++++
Sbjct: 138 CAKKPFLLLAIKSLTPHFARRQAIRESWGQES--NAGNQTVVRVFLLGQTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGLYPPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKL-GLVPEKHKGFRTFDIE 359
The following BLAST results are available for this feature:
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