TCONS_00045221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045221
Unique NameTCONS_00045221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045221 ID=TCONS_00045221|Name=TCONS_00045221|organism=Clytia hemisphaerica|type=transcript|length=613bp
CACtaccagttagggtcagggttggactcGAGAGTCACAACTGAGTGCCC
TGGACCCATTTATAGTCACTTTAGGGTCAATTGGACCCactgacaaaatt
gaaaaacttcgtTTTAGTAAGATTTTAGATTGCTGCGAATAAGGTCCTTT
CTTCCCCTCTTGAACTAGATTCAGGCGGTCTGTTGGCGGTTgctctctaa
ttctccaattggCGTTGGCCATTATGaagggaaaaaaaattaaaaagggc
aAGCTAACAGTGAAAATTTATTTGCTCATGGACCTGTTGCAGAAAATGTT
GTCTCTTTTCTGTTGTTAAATGCTGAGTTTATGAAAACAAGAATACAACT
GTGTACCCTATAGCACTAGACCTGCTTACAAAGATAACATGAGTAGAAAC
AGCAAAGAGTagaaatatgaagaaaaaaagtttttgaagttTGGGGGACT
GAAAAGGGCgaaaggaatttttttcaattagcaAGGGGACCCACCAACCA
GGACACTATGTACTATCTTTCAtgcattttatataaaaactgtGAGTCTG
AAAGTCTTTAAGGAACGGTTGGAAATAAATGTGGTTTTTGTATTCTCTAT
TCTATGATCAGAG
Run BLAST on NCBI

transcript from alignment at sc0007231:1..613

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045221 ID=TCONS_00045221|Name=TCONS_00045221|organism=Clytia hemisphaerica|type=transcript|length=613bp|location=Sequence derived from alignment at sc0007231:1..613 (Clytia hemisphaerica)
CTCTGATCATAGAATAGAGAATACAAAAACCACATTTATTTCCAACCGTT
CCTTAAAGACTTTCAGACTCacagtttttatataaaatgcaTGAAAGATA
GTACATAGTGTCCTGGTTGGTGGGTCCCCTtgctaattgaaaaaaattcc
tttcGCCCTTTTCAGTCCCCCAaacttcaaaaactttttttcttcatatt
tctACTCTTTGCTGTTTCTACTCATGTTATCTTTGTAAGCAGGTCTAGTG
CTATAGGGTACACAGTTGTATTCTTGTTTTCATAAACTCAGCATTTAACA
ACAGAAAAGAGACAACATTTTCTGCAACAGGTCCATGAGCAAATAAATTT
TCACTGTTAGCTtgccctttttaattttttttcccttCATAATGGCCAAC
GccaattggagaattagagagcAACCGCCAACAGACCGCCTGAATCTAGT
TCAAGAGGGGAAGAAAGGACCTTATTCGCAGCAATCTAAAATCTTACTAA
AacgaagtttttcaattttgtcagtGGGTCCAATTGACCCTAAAGTGACT
ATAAATGGGTCCAGGGCACTCAGTTGTGACTCTCgagtccaaccctgacc
ctaactggtaGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028804XLOC_028804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045221-exon-sc0007231-1491911889:1..613TCONS_00045221-exon-sc0007231-1491911889:1..613Clytia hemisphaericaexon
TCONS_00045221-exon-sc0007231-1510915933:1..613TCONS_00045221-exon-sc0007231-1510915933:1..613Clytia hemisphaericaexon
TCONS_00045221-exon-sc0007231-1575043694:1..613TCONS_00045221-exon-sc0007231-1575043694:1..613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007231supercontigsc0007231:1..613 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.790346	0.414085	2.08803	1.44608	0.122779	0	0	0.110335	0	0	0	0	0.144827	0	0	0.146809	0.335834	0.0752582	0.109415	0	0.540928	0.0191731	0.424819	0	0	0.100187	0.0530951	0.167838	0.10232	0.110142
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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