TCONS_00044883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044883
Unique NameTCONS_00044883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044883 ID=TCONS_00044883|Name=TCONS_00044883|organism=Clytia hemisphaerica|type=transcript|length=488bp
aacacacgcaacaaccttctactcagaatcatgttcgaactcgatacttt
ttttcgggacaccctgtatttcaCTTTACTTATTTACAGGTTTGAAGAGA
TGAAACTAGCTATTCAACATTTGATGTTGATCGCAAGGCGAATCAAATTC
TAACGATCACAGCTAGGAGCAATCGATTTACAAAGCTCTGAAGTTCAATT
GGAAATGAACGAAGCCAAAGATATCAAAGACTTGGCAGCTAAACAAATTT
TCTTCTTAGCTGTCATGCTtggccatcgcaggcaaaaaaattgaatatca
gaaaagatattgttgctattgtttttgaaaacctgtGAAGCTTCTTGGTC
ATTGGTCAAGCgctggaattctattgtaatgtcacgtgacttaggtagga
ttccctacctaaccacggcacattttcagcaaaaCCACATCACAGCTAAA
TTTGGACACATTTCAAAGTTCCTGAACACAAATGGCCC
Run BLAST on NCBI

transcript from alignment at sc0006389:2..1828-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044883 ID=TCONS_00044883|Name=TCONS_00044883|organism=Clytia hemisphaerica|type=transcript|length=1827bp|location=Sequence derived from alignment at sc0006389:2..1828- (Clytia hemisphaerica)
AACACACGCAACAACCTTCTACTCAGAATCATGTTCGAACTCGATACTTT
TTTTCGGGACACCCTGTATTTCACTTTACTTATTTACAGGTTTGAAGAGA
TGAAACTAGCTATTCAACATTTGATGTTGATCGCAAGGCGAATCAAATTC
TAACGATCACAGCTAGGTATGCTTATTTTTTCATCTTTTAAACAAAAAAA
TCAGTTATTAAAACTATTTGGCAAAACCATAGAAAGAGTTTACGGCTCAA
ACCAGCAAACCAAAAACTGATCGGTTTTTTCCAAACCAAAACTGATTTTT
CTGAATTTTTAGCTATTACGGTATCATTTTTTCATAAATTAATTATAAAG
TTGTATTTTAATTAAGTACTACTCGACCTGATGCCTACCACAATTAAAAA
AATTATCGATTTCAAATCTTTTAACCCACATCCATTATAGTGTCATTTTA
GTCCAGGAGCCGCAACCGAAAAACTGTCTTTACGGTCATGCAGTGTGTCC
GGAAAAAAGCGGGAACAGATTTTAATTTGAAAATTATCAAAATTTCTACC
AGAATTTAGACCTCCCCCCCCCATTTTTTTCAAAACAACATTTTAAATAC
CTTAGGGAAGGGAGTTGATCATTCTAAACCTCAGTGCGATGATTACTTTT
TTTGCTTCGTTTAAAATCTGTTCTTCTTTTCATAAGCACACTGTATAAAG
CTCAGTCGGGACTGTAATGTTTGACTTTGGTCTACAATTTTTGTAGGAGC
AATCGATTTACAAAGCTCTGAAGTTCAATTGGAAATGAACGAAGCCAAAG
ATATCAAAGACTTGGCAGCTAAACAAGTATGTTGGTCAGCCAGAATTCAT
TATTTTTCAGTAAAATCGCAAATTGCTTTTCGCTAGTATAATTCTTGACA
TGTACTAACTAGCACTATAATTGATAGCAAGTGAATCAATTACCTTTAAA
GAGTTTTTATTGGTATTACATAATGTCGTTATCGGATGCTCCGTTGCAAA
CCTTGGAAAATTATGGTGTATCATTAAAATTCTTAAAGTAATCTTTTAAA
CTACTCTGATCCTTATAATTCTATTTCAGCCTTTAGAAGTTCACGAAACG
ATAGCAGAATGCATGATCTTCGCCAATCATATAAGCTTCTTTAAAATTTT
GTAGTTACGCATTTCTCATGTGGATATTGTATAATGTTTTTAACACTAAA
CAATTTTCTTTTGACTTAGATTTTCTTCTTAGCTGTCATGCTTGGCCATC
GCAGGCAAAAAAATTGAATATCAGAAAAGATATTGTTGCTATTGTTTTTG
AAAACCTGTGAAGCTTCTTGGTCATTGGTCAAGCGCTGGAATTCTATTGT
AATGTCACGTGACTTAGGTAGGATTCCCTACCTAACCACGGCACATTTTC
AGCAAAAGTACGCCATCTAGCCCTTTGGGTATTATAATTCTGTGTCTCCA
ACCTAAAATCATAATTTTCAAGCTAAAGCAACAGACATATTGTCTGACCC
GAAGATTAGTAGAGAATCGATAGCTTGAAAATTAAAATAGATCATTGCAT
AGGAATCAAAATAAGTCATCAATTTGACTTTAGACAGTCGACTATCTGTT
GACCTTTTTTAAATATGAAAGAAGACAATACAGAAATTGACCTTCTAACC
TTCTAAAAAAAAGTTTCAGGTTTACTTAACTTGAAAAAGGGATATTTCTA
ACAAATGGTTCAACCAAGACTTTCTCTTATACAATATTTTCAATTCTTAT
ATTTTTGTTGATCTCACCTTCAGCCACATCACAGCTAAATTTGGACACAT
TTCAAAGTTCCTGAACACAAATGGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028485XLOC_028485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044883-exon-sc0006389-1575043694:1663..1828TCONS_00044883-exon-sc0006389-1575043694:1663..1828Clytia hemisphaericaexon
TCONS_00044883-exon-sc0006389-1575043694:1003..1082TCONS_00044883-exon-sc0006389-1575043694:1003..1082Clytia hemisphaericaexon
TCONS_00044883-exon-sc0006389-1575043694:422..609TCONS_00044883-exon-sc0006389-1575043694:422..609Clytia hemisphaericaexon
TCONS_00044883-exon-sc0006389-1575043694:2..55TCONS_00044883-exon-sc0006389-1575043694:2..55Clytia hemisphaericaexon
TCONS_00044883-exon-sc0006389-1510915933:1663..1828TCONS_00044883-exon-sc0006389-1510915933:1663..1828Clytia hemisphaericaexon
TCONS_00044883-exon-sc0006389-1510915933:1003..1082TCONS_00044883-exon-sc0006389-1510915933:1003..1082Clytia hemisphaericaexon
TCONS_00044883-exon-sc0006389-1510915933:422..609TCONS_00044883-exon-sc0006389-1510915933:422..609Clytia hemisphaericaexon
TCONS_00044883-exon-sc0006389-1510915933:2..55TCONS_00044883-exon-sc0006389-1510915933:2..55Clytia hemisphaericaexon
TCONS_00044883-exon-sc0006389-1491911889:1663..1828TCONS_00044883-exon-sc0006389-1491911889:1663..1828Clytia hemisphaericaexon
TCONS_00044883-exon-sc0006389-1491911889:1003..1082TCONS_00044883-exon-sc0006389-1491911889:1003..1082Clytia hemisphaericaexon
TCONS_00044883-exon-sc0006389-1491911889:422..609TCONS_00044883-exon-sc0006389-1491911889:422..609Clytia hemisphaericaexon
TCONS_00044883-exon-sc0006389-1491911889:2..55TCONS_00044883-exon-sc0006389-1491911889:2..55Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006389supercontigsc0006389:2..1828 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.231257	0	1.35475	2.9928	3.24928	0.581216	3.46067	2.10249	1.31027	0	0	0	0.682449	0	0	0.466742	0	0	0	1.37284	2.37156	0	0	3.52256	1.01085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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