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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044759 ID=TCONS_00044759|Name=TCONS_00044759|organism=Clytia hemisphaerica|type=transcript|length=1528bp TCCAGGTCTGTTCTTTGGTAATGTTACGGTGTCAAAGCATTCTTCACATG GAAAACATCTTTAGTAAAGACATCATCTCCAATTTACTTCGGTATACGAT GACAAGCCGTGAGAAGTGGGTTTGTTATGCTATCAATGTATTACTCAAAA GCGTGATCATACAAAAGGACTCGGTCCTACACCAAATCGGTGTTTACAAA ACGCTTCAATCActcatgaaaaagaaaaaagagaccACGGATTTGAAAGA CGTGCAAGGTCAGCAGAATCAAAGCCCTGCTTCTAAGTTGGAGCAACTTA AGGCGCTGAAAGAGAAAACGATTCATAAGAATTTCTTTGAAGTTACGGAA GGGAAATACACGGGAGCATTAGCCAGCGACAAGTTTCATGAGATGACTTC CAATTCCGATAAAGACGAATTAGGTACTGGCTACGCAGAATGTGACGTCA TCCATCCAGTTTTGAATGATTTCAGTAAGATTTTGAACTCAAATATCAGT GGGTTGGAGAAGACAATATGGACCAATCAAAGTATGGACATTCAACAGGG GGCAGGTCAGAAACTTTGGATTCCGTCTTGTAAGACATTCGCCGACGAAG TTGAATCAATGAAGGATCGATCGGTTGATTATCTGGTTCATAATCTCTGT GAATGTTTGGAGGAGAATCACCATTCGCCGACCACCGTCCAATGTTTAGA GGTCGTTCTGTTCGTTGTCAACACAACGTTGCTTGAAAACACACCGAAAG CTGCCGATCAAAATACAATGCTGAGGTTCTGTGAACAGGTTGTCAAGCTA GTCGTTAATTTGGGAGATACCACAAATCCATGTTTAAAGTCCGCTATCGA CAGGATTGTCAATGCGATTTTAGCCGAACCTGTTTATGCTTCTCACTTCT CCTTAAAATTAATCGAGTTGACGTCTAGTGGTCATACCTCAAAGCTGCCG AAATCACCTGTGTGTTTGACCAATGTAAATATGTTATCCATCGCAAAGCT AGCGTCTCTTTCTCAGCCGACTGTTGCGGAACGAGTTCTTTTGAAGCAGT TGATGGTCCAAGTTGATCTACAAGACATTGACACATTGAAAGCGTTGGAG ACATACAAATCAATCACCCTGAACGGCTCGTTCATCATTTGGTCACATGA TACTCAAGAACAACAACTCACCACCAAGTTGGCCGTCAATCTGTCCAAAT ATCTCGAGAAATTCATCAGCCAGTCTGCAACATTACTACACGCGGCCAGT TTCGAACGTGGTGATACCAAGCGGACAGTTTTTCTGTTACAAGACGGAGA GTATCGGTTGACAGGCAAAGCACACGTGGTTTTGGAAGACGTTCAATTAT GTTTGGTGCTGACAAACCTACTATATCAGATCCTCACATCCAAAGTTCTC GATGATTCCCCAGACTCACAGTAAGCCATCGTTTtctttaaggccggtct ccacttgcgcgctgcgatcgcaccttttggtttcaatcctttttgcttgg aaaaaagattacgtcataaaaatgtagc Run BLAST on NCBI protein sequence of TCONS_00044759-protein >TCONS_00044759-protein ID=TCONS_00044759-protein|Name=TCONS_00044759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
QVCSLVMLRCQSILHMENIFSKDIISNLLRYTMTSREKWVCYAINVLLKS VIIQKDSVLHQIGVYKTLQSLMKKKKETTDLKDVQGQQNQSPASKLEQLK ALKEKTIHKNFFEVTEGKYTGALASDKFHEMTSNSDKDELGTGYAECDVI HPVLNDFSKILNSNISGLEKTIWTNQSMDIQQGAGQKLWIPSCKTFADEV ESMKDRSVDYLVHNLCECLEENHHSPTTVQCLEVVLFVVNTTLLENTPKA ADQNTMLRFCEQVVKLVVNLGDTTNPCLKSAIDRIVNAILAEPVYASHFS LKLIELTSSGHTSKLPKSPVCLTNVNMLSIAKLASLSQPTVAERVLLKQL MVQVDLQDIDTLKALETYKSITLNGSFIIWSHDTQEQQLTTKLAVNLSKY LEKFISQSATLLHAASFERGDTKRTVFLLQDGEYRLTGKAHVVLEDVQLC LVLTNLLYQILTSKVLDDSPDSQ Run BLAST on NCBI transcript from alignment at sc0006160:112..2298+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044759 ID=TCONS_00044759|Name=TCONS_00044759|organism=Clytia hemisphaerica|type=transcript|length=2187bp|location=Sequence derived from alignment at sc0006160:112..2298+ (Clytia hemisphaerica) TCCAGGTCTGTTCTTTGGTAATGTTACGGTGTCAAAGCATTCTTCACATG
GAAAACATCTTTAGTAAAGACATCATCTCCAATTTACTTCGGTATACGAT
GACAAGCCGTGAGAAGTGGGTTTGTTATGCTATCAATGTATTACTCAAAA
GCGTGATCATACAAAAGGACTCGGTCCTACACCAAATCGGTGTTTACAAA
ACGCTTCAATCActcatgaaaaagaaaaaagagaccACGGATTTGAAAGA
CGTGCAAGGTCAGCAGAATCAAAGCCCTGCTTCTAAGTTGGAGCAACTTA
AGGCGCTGAAAGAGAAAACGATTCATAAGAATTTCTTTGAAGTTACGGAA
GGGAAATACACGGGAGCATTAGCCAGCGACAAGTTTCATGAGATGACTTC
CAATTCCGATAAAGACGAATTAGGTACTGGCTACGCAGAATGTGACGTCA
TCCATCCAGTTTTGAATGATTTCAGTAAGATTTTGAACTCAAATATCAGT
GGGTTGGAGAAGACAATATGGACCAATCAAAGTATGGACATTCAACAGGG
GGCAGGTCAGAAACTTTGGATTCCGTCTTGTAAGACATTCGCCGACGAAG
TTGAATCAATGAAGGATCGATCGGTTGATTATCTGGTTCATAATCTCTGT
GAATGTTTGGAGGAGAATCACCATTCGCCGACCACCGTCCAATGTTTAGA
GGTCGTTCTGTTCGTTGTCAACACAACGTTGCTTGAAAACACACCGAAAG
CTGCCGATCAAAATACAATGCTGAGGTTCTGTGAACAGGTTGTCAAGCTA
GTCGTTAATTTGGGAGATACCACAAATCCATGTTTAAAGTCCGCTATCGA
CAGGATTGTCAATGCGATTTTAGCCGAACCTGTTTATGCTTCTCACTTCT
CCTTAAAATTAATCGAGTTGACGTCTAGTGGTCATACCTCAAAGCTGCCG
AAATCACCTGTGTGTTTGACCAATGTAAATATGTTATCCATCGCAAAGCT
AGCGTCTCTTTCTCAGCCGACTGTTGCGGAACGAGTTCTTTTGAAGCAGT
TGATGGTCCAAGTTGATCTACAAGAGTAAGTAAACAAACGCGCATTCCAA
GTAGGTAACAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaa
gtgaatatcagaAGAAATACTGTTACTATTacttttcgaaaacccgcgac
gcttctgattggtcaagcgctgaaattctattgtaatgtcacatgACTTA
GGTAggacttttcagcaaaagtacgccatctagctattcgggctttataa
atccaTGGTAGGTAATAGTGCATTAATTTCTTTCATGTATAGCCAAAAGA
CAATGTCGTTTGTTTATTTTATCTGACCGAACGTACGATTAAGTAGCAGA
AAGTTTTCTCTTTACTTTATCTGATAAAATCTTTACATGCGTTTAGACGT
GCTGTTAGATTTTCTCTGAATGTTTCGGCTACTTTTAAGAGACTCGTGGA
TTTTCTGCCTAGTTTtttatttctagtttttttacttttctagtAGTACT
TTGGACTTTTGCCATATTGAAAAACCTCGGTGTTTTCTATAAAGAAAAAC
TCTTTCCCGTTAGGATTTGCTGAGGGTGCACCCCCGTGTGCCAAGAACGG
AAACTCGACCTCCTCTTATTTGCTTTTCTAAAGATAGAGCAGTTAAAGGA
ACTACTTTTTCTACGTCCTCTTCTTTCATCATAGCATTGACACATTGAAA
GCGTTGGAGACATACAAATCAATCACCCTGAACGGCTCGTTCATCATTTG
GTCACATGATACTCAAGAACAACAACTCACCACCAAGTTGGCCGTCAATC
TGTCCAAATATCTCGAGAAATTCATCAGCCAGTCTGCAACATTACTACAC
GCGGCCAGTTTCGAACGTGGTGATACCAAGCGGACAGTTTTTCTGTTACA
AGACGGAGAGTATCGGTTGACAGGCAAAGCACACGTGGTTTTGGAAGACG
TTCAATTATGTTTGGTGCTGACAAACCTACTATATCAGATCCTCACATCC
AAAGTTCTCGATGATTCCCCAGACTCACAGTAAGCCATCGTTTtctttaa
ggccggtctccacttgcgcgctgcgatcgcaccttttggtttcaatcctt
tttgcttggaaaaaagattacgtcataaaaatgtagc Coding sequence (CDS) from alignment at sc0006160:112..2298+ >TCONS_00044759 ID=TCONS_00044759|Name=TCONS_00044759|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0006160:112..2298+ (Clytia hemisphaerica) CAGGTCTGTTCTTTGGTAATGTTACGGTGTCAAAGCATTCTTCACATGGA AAACATCTTTAGTAAAGACATCATCTCCAATTTACTTCGGTATACGATGA CAAGCCGTGAGAAGTGGGTTTGTTATGCTATCAATGTATTACTCAAAAGC GTGATCATACAAAAGGACTCGGTCCTACACCAAATCGGTGTTTACAAAAC GCTTCAATCActcatgaaaaagaaaaaagagaccACGGATTTGAAAGACG TGCAAGGTCAGCAGAATCAAAGCCCTGCTTCTAAGTTGGAGCAACTTAAG GCGCTGAAAGAGAAAACGATTCATAAGAATTTCTTTGAAGTTACGGAAGG GAAATACACGGGAGCATTAGCCAGCGACAAGTTTCATGAGATGACTTCCA ATTCCGATAAAGACGAATTAGGTACTGGCTACGCAGAATGTGACGTCATC CATCCAGTTTTGAATGATTTCAGTAAGATTTTGAACTCAAATATCAGTGG GTTGGAGAAGACAATATGGACCAATCAAAGTATGGACATTCAACAGGGGG CAGGTCAGAAACTTTGGATTCCGTCTTGTAAGACATTCGCCGACGAAGTT GAATCAATGAAGGATCGATCGGTTGATTATCTGGTTCATAATCTCTGTGA ATGTTTGGAGGAGAATCACCATTCGCCGACCACCGTCCAATGTTTAGAGG TCGTTCTGTTCGTTGTCAACACAACGTTGCTTGAAAACACACCGAAAGCT GCCGATCAAAATACAATGCTGAGGTTCTGTGAACAGGTTGTCAAGCTAGT CGTTAATTTGGGAGATACCACAAATCCATGTTTAAAGTCCGCTATCGACA GGATTGTCAATGCGATTTTAGCCGAACCTGTTTATGCTTCTCACTTCTCC TTAAAATTAATCGAGTTGACGTCTAGTGGTCATACCTCAAAGCTGCCGAA ATCACCTGTGTGTTTGACCAATGTAAATATGTTATCCATCGCAAAGCTAG CGTCTCTTTCTCAGCCGACTGTTGCGGAACGAGTTCTTTTGAAGCAGTTG ATGGTCCAAGTTGATCTACAAGACATTGACACATTGAAAGCGTTGGAGAC ATACAAATCAATCACCCTGAACGGCTCGTTCATCATTTGGTCACATGATA CTCAAGAACAACAACTCACCACCAAGTTGGCCGTCAATCTGTCCAAATAT CTCGAGAAATTCATCAGCCAGTCTGCAACATTACTACACGCGGCCAGTTT CGAACGTGGTGATACCAAGCGGACAGTTTTTCTGTTACAAGACGGAGAGT ATCGGTTGACAGGCAAAGCACACGTGGTTTTGGAAGACGTTCAATTATGT TTGGTGCTGACAAACCTACTATATCAGATCCTCACATCCAAAGTTCTCGA TGATTCCCCAGACTCACAGTAACAGGTCTGTTCTTTGGTAATGTTACGGT GTCAAAGCATTCTTCACATGGAAAACATCTTTAGTAAAGACATCATCTCC AATTTACTTCGGTATACGATGACAAGCCGTGAGAAGTGGGTTTGTTATGC TATCAATGTATTACTCAAAAGCGTGATCATACAAAAGGACTCGGTCCTAC ACCAAATCGGTGTTTACAAAACGCTTCAATCActcatgaaaaagaaaaaa gagaccACGGATTTGAAAGACGTGCAAGGTCAGCAGAATCAAAGCCCTGC TTCTAAGTTGGAGCAACTTAAGGCGCTGAAAGAGAAAACGATTCATAAGA ATTTCTTTGAAGTTACGGAAGGGAAATACACGGGAGCATTAGCCAGCGAC AAGTTTCATGAGATGACTTCCAATTCCGATAAAGACGAATTAGGTACTGG CTACGCAGAATGTGACGTCATCCATCCAGTTTTGAATGATTTCAGTAAGA TTTTGAACTCAAATATCAGTGGGTTGGAGAAGACAATATGGACCAATCAA AGTATGGACATTCAACAGGGGGCAGGTCAGAAACTTTGGATTCCGTCTTG TAAGACATTCGCCGACGAAGTTGAATCAATGAAGGATCGATCGGTTGATT ATCTGGTTCATAATCTCTGTGAATGTTTGGAGGAGAATCACCATTCGCCG ACCACCGTCCAATGTTTAGAGGTCGTTCTGTTCGTTGTCAACACAACGTT GCTTGAAAACACACCGAAAGCTGCCGATCAAAATACAATGCTGAGGTTCT GTGAACAGGTTGTCAAGCTAGTCGTTAATTTGGGAGATACCACAAATCCA TGTTTAAAGTCCGCTATCGACAGGATTGTCAATGCGATTTTAGCCGAACC TGTTTATGCTTCTCACTTCTCCTTAAAATTAATCGAGTTGACGTCTAGTG GTCATACCTCAAAGCTGCCGAAATCACCTGTGTGTTTGACCAATGTAAAT ATGTTATCCATCGCAAAGCTAGCGTCTCTTTCTCAGCCGACTGTTGCGGA ACGAGTTCTTTTGAAGCAGTTGATGGTCCAAGTTGATCTACAAGACATTG ACACATTGAAAGCGTTGGAGACATACAAATCAATCACCCTGAACGGCTCG TTCATCATTTGGTCACATGATACTCAAGAACAACAACTCACCACCAAGTT GGCCGTCAATCTGTCCAAATATCTCGAGAAATTCATCAGCCAGTCTGCAA CATTACTACACGCGGCCAGTTTCGAACGTGGTGATACCAAGCGGACAGTT TTTCTGTTACAAGACGGAGAGTATCGGTTGACAGGCAAAGCACACGTGGT TTTGGAAGACGTTCAATTATGTTTGGTGCTGACAAACCTACTATATCAGA TCCTCACATCCAAAGTTCTCGATGATTCCCCAGACTCACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00044759-exon-sc0006160-1491911889:112..1186 | TCONS_00044759-exon-sc0006160-1491911889:112..1186 | Clytia hemisphaerica | exon |
TCONS_00044759-exon-sc0006160-1510915933:112..1186 | TCONS_00044759-exon-sc0006160-1510915933:112..1186 | Clytia hemisphaerica | exon |
TCONS_00044759-exon-sc0006160-1575043694:112..1186 | TCONS_00044759-exon-sc0006160-1575043694:112..1186 | Clytia hemisphaerica | exon |
TCONS_00044759-exon-sc0006160-1491911889:1846..2298 | TCONS_00044759-exon-sc0006160-1491911889:1846..2298 | Clytia hemisphaerica | exon |
TCONS_00044759-exon-sc0006160-1510915933:1846..2298 | TCONS_00044759-exon-sc0006160-1510915933:1846..2298 | Clytia hemisphaerica | exon |
TCONS_00044759-exon-sc0006160-1575043694:1846..2298 | TCONS_00044759-exon-sc0006160-1575043694:1846..2298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0006160 | supercontig | sc0006160:112..2298 + |
Blast
The following BLAST results are available for this feature:
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