TCONS_00044514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044514
Unique NameTCONS_00044514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044514 ID=TCONS_00044514|Name=TCONS_00044514|organism=Clytia hemisphaerica|type=transcript|length=371bp
CTTTAACAATTGGAACAAGTATGGCAGAAGGTTAACAGTCCAAACCAGAG
AAATAACTTGAACGTTTATATCTTACCAGGCTATCGAATTAATCAACAAT
AACAGATATGGTAACGGAACAGCTATTTTCACCAACTCTGGTTCAGCTGC
ACGTAAATTCACACAAGAAGTTGATGTTGGACAAATTGGTGTCAATGTTC
CCATCCCCGTACCTTTACCCATGTTTTCTTTCACCGGATCTCGTGGATCT
TTCCGTGGAGATATGAACTTTTACGGAAAAGCTggaATTCACTTTTACTC
GCAATGGAAGACCGTCACAAGTTTATGGCGCGAAGATGACGCGACAGACA
AAAAAGCACAAGTCTCCTTCC
Run BLAST on NCBI

transcript from alignment at sc0005703:3186..3888+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044514 ID=TCONS_00044514|Name=TCONS_00044514|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at sc0005703:3186..3888+ (Clytia hemisphaerica)
CTTTAACAATTGGAACAAGTATGGCAGAAGGTTAACAGTCCAAACCAGAG
AAATAACTTGAACGTTTATATCTTACCAGGCTATCGAATTAATCAACAAT
AACAGATATGGTAACGGAACAGCTATTTTCACCAACTCTGGTTCAGCTGC
ACGTAAATTCACACAAGAAGTTGATGTTGGACAAATTGGTGTCAATGTTC
CCATCCCCGTACCTTTACCCATGTTTTCTTTCACCGGATCTCGTGGATCT
TTCCGTGGAGATATGAACTTTTACGGAAAAGCTGTAAGTTCCAGTTCCGT
TCTCTGCTGCTGTCGGTGCGCTATTTGTGCCCTATGTTGACAGGTGTTTG
GCAAAGTAATGTTCGAGTATTATCATCGTTACTTTGTTACTTGTGAAGGA
AATTTCGCGATGTAAGCACGATGTCCATCAGAAAGGAAACAGGCAATTTT
CtgctatttttaaatttttaatacCAAAAAAAGGAATGCTACTTTTGTAG
GAAGTTGGGTGTAAAATGTTTAATTATGTTCTCAAAGTcactttttgaaa
taaatgtCTGAGTCTATGTGAACAATATGCCTTAAGGAATaactgatttt
gaaatttttttttagggaATTCACTTTTACTCGCAATGGAAGACCGTCAC
AAGTTTATGGCGCGAAGATGACGCGACAGACAAAAAAGCACAAGTCTCCT
TCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028137XLOC_028137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044514-exon-sc0005703-1491911889:3186..3468TCONS_00044514-exon-sc0005703-1491911889:3186..3468Clytia hemisphaericaexon
TCONS_00044514-exon-sc0005703-1510915933:3186..3468TCONS_00044514-exon-sc0005703-1510915933:3186..3468Clytia hemisphaericaexon
TCONS_00044514-exon-sc0005703-1575043694:3186..3468TCONS_00044514-exon-sc0005703-1575043694:3186..3468Clytia hemisphaericaexon
TCONS_00044514-exon-sc0005703-1491911889:3801..3888TCONS_00044514-exon-sc0005703-1491911889:3801..3888Clytia hemisphaericaexon
TCONS_00044514-exon-sc0005703-1510915933:3801..3888TCONS_00044514-exon-sc0005703-1510915933:3801..3888Clytia hemisphaericaexon
TCONS_00044514-exon-sc0005703-1575043694:3801..3888TCONS_00044514-exon-sc0005703-1575043694:3801..3888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005703supercontigsc0005703:3186..3888 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1011.01	1023.75	1251.88	1240.95	504.495	406.085	306.894	305.588	280.313	296.65	230.861	325.276	169.964	176.892	188.778	211.258	241.728	260.193	155.218	141.201	330.248	355.012	451.214	440.555	162.206	161.507	379.781	364.768	267.08	255.838
Blast
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BLAST of TCONS_00044514 vs. Swiss-Prot (Human)
Match: MMSA (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens GN=ALDH6A1 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.243e-43
Identity = 66/90 (73.33%), Postives = 78/90 (86.67%), Query Frame = 2 
Query:   77 QAIELINNNRYGNGTAIFTNSGSAARKFTQEVDVGQIGVNVPIPVPLPMFSFTGSRGSFRGDMNFYGKAGIHFYSQWKTVTSLWREDDAT 346
            +AI+++NNN YGNGTAIFT +G+ ARK+   VDVGQ+GVNVPIPVPLPMFSFTGSR SFRGD NFYGK GI FY+Q KT+TS W+E+DAT
Sbjct:  433 EAIQIVNNNPYGNGTAIFTTNGATARKYAHLVDVGQVGVNVPIPVPLPMFSFTGSRSSFRGDTNFYGKQGIQFYTQLKTITSQWKEEDAT 522
The following BLAST results are available for this feature:
BLAST of TCONS_00044514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMSA4.243e-4373.33Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
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