TCONS_00044402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044402
Unique NameTCONS_00044402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044402 ID=TCONS_00044402|Name=TCONS_00044402|organism=Clytia hemisphaerica|type=transcript|length=770bp
CATAAACTATTCTTGGGCTACAGTATGATACCATAGTTTGCCAAGTTACA
AAATTCTGAGATTGTCtagaaaaagtccaaaaactgTAAATACGATTATA
CTGATTATGATTTTGATGCCATGGTGCTCAAAAGGCATTCCAGCAgcaaa
aaagtgataaaaaatgataaatgagttttgaaaactttgggCCAATCAGA
TACCGATATCTGGGTCACATGTTATATTTTCTCCAGGTACCAGAATGTGG
AATTCTGCTGAATAAACTTTTCACAATATTATTTGCCTTTATTTAGCAAT
GGTGATCTGCTATGAGACTAGTCTTAGCTTAGATTTTCCAAAGGCTTATt
gcttttatttttcacatattaCAATAGGGTTTCCAGGGGTCTGCATGAAT
ATGATATCTTGGAGGTGTTCATTTCCTCATCATAAGCTATTTTCCAgccc
ctttttcacaaaatgttactttccagaGGGTTCTACCTAGCCTGGGaatc
acctcacaaagttctacgatcatagagcttggtgcaggtagattagtctg
acacagaatgttataaacaatCTGTGTGTGAACTCCTGTTGACAgaattt
ctgaactttggaaacccaggcaaaagaattaaaaaatgtgctcacttaac
acacataatcaacttagcATAAAAACTtattcacaagctctaaagactac
taaaaaccacatcaaaacatcagccccatgtatttagacttccaacagcc
attttgtttctaaataaatc
Run BLAST on NCBI

transcript from alignment at sc0005520:2734..3503

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044402 ID=TCONS_00044402|Name=TCONS_00044402|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at sc0005520:2734..3503 (Clytia hemisphaerica)
gatttatttagaaacaaaatggctgttggaagtctaaatacatggggctg
atgttttgatgtggtttttagtagtctttagagcttgtgaataAGTTTTT
ATgctaagttgattatgtgtgttaagtgagcacattttttaattcttttg
cctgggtttccaaagttcagaaattcTGTCAACAGGAGTTCACACACAGa
ttgtttataacattctgtgtcagactaatctacctgcaccaagctctatg
atcgtagaactttgtgaggtgattCCCAGGCTAGGTAGAACCCtctggaa
agtaacattttgtgaaaaaggggcTGGAAAATAGCTTATGATGAGGAAAT
GAACACCTCCAAGATATCATATTCATGCAGACCCCTGGAAACCCTATTGt
aatatgtgaaaaataaaagcaATAAGCCTTTGGAAAATCTAAGCTAAGAC
TAGTCTCATAGCAGATCACCATTGCTAAATAAAGGCAAATAATATTGTGA
AAAGTTTATTCAGCAGAATTCCACATTCTGGTACCTGGAGAAAATATAAC
ATGTGACCCAGATATCGGTATCTGATTGGcccaaagttttcaaaactcat
ttatcattttttatcacttttttgcTGCTGGAATGCCTTTTGAGCACCAT
GGCATCAAAATCATAATCAGTATAATCGTATTTAcagtttttggactttt
tctaGACAATCTCAGAATTTTGTAACTTGGCAAACTATGGTATCATACTG
TAGCCCAAGAATAGTTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028034XLOC_028034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044402-exon-sc0005520-1491911889:2734..3503TCONS_00044402-exon-sc0005520-1491911889:2734..3503Clytia hemisphaericaexon
TCONS_00044402-exon-sc0005520-1510915933:2734..3503TCONS_00044402-exon-sc0005520-1510915933:2734..3503Clytia hemisphaericaexon
TCONS_00044402-exon-sc0005520-1575043694:2734..3503TCONS_00044402-exon-sc0005520-1575043694:2734..3503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005520supercontigsc0005520:2734..3503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.127521	0.0771475	0.220771	0.176252	0.33936	0.243916	0.688599	0.2182	0.0671361	0.399005	0.691364	0.596354	0.219641	0.290617	0.0775668	0.194242	0.147593	0.492026	0	0.196472	0.381378	0	0.267283	0.826808	0.244706	0.719686	0.0954195	1.81305	2.09312
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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