TCONS_00044345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044345
Unique NameTCONS_00044345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044345 ID=TCONS_00044345|Name=TCONS_00044345|organism=Clytia hemisphaerica|type=transcript|length=328bp
AACACGGATTGTCCATACGTCGAAATAACGTGCCGTTTTACGGGATGTGA
CGTATGCTTCTTACGTAAAGCGAAACAACAACACGAACAAAATTGTCCGA
TGAAAGAGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAAGAAAGTGAT
GAACAGAATCATTATCGACAATGTTTGAAATATCCAACGAAATGTCCAAA
TCAAGGATGCGAAAAAGTATTTCCAAAGAATGCGgttTCTGGTCATCAAA
ACACAGAATGTCTTTTTCAGACAATTAAatgtgaatttgaaaattttggt
tgcAATGTTCAGgttctTCGAAAAGACT
Run BLAST on NCBI

protein sequence of TCONS_00044345-protein

>TCONS_00044345-protein ID=TCONS_00044345-protein|Name=TCONS_00044345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
NTDCPYVEITCRFTGCDVCFLRKAKQQHEQNCPMKEVNCVYCQMAFKESD
EQNHYRQCLKYPTKCPNQGCEKVFPKNAVSGHQNTECLFQTIKCEFENFG
CNVQVLRKD
Run BLAST on NCBI

transcript from alignment at sc0005421:13..4420-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044345 ID=TCONS_00044345|Name=TCONS_00044345|organism=Clytia hemisphaerica|type=transcript|length=4408bp|location=Sequence derived from alignment at sc0005421:13..4420- (Clytia hemisphaerica)
AACACGGATTGTCCATACGTCGAAATAACGTGCCGTTTTACGGGATGTGA CGTATGCTTCTTACGTAAAGCGAAACAACAACACGAACAAAATTGTCCGA TGAAAGAGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAAGAAAGTGAT GAACAGGTAAAATTGCTTTGCTCTAAATATTACAATACAAAGCAACAATG GCAGTAATCTTGGATAAATTCCGAACTAATCATGCAAGCACAACTAGCAA ACGTAGAAAAGATCCGATGAAACCAATTTCAGTTTCAATCATAAGTCCCA GAAAAATTCTAGAAAACCTGATACAGTAAGAAACGATATAATCTGCATAA GTGATCCTGAGAATGTCAATATGATTGAAAGCTACGCGAGTCTTTCTGTC CTCATAGGTTAAATGTCATACAAAGCTAAACTTTCATGTTTATGGTCAAT AGACGAGATGGATAATATAGGGGGGGGCGTACGGGTTTGTCGGTGTGTCG GTATTGACCCTTTTTTGCATCGGTGTTTCGGTGTTTTAAGTAAAAAGTGT CAGTATTTCGGTGTTGGACCTGCCTTGCGGTGACGGTAAAATTGATTTTT TGGGTCGGTATTTCGGTGATTCGAGAAATACTGGCGGNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCGGTGTCGG TGTTTTAGGAAAATTTTGTCGGTATTACGGTGATTTAAGAAAAATCTGTC GGTATTTCGGTGTTGGCAACCCTCGTACGCCCCCCACAATATAGATGTTT AAATCCCCCGTTAACGTGTTTATCAGAATAATCAAAAGCGTGAGATCTGT AGAACTTTACTGGGAAAAACAATAAATTCGGCACATAGGGGAGAAACTCA CGTAGTCCTCTGAGCTTTACACACTATCATTTGTGTTTTGAAAAGCTGGT AAAAACCCATGCCATTTTTTGATAGAACAATATATACTATTGTTTGAAAA AAATTCTAAAATCTGGATAGAAAAGTACAAACTTTCGGGGAAGAGCTTTC ACTCCAAATCATTATCGTTTTTGAATGGTAAATTAAATGTGTTTATAATC CGTGATGTCATAAATCTAATAATGAAGAGATTTTCCATCTTAAATTCTAG AATCATTATCGACAATGTTTGAAATATCCAACGAAATGTCCAAATCAAGG ATGCGAAAAAGTATTTCCAAAGAATGCGGTATGTAAACCTAGGCTGTCAG CACCCTATACTTGTTTTGTTATAAACGATGTGAATCGACCTCAAAAACCA CGTCTGCTTAGCTTAGTTTTTTTTTTAGTTTTGAGTGGAAACCAAAGCTT GATGTAATTTTTTTAGAAAATAGCTCGGAAAATAGGTCACAATTTTCTAA ATTTTTCTTTCAGGTTTCTGGTCATCAAAACACAGAATGTCTTTTTCAGA CAATTAAATGTGAATTTGAAAATTTTGGTTGCAATGTTCAGGTATTAACT TTTTTATCTGGTAAATCCAAAGCACTGAGATACGTCATACGGGGACCGTC GTGGACGTTATCATATATATTTCGCAGTGATGTAGAGATGGACTCTGTTA ATCAAATTATAGACCCAAACAGACGAATTTTTTCTAAAGTAACTTTTACG TACATATGAATTATCATTGTTTTGATCATCTTTTTTTTTCAGGTTCTTCG AAAAGACT

Coding sequence (CDS) from alignment at sc0005421:13..4420-

>TCONS_00044345 ID=TCONS_00044345|Name=TCONS_00044345|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at sc0005421:13..4420- (Clytia hemisphaerica)
GTTCTTCGAAAAGACGTTTCTGGTCATCAAAACACAGAATGTCTTTTTCA
GACAATTAAATGTGAATTTGAAAATTTTGGTTGCAATGTTCAGAATCATT
ATCGACAATGTTTGAAATATCCAACGAAATGTCCAAATCAAGGATGCGAA
AAAGTATTTCCAAAGAATGCGAACACGGATTGTCCATACGTCGAAATAAC
GTGCCGTTTTACGGGATGTGACGTATGCTTCTTACGTAAAGCGAAACAAC
AACACGAACAAAATTGTCCGATGAAAGAGGTGAACTGCGTGTACTGTCAA
ATGGCTTTTAAAGAAAGTGATGAACAGGTTCTTCGAAAAGACGTTTCTGG
TCATCAAAACACAGAATGTCTTTTTCAGACAATTAAATGTGAATTTGAAA
ATTTTGGTTGCAATGTTCAGAATCATTATCGACAATGTTTGAAATATCCA
ACGAAATGTCCAAATCAAGGATGCGAAAAAGTATTTCCAAAGAATGCGAA
CACGGATTGTCCATACGTCGAAATAACGTGCCGTTTTACGGGATGTGACG
TATGCTTCTTACGTAAAGCGAAACAACAACACGAACAAAATTGTCCGATG
AAAGAGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAAGAAAGTGATGA
ACAGGTTCTTCGAAAAGACGTTTCTGGTCATCAAAACACAGAATGTCTTT
TTCAGACAATTAAATGTGAATTTGAAAATTTTGGTTGCAATGTTCAGAAT
CATTATCGACAATGTTTGAAATATCCAACGAAATGTCCAAATCAAGGATG
CGAAAAAGTATTTCCAAAGAATGCGAACACGGATTGTCCATACGTCGAAA
TAACGTGCCGTTTTACGGGATGTGACGTATGCTTCTTACGTAAAGCGAAA
CAACAACACGAACAAAATTGTCCGATGAAAGAGGTGAACTGCGTGTACTG
TCAAATGGCTTTTAAAGAAAGTGATGAACAGGTTCTTCGAAAAGACGTTT
CTGGTCATCAAAACACAGAATGTCTTTTTCAGACAATTAAATGTGAATTT
GAAAATTTTGGTTGCAATGTTCAGAATCATTATCGACAATGTTTGAAATA
TCCAACGAAATGTCCAAATCAAGGATGCGAAAAAGTATTTCCAAAGAATG
CGAACACGGATTGTCCATACGTCGAAATAACGTGCCGTTTTACGGGATGT
GACGTATGCTTCTTACGTAAAGCGAAACAACAACACGAACAAAATTGTCC
GATGAAAGAGGTGAACTGCGTGTACTGTCAAATGGCTTTTAAAGAAAGTG
ATGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027978XLOC_027978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044345-exon-sc0005421-1575043694:4265..4420TCONS_00044345-exon-sc0005421-1575043694:4265..4420Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1575043694:493..570TCONS_00044345-exon-sc0005421-1575043694:493..570Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1575043694:230..307TCONS_00044345-exon-sc0005421-1575043694:230..307Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1575043694:13..28TCONS_00044345-exon-sc0005421-1575043694:13..28Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1510915933:4265..4420TCONS_00044345-exon-sc0005421-1510915933:4265..4420Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1510915933:493..570TCONS_00044345-exon-sc0005421-1510915933:493..570Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1510915933:230..307TCONS_00044345-exon-sc0005421-1510915933:230..307Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1510915933:13..28TCONS_00044345-exon-sc0005421-1510915933:13..28Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1491911889:4265..4420TCONS_00044345-exon-sc0005421-1491911889:4265..4420Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1491911889:493..570TCONS_00044345-exon-sc0005421-1491911889:493..570Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1491911889:230..307TCONS_00044345-exon-sc0005421-1491911889:230..307Clytia hemisphaericaexon
TCONS_00044345-exon-sc0005421-1491911889:13..28TCONS_00044345-exon-sc0005421-1491911889:13..28Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044345-proteinTCONS_00044345-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005421supercontigsc0005421:13..4420 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.457733 0 0 0 0.352144 0 0 0 0.440712 0 0 3.25189 4.54903 0 0 0.521224 0.018979 2.39978 4.74816 0.0739421 0 0.782241 1.04821 0 0.444503 0 0 0.429165 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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