TCONS_00044336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044336
Unique NameTCONS_00044336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044336 ID=TCONS_00044336|Name=TCONS_00044336|organism=Clytia hemisphaerica|type=transcript|length=269bp
CGAGaatatatttaaaattattatatAGATGTACAATAAAAACTCCGGCC
CGACGTCTGAAGGGCAAGGATTAAAACAataaagtgtgtcaaaatcaaat
gaaatatGAGTTAAAATTTATAGTAAAAACGTTACCGAAAATGTCGAGAC
TAAATTAGCAAAGGCACAAAGAAAATGGCTGATTTACACCCATAAGATTC
TGGCCTACAGATTCTCAGGGTGGAAATTAACCCTGTTCTCTGCTGCCGAG
CAGTAAGGTCATGATAAAA
Run BLAST on NCBI

transcript from alignment at sc0005398:2..270

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044336 ID=TCONS_00044336|Name=TCONS_00044336|organism=Clytia hemisphaerica|type=transcript|length=269bp|location=Sequence derived from alignment at sc0005398:2..270 (Clytia hemisphaerica)
TTTTATCATGACCTTACTGCTCGGCAGCAGAGAACAGGGTTAATTTCCAC
CCTGAGAATCTGTAGGCCAGAATCTTATGGGTGTAAATCAGCCATTTTCT
TTGTGCCTTTGCTAATTTAGTCTCGACATTTTCGGTAACGTTTTTACTAT
AAATTTTAACTCatatttcatttgattttgacacactttatTGTTTTAAT
CCTTGCCCTTCAGACGTCGGGCCGGAGTTTTTATTGTACATCTatataat
aattttaaatatattCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027969XLOC_027969Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044336-exon-sc0005398-1491911889:2..270TCONS_00044336-exon-sc0005398-1491911889:2..270Clytia hemisphaericaexon
TCONS_00044336-exon-sc0005398-1510915933:2..270TCONS_00044336-exon-sc0005398-1510915933:2..270Clytia hemisphaericaexon
TCONS_00044336-exon-sc0005398-1575043694:2..270TCONS_00044336-exon-sc0005398-1575043694:2..270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005398supercontigsc0005398:2..270 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.20181	0.879371	0.0289317	0	0.77524	0.878684	0	2.07576	0.968858	0.548389	3.63148	1.68768	1.84322	1.2138	0.326428	0.396178	1.01701	0	3.05548	0	0	0.813319	1.54646	0.907096	2.09789	2.42833	0	0	2.14963	1.30016
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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