TCONS_00044237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044237
Unique NameTCONS_00044237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044237 ID=TCONS_00044237|Name=TCONS_00044237|organism=Clytia hemisphaerica|type=transcript|length=882bp
AGGTCCCATTCGGCCCCATGGTGCCAAGGGAAAGTGCTACAATCGCCGCC
ACAAACGGAAGTCCAAAGGTCCACAATAACAATTTGTAATCACATTTACC
AAAATCCATATTGGTtcgaaaataaatcaaaacaaatgcatTAATGGAGA
CAACGTTAACCATAAGGTTTTGGGCTGTTATAAATTCAGCTAGCATAAAT
CCATAAAATTCGCAAAGGCTTTTGGGATACGGGTGATCATGTGTTATGAA
GATATGTAAATGATCCAAGGAATGGCATATATTAAACAGACCATCACATA
TTGCCAGATAAACAACAAAACGTTCGCTTTTATTCCACATAAAAAACGTT
CGAAAACTTTTCGTCTTAAATGAAAATACCAATACACAAATAGCGGCAAT
CAAACTTAGAAATATACACGTTAAAGCTGGGATGTGGATAGCAGCAAATT
GTCCTTGCTCGATCCCGTAGACGGGTAGATCCCAGCCGTCAATCAATACT
TTCTTAGTAGGTGTCATAGCCATCTGTGTACTGATGGATTGGTTATTTCC
TCTTGTATTTACGATTAGCATTTTCACCGCAAGATTgccaaaaccaaaac
caaacGTCAAATAAAATCCTTGTATCCtgtatcaaaacaaaacaggtGGA
TAGGTATTAGTCTCCGAAGGAGTAGGAACCGCCGAAGTATTTCACAAATT
AAACGTATAAGATCATTTTTTCCTGTGGTAACCTACCAGATCATGATATG
TACCTCGACACTCAAACGACACCGAAAATCTCGAATCGTAATAACACGGT
TGATATTGAAACCAAATCTCCCAGGACTGACGTCAAAGCGTGAAAACGAA
AACTACTATCATActacagttttgaaaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00044237-protein

>TCONS_00044237-protein ID=TCONS_00044237-protein|Name=TCONS_00044237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MLIVNTRGNNQSISTQMAMTPTKKVLIDGWDLPVYGIEQGQFAAIHIPAL
TCIFLSLIAAICVLVFSFKTKSFRTFFMWNKSERFVVYLAICDGLFNICH
SLDHLHIFITHDHPYPKSLCEFYGFMLAEFITAQNLMVNVVSINAFVLIY
FRTNMDFGKCDYKLLLWTFGLPFVAAIVALSLGTMGPNGT
Run BLAST on NCBI

transcript from alignment at sc0005222:2816..3697

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044237 ID=TCONS_00044237|Name=TCONS_00044237|organism=Clytia hemisphaerica|type=transcript|length=882bp|location=Sequence derived from alignment at sc0005222:2816..3697 (Clytia hemisphaerica)
atttttttcaaaactgtagTATGATAGTAGTTTTCGTTTTCACGCTTTGA CGTCAGTCCTGGGAGATTTGGTTTCAATATCAACCGTGTTATTACGATTC GAGATTTTCGGTGTCGTTTGAGTGTCGAGGTACATATCATGATCTGGTAG GTTACCACAGGAAAAAATGATCTTATACGTTTAATTTGTGAAATACTTCG GCGGTTCCTACTCCTTCGGAGACTAATACCTATCCacctgttttgttttg atacaGGATACAAGGATTTTATTTGACgtttggttttggttttggcAATC TTGCGGTGAAAATGCTAATCGTAAATACAAGAGGAAATAACCAATCCATC AGTACACAGATGGCTATGACACCTACTAAGAAAGTATTGATTGACGGCTG GGATCTACCCGTCTACGGGATCGAGCAAGGACAATTTGCTGCTATCCACA TCCCAGCTTTAACGTGTATATTTCTAAGTTTGATTGCCGCTATTTGTGTA TTGGTATTTTCATTTAAGACGAAAAGTTTTCGAACGTTTTTTATGTGGAA TAAAAGCGAACGTTTTGTTGTTTATCTGGCAATATGTGATGGTCTGTTTA ATATATGCCATTCCTTGGATCATTTACATATCTTCATAACACATGATCAC CCGTATCCCAAAAGCCTTTGCGAATTTTATGGATTTATGCTAGCTGAATT TATAACAGCCCAAAACCTTATGGTTAACGTTGTCTCCATTAatgcatttg ttttgatttattttcgaACCAATATGGATTTTGGTAAATGTGATTACAAA TTGTTATTGTGGACCTTTGGACTTCCGTTTGTGGCGGCGATTGTAGCACT TTCCCTTGGCACCATGGGGCCGAATGGGACCT

Coding sequence (CDS) from alignment at sc0005222:2816..3697

>TCONS_00044237 ID=TCONS_00044237|Name=TCONS_00044237|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at sc0005222:2816..3697 (Clytia hemisphaerica)
ATGCTAATCGTAAATACAAGAGGAAATAACCAATCCATCAGTACACAGAT
GGCTATGACACCTACTAAGAAAGTATTGATTGACGGCTGGGATCTACCCG
TCTACGGGATCGAGCAAGGACAATTTGCTGCTATCCACATCCCAGCTTTA
ACGTGTATATTTCTAAGTTTGATTGCCGCTATTTGTGTATTGGTATTTTC
ATTTAAGACGAAAAGTTTTCGAACGTTTTTTATGTGGAATAAAAGCGAAC
GTTTTGTTGTTTATCTGGCAATATGTGATGGTCTGTTTAATATATGCCAT
TCCTTGGATCATTTACATATCTTCATAACACATGATCACCCGTATCCCAA
AAGCCTTTGCGAATTTTATGGATTTATGCTAGCTGAATTTATAACAGCCC
AAAACCTTATGGTTAACGTTGTCTCCATTAatgcatttgttttgatttat
tttcgaACCAATATGGATTTTGGTAAATGTGATTACAAATTGTTATTGTG
GACCTTTGGACTTCCGTTTGTGGCGGCGATTGTAGCACTTTCCCTTGGCA
CCATGGGGCCGAATGGGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027878XLOC_027878Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044237-proteinTCONS_00044237-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044237-exon-sc0005222-1491911889:2816..3697TCONS_00044237-exon-sc0005222-1491911889:2816..3697Clytia hemisphaericaexon
TCONS_00044237-exon-sc0005222-1510915933:2816..3697TCONS_00044237-exon-sc0005222-1510915933:2816..3697Clytia hemisphaericaexon
TCONS_00044237-exon-sc0005222-1575043694:2816..3697TCONS_00044237-exon-sc0005222-1575043694:2816..3697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005222supercontigsc0005222:2816..3697 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.936904 0.280882 0.406647 0.52796 0.133268 0.172657 0.199712 0 0.622402 0.92386 0.0979217 0.106292 0.0405768 0.135148 0.944138 0.134294 0.140246 0.0843238 0.0692072 0.356147 0.706462 1.16293 0.361819 0.485626 0.0666838 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023041Glucose_rcpt_Git3_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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