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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044098 ID=TCONS_00044098|Name=TCONS_00044098|organism=Clytia hemisphaerica|type=transcript|length=1873bp
GTTTTATCTTCTATTGTAAAAAATAAACTGTAAACCATCTAATATTTCTC
ATTTACATAAAATATTCCCCAAATTCTTTTATAAGGGACATGTATAATAA
AAGGGCTAAATATCAGCACTTGACATAATAAAACTAGGCATAAATCGTTA
ACACTTTCAAATTTATATTACAAGATACAAAATAATGATATATAATAACG
CGACCATAATAACAAATAACAATATATAATACATAATACATCTAATATAC
TCCATCACAAATTATAACTAACACAAAAAATAAACGCCAATATTTTCATA
GTATGACAATAATAGgctagatagatagatagaatcGATATTTAAAGTGG
atgatagcccagtaatctaagacttttagacagtctttcgattgttttca
caggGTCCACGGCCAGCTACCTACCCTAACGATGAAGTTAGCGGAACATT
GAAAGGAGCGGGGATTCTGAACCGCAAACGCCTGGTTTGAGGTGCTGACG
CCCGAGACCATCTCTTCAATACATTTTgtttgagaaaaattgaattgaca
TTTAGAAAAGCGGTTAAGTCTCTATCAGGAAAAATAGAatcgaaaaacga
aaaatatgaTACAAAGACTCACATGTATGGTATCGATAAAGATTACTTTT
TGGACAGACAAAAGCTTGCGATTTGCGGTACTCAGAAAAACCAGATCCAT
ACATATCTAGTACCTACAATAACATCATTTCCTCCTTATACGTAATATGG
TATACATCCATCTattatacaaaaataaaaaaatttaaaaatttaaggcT
CTACCACGcatcaaaaaccaacaaattcCTTTTAAACAATCTCTTTAGGG
TAAACTACCACAGTTCCTGTCCCTGACGGAGACTCTATAGTCTCAACACA
GCCGAATTTGTTTATACTGAGTGAATTCCCATGGTCTGTAGGCGATCCTC
TTGGTGATGATTCTCGATGGTTACCATTATGGTATTTAAAATGCTCTTCT
TCAAACTTCGTATTAATAGGACTTGGTACTTTCCAATTTTTACGATAGTT
AGATTCAACAACAGGTGTGTTTTCAATATTATTATCAATGCTTTCTTCAG
CTTTAATTTCATCTCTTATAGATGTGTTATCGTTAGTTTCCCCGTTGCTA
CTACTTTGAGGAGAGTTTACTGGATATTTCTGGATATTATCTCCATTAGA
TTGCACCTCTGTTTGTGTTGAGACACTAATCATGGGTGAATAACGCCTAT
ACATGTAACACGTTGGTTCTTCtgctttttgttgttgttgagggCGAGGT
GAGACATCACGTTGAGGTGCTTTTGGTAAGTAGTTCGTACTGAGAACGAT
AGCAGGTGTACGGTGTAGGTCTTTAGTTGACTCGTCACTATGGTGTGAAT
GTGGTCGAGATGGTGACCCACCTTCTTCATGGTCATAATGAGGCATTCTA
TTATTTTTATAACTTCTTTGATGTGAAGGAGAGTCCCTGTGATGGTCTTT
ATGTTTCGAAGATGCGTGACCAGGACTCACTTCGTACCGGTCGTACGGCC
CGGGCGAGCCATGACGTCTGAATAAACTTGCATCGCGACCGAAATGAAAA
CGATCAAGAACTTTCAATCGCTCTTCAGCAAATTTACGTGCATTTTCTTC
ATACAGTGACAAACGGTTGTCGGCTGTCGGACTTGCTTTCTTATGATGAA
AAACTGGATAGTCACTGGTACTACTACGTCGCTCGACTCTGTTAGGCCTA
TGATTTGGATGATGTGAGCGAGGGAAATTAGGATCAGAGTAGCGATAACG
ATGGTGTATTTCATCATCAAGTTCATGATCGGAATGTCGTCTTTTACGTT
CATGATACATTTCCGGTTCTCGT Run BLAST on NCBI transcript from alignment at sc0004968:3215..5147+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044098 ID=TCONS_00044098|Name=TCONS_00044098|organism=Clytia hemisphaerica|type=transcript|length=1933bp|location=Sequence derived from alignment at sc0004968:3215..5147+ (Clytia hemisphaerica)
GTTTTATCTTCTATTGTAAAAAATAAACTGTAAACCATCTAATATTTCTC
ATTTACATAAAATATTCCCCAAATTCTTTTATAAGGGACATGTATAATAA
AAGGGCTAAATATCAGCACTTGACATAATAAAACTAGGCATAAATCGTTA
ACACTTTCAAATTTATATTACAAGATACAAAATAATGATATATAATAACG
CGACCATAATAACAAATAACAATATATAATACATAATACATCTAATATAC
TCCATCACAAATTATAACTAACACAAAAAATAAACGCCAATATTTTCATA
GTATGACAATAATAGgctagatagatagatagaatcGATATTTAAAGTGG
atgatagcccagtaatctaagacttttagacagtctttcgattgttttca
caggGTCCACGGCCAGCTACCTACCCTAACGATGAAGTTAGCGGAACATT
GAAAGGAGCGGGGATTCTGAACCGCAAACGCCTGGTTTGAGGTGCTGACG
CCCGAGACCATCTCTTCAATACATTTTgtttgagaaaaattgaattgaca
TTTAGAAAAGCGGTTAAGTCTCTATCAGGAAAAATAGAatcgaaaaacga
aaaatatgaTACAAAGACTCACATGTATGGTATCGATAAAGATTACTTTT
TGGACAGACAAAAGCTTGCGATTTGCGGTACTCAGAAAAACCAGATCCAT
ACATATCTAGTACCTACAATAACATCATTTCCTCCTTATACGTAATATGG
TATACATCCATCTattatacaaaaataaaaaaatttaaaaatttaaggcT
CTACCACGcatcaaaaaccaacaaattcCTTTTAAACAATCTCTTTAGGG
TAAACTACCACAGTTCCTGTCCCTGACGGAGACTCTATAGTCTCAACACA
GCCGAATTTGTTTATACTGAGTGAATTCCCATGGTCTGTAGGCGATCCTC
TTGGTGATGATTCTCGATGGTTACCATTATGGTATTTAAAATGCTCTTCT
TCAAACTTCGTATTAATAGGACTTGGTACTTTCCAATTTTTACGATAGTT
AGATTCAACAACAGGTGTGTTTTCAATATTATTATCAATGCTTTCTTCAG
CTTTAATTTCATCTCTTATAGATGTGTTATCGTTAGTTTCCCCGTTGCTA
CTACTTTGAGGAGAGTTTACTGGATATTTCTGGATATTATCTCCATTAGA
TTGCACCTCTGTTTGTGTTGAGACACTAATCATGGGTGAATAACGCCTAT
ACATGTAACACGTTGGTTCTTCtgctttttgttgttgttgagggCGAGGT
GAGACATCACGTTGAGGTGCTTTTGGTAAGTAGTTCGTACTGAGAACGAT
AGCAGGTGTACGGTGTAGGTCTTTAGTTGACTCGTCACTATGGTGTGAAT
GTGGTCGAGATGGTGACCCACCTTCTTCATGGTCATAATGAGGCATTcta
ttattttcataaattcttTGACGTGNCCCACCTTCCTCATGGTCATAATG
AGGCATTCTATTATTTTTATAACTTCTTTGATGTGAAGGAGAGTCCCTGT
GATGGTCTTTATGTTTCGAAGATGCGTGACCAGGACTCACTTCGTACCGG
TCGTACGGCCCGGGCGAGCCATGACGTCTGAATAAACTTGCATCGCGACC
GAAATGAAAACGATCAAGAACTTTCAATCGCTCTTCAGCAAATTTACGTG
CATTTTCTTCATACAGTGACAAACGGTTGTCGGCTGTCGGACTTGCTTTC
TTATGATGAAAAACTGGATAGTCACTGGTACTACTACGTCGCTCGACTCT
GTTAGGCCTATGATTTGGATGATGTGAGCGAGGGAAATTAGGATCAGAGT
AGCGATAACGATGGTGTATTTCATCATCAAGTTCATGATCGGAATGTCGT
CTTTTACGTTCATGATACATTTCCGGTTCTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044098-exon-sc0004968-1491911889:3215..4656 | TCONS_00044098-exon-sc0004968-1491911889:3215..4656 | Clytia hemisphaerica | exon |
| TCONS_00044098-exon-sc0004968-1510915933:3215..4656 | TCONS_00044098-exon-sc0004968-1510915933:3215..4656 | Clytia hemisphaerica | exon |
| TCONS_00044098-exon-sc0004968-1575043694:3215..4656 | TCONS_00044098-exon-sc0004968-1575043694:3215..4656 | Clytia hemisphaerica | exon |
| TCONS_00044098-exon-sc0004968-1491911889:4717..5147 | TCONS_00044098-exon-sc0004968-1491911889:4717..5147 | Clytia hemisphaerica | exon |
| TCONS_00044098-exon-sc0004968-1510915933:4717..5147 | TCONS_00044098-exon-sc0004968-1510915933:4717..5147 | Clytia hemisphaerica | exon |
| TCONS_00044098-exon-sc0004968-1575043694:4717..5147 | TCONS_00044098-exon-sc0004968-1575043694:4717..5147 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004968 | supercontig | sc0004968:3215..5147 + |
Blast
The following BLAST results are available for this feature:
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