TCONS_00044094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044094
Unique NameTCONS_00044094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044094 ID=TCONS_00044094|Name=TCONS_00044094|organism=Clytia hemisphaerica|type=transcript|length=596bp
TGAGAATATTATCCATCTTCAATAATGTAAGATTGTGGGAACAAAATTGT
TCCATACTGTTAAATGTGTGTTTTGTGGGACACGTATCAACTGTTTGGGG
CTTAATGCCAATAAATCAGAAGTTGTTTGTTCTCTCCAAACATGCCAAGG
AACATCGGCTCTCTCAAGTTTAGGCCAGCAGAAATACTGGAACGTTGTAG
TCATCCCAAAGGAAACTACAGTCAAGTTGGATATTCAATTAAAACATCTG
CCGGAGATGGAGGACGACCAGATAAAAATATATACCTCATCAATAATACG
TTTGATAACTCGTATAGCGCTGTATCGGGTATAGTCACAACCTTTGCCGT
TAATGAAATGACCCAAAAAGAAGACTCCAACCAGAATCAAGCTTCGGTTA
CAGAAAACTCCACGCACGAAGAAAGTGAGCAAGACATGTAGTTGTATCAT
GTAGGTGATTTTTGTGTTGTCTTTGGACATTTTTAAGattatattttatt
tgtttatttttttacattgttgaaaagtgaaattttttaaagatgaCATT
CATGATTTTAAGACAGTAAGTTAGAGTTTTTACTCAGAGGATGAAC
Run BLAST on NCBI

protein sequence of TCONS_00044094-protein

>TCONS_00044094-protein ID=TCONS_00044094-protein|Name=TCONS_00044094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MPRNIGSLKFRPAEILERCSHPKGNYSQVGYSIKTSAGDGGRPDKNIYLI
NNTFDNSYSAVSGIVTTFAVNEMTQKEDSNQNQASVTENSTHEESEQDM
Run BLAST on NCBI

transcript from alignment at sc0004960:3956..4551

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044094 ID=TCONS_00044094|Name=TCONS_00044094|organism=Clytia hemisphaerica|type=transcript|length=596bp|location=Sequence derived from alignment at sc0004960:3956..4551 (Clytia hemisphaerica)
GTTCATCCTCTGAGTAAAAACTCTAACTTACTGTCTTAAAATCATGAATG
tcatctttaaaaaatttcacttttcaacaatgtaaaaaaataaacaaata
aaatataatCTTAAAAATGTCCAAAGACAACACAAAAATCACCTACATGA
TACAACTACATGTCTTGCTCACTTTCTTCGTGCGTGGAGTTTTCTGTAAC
CGAAGCTTGATTCTGGTTGGAGTCTTCTTTTTGGGTCATTTCATTAACGG
CAAAGGTTGTGACTATACCCGATACAGCGCTATACGAGTTATCAAACGTA
TTATTGATGAGGTATATATTTTTATCTGGTCGTCCTCCATCTCCGGCAGA
TGTTTTAATTGAATATCCAACTTGACTGTAGTTTCCTTTGGGATGACTAC
AACGTTCCAGTATTTCTGCTGGCCTAAACTTGAGAGAGCCGATGTTCCTT
GGCATGTTTGGAGAGAACAAACAACTTCTGATTTATTGGCATTAAGCCCC
AAACAGTTGATACGTGTCCCACAAAACACACATTTAACAGTATGGAACAA
TTTTGTTCCCACAATCTTACATTATTGAAGATGGATAATATTCTCA

Coding sequence (CDS) from alignment at sc0004960:3956..4551

>TCONS_00044094 ID=TCONS_00044094|Name=TCONS_00044094|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0004960:3956..4551 (Clytia hemisphaerica)
CTACATGTCTTGCTCACTTTCTTCGTGCGTGGAGTTTTCTGTAACCGAAG
CTTGATTCTGGTTGGAGTCTTCTTTTTGGGTCATTTCATTAACGGCAAAG
GTTGTGACTATACCCGATACAGCGCTATACGAGTTATCAAACGTATTATT
GATGAGGTATATATTTTTATCTGGTCGTCCTCCATCTCCGGCAGATGTTT
TAATTGAATATCCAACTTGACTGTAGTTTCCTTTGGGATGACTACAACGT
TCCAGTATTTCTGCTGGCCTAAACTTGAGAGAGCCGATGTTCCTTGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027743XLOC_027743Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044094-proteinTCONS_00044094-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044094-exon-sc0004960-1491911889:3956..4551TCONS_00044094-exon-sc0004960-1491911889:3956..4551Clytia hemisphaericaexon
TCONS_00044094-exon-sc0004960-1510915933:3956..4551TCONS_00044094-exon-sc0004960-1510915933:3956..4551Clytia hemisphaericaexon
TCONS_00044094-exon-sc0004960-1575043694:3956..4551TCONS_00044094-exon-sc0004960-1575043694:3956..4551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004960supercontigsc0004960:3956..4551 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.836303	0.702129	0.449966	0.2031	0.467504	0.813862	1.8118	1.21677	0	0	0.694091	0.437332	0.372988	0.410144	0.377894	0.878539	1.02537	0.623321	0.667485	0.988971	1.43849	1.43627	0.919985	1.54873	0.098426	0.0878429	1.78672	0.909014	2.81456	1.45636
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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