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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044089 ID=TCONS_00044089|Name=TCONS_00044089|organism=Clytia hemisphaerica|type=transcript|length=1717bp
CGACTTTGGAGGGTATAATACAAAGCAGATGAGAGAAAATGGAGTATCAA
AAAAGAACATGACAGCAGTGAATTACAAACCATTAATCAACAAGACACCA
TCAGATCCATCCACGATTCTAACAGCCATGTGTGATGTCGAAAGTGTTTC
CAACAAAGCAGGTCAGAAGGAAACTGTGCTCACCTGTGATCAGCAGCTGT
ATAGGGTCACAATGGACATCANAACAAGATACCATCAGATCCATCCACGA
TTCTAACAGCCATGTGTGATGTCGAAAGTGTTTCCAACAAAGCAGGTCAG
AAGGAAACTGTGCTCACCTGTGATCAGCAGCTGTATAGGGTCACAATGGA
CATCATCTGGAATGACCCGGCAAGATGGGCAAATTTCTACCCAAGAATTG
GTGGGATGCACTGGCTCATGAGCTTCGTTGGGTCGGTTGGAAAACTCATG
AAGAATAGTGGACTTGACAAGCTACTGAAATCAGGTTTTGCAGGCGTTGA
AAAGATGTTGACCGGCAAAAAATATCCCATGAATGTACGAGCACTCCGGA
TTGTTGCTTTTGAGCTCCTAAAGCATTTAGTCGACGAAAGTACTACCCGA
GAAGACCTAGTCAAGTCCTTAGATGATCTATCAAAAAACAACAAGCTGGC
ACAACATTGGATAACGAATCTCATTGATCCAGTGTTCCTCATGATGAAAT
ACCTACGTGCAGAGAGAGAAGGAGAATTTGGATTGCATTTGTACTGCTGT
CAAAAGATGATCCCGTACTTCTTTGCTGCTGGCCATCTGAACTATGCGCG
TGATGGAATCGTCTACCTCAGATCAATGCACAGGATGCCAAGCGATCTAC
TGAAACAGTTTATGAAGGGAGAGCATATCGTAAGACTCAAAGACGGAAGA
TTCAATGGTATATGGAGTGATATGGCAATCGAATCAACCTACATGAAAGT
AGGAAAAGgACCAACTGGGATGATTGGTGTCACCACAAGTGAAAGGACAG
TGGCAATCTGGGCAAATAGTCATCATATCTGTGGAGAGCTCTTGACAGAG
CTTGGTGAGCAAAGGGATAAAAGGCAACCAGACAATAACAAACACAAGGA
AGAAGGAAATGGAAGAATCAAATCAGATAACAACGATCGTATGAAAATCA
GAAAAGCTCTAGAGAAATGCATCCACCCACTTCAAATTCACACCCATGCC
TCTAATACACTCGTCAACATCTACAGTGGAGAAGAATCTGACTCTTCTGT
AAATGTCAATTAGGCTCGCGAGACTGGTGAGAAGTAGATGATCACCTTCG
AAAATGATCTTCCGGATTCGTTTAGAGCCACTATCAGCTCAAAGGTGATA
CTCATGCAATCTGTGAACGACAAACGgtcaaagaaaaagaatgaaaaaaa
tggaTACAACACAGACGTCATTTTCTCCCGTGTTCTTTATCTTCTTGGAA
CAAATCAAATGGAATTCGAAGACATCTTCAATTACGAGCTCGCTTCTATT
CCAACTGCACTATTCAAGGAATCTGGAGAGCCCAGGTACCCAAATTGCAA
ATCGGTCTTAATGAAAAATCTTAGGTGCCAGGAGAGTTCTCGTGGAATCA
AACCTGAGGCAGTAGTTGTTGATGGAGGAGGAATGCTGCACAACATTTAT
TGGCCCTCGACTGGTACTGTAAAGGATTTGGTTGACAATGTCGAGCATTA
TCTCCAAAAAGCATCAC Run BLAST on NCBI protein sequence of TCONS_00044089-protein >TCONS_00044089-protein ID=TCONS_00044089-protein|Name=TCONS_00044089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MCDVESVSNKAGQKETVLTCDQQLYRVTMDIIWNDPARWANFYPRIGGMH
WLMSFVGSVGKLMKNSGLDKLLKSGFAGVEKMLTGKKYPMNVRALRIVAF
ELLKHLVDESTTREDLVKSLDDLSKNNKLAQHWITNLIDPVFLMMKYLRA
EREGEFGLHLYCCQKMIPYFFAAGHLNYARDGIVYLRSMHRMPSDLLKQF
MKGEHIVRLKDGRFNGIWSDMAIESTYMKVGKGPTGMIGVTTSERTVAIW
ANSHHICGELLTELGEQRDKRQPDNNKHKEEGNGRIKSDNNDRMKIRKAL
EKCIHPLQIHTHASNTLVNIYSGEESDSSVNVN Run BLAST on NCBI transcript from alignment at sc0004952:3248..5145- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044089 ID=TCONS_00044089|Name=TCONS_00044089|organism=Clytia hemisphaerica|type=transcript|length=1898bp|location=Sequence derived from alignment at sc0004952:3248..5145- (Clytia hemisphaerica)
CGACTTTGGAGGGTATAATACAAAGCAGATGAGAGAAAATGGAGTATCAA
AAAAGAACATGACAGCAGTGAATTACAAACCATTAATCAACAAGACACCA
TCAGATCCATCCACGATTCTAACAGCCATGTGTGATGTCGAAAGTGTTTC
CAACAAAGCAGGTCAGAAGGAAACTGTGCTCACCTGTGATCAGCAGCTGT
ATAGGGTCACAATGGACATCANAACAAGATACCATCAGATCCATCCACGA
TTCTAACAGCCATGTGTGATGTCGAAAGTGTTTCCAACAAAGCAGGTCAG
AAGGAAACTGTGCTCACCTGTGATCAGCAGCTGTATAGGGTCACAATGGA
CATCATCTGGAATGACCCGGCAAGATGGGCAAATTTCTACCCAAGAATTG
GTGGGATGCACTGGCTCATGAGCTTCGTTGGGTCGGTTGGAAAACTCATG
AAGAATAGTGGACTTGACAAGCTACTGAAATCAGGTTTTGCAGGCGTTGA
AAAGATGTTGACCGGCAAAAAATATCCCATGAATGTACGAGCACTCCGGA
TTGTTGCTTTTGAGCTCCTAAAGCATTTAGTCGACGAAAGTACTACCCGA
GAAGACCTAGTCAAGTCCTTAGATGATCTATCAAAAAACAACAAGCTGGC
ACAACATTGGATAACGAATCTCATTGATCCAGTGTTCCTCATGATGAAAT
ACCTACGTGCAGAGAGAGAAGGAGAATTTGGATTGCATTTGTACTGCTGT
CAAAAGATGATCCCGTACTTCTTTGCTGCTGGCCATCTGAACTATGCGCG
TGATGGAATCGTCTACCTCAGATCAATGCACAGGATGCCAAGCGATCTAC
TGAAACAGTTTATGAAGGGAGAGCATATCGTAAGACTCAAAGACGGAAGA
TTCAATGGTATATGGAGTGATATGGCAATCGAATCAACCTACATGAAAGT
AGGAAAAGGTAAATACATTTTTATCTCAAACATCATAAACTACACGAATC
TGATCTGGTACTGTTTAGTTAGTATCTCAAATTCTTGTTATCATATTTTC
AAATGTTGCTGATTCAGGCTAGGCTGGTCAAACTACTTATCCTTGATAAA
TTTAACATTTGTAAATTTTACCTTCTTTATTTTCATCAGGACCAACTGGG
ATGATTGGTGTCACCACAAGTGAAAGGACAGTGGCAATCTGGGCAAATAG
TCATCATATCTGTGGAGAGCTCTTGACAGAGCTTGGTGAGCAAAGGGATA
AAAGGCAACCAGACAATAACAAACACAAGGAAGAAGGAAATGGAAGAATC
AAATCAGATAACAACGATCGTATGAAAATCAGAAAAGCTCTAGAGAAATG
CATCCACCCACTTCAAATTCACACCCATGCCTCTAATACACTCGTCAACA
TCTACAGTGGAGAAGAATCTGACTCTTCTGTAAATGTCAATTAGGCTCGC
GAGACTGGTGAGAAGTAGATGATCACCTTCGAAAATGATCTTCCGGATTC
GTTTAGAGCCACTATCAGCTCAAAGGTGATACTCATGCAATCTGTGAACG
ACAAACGGTCAAAGAAAAAGAATGAAAAAAATGGATACAACACAGACGTC
ATTTTCTCCCGTGTTCTTTATCTTCTTGGAACAAATCAAATGGAATTCGA
AGACATCTTCAATTACGAGCTCGCTTCTATTCCAACTGCACTATTCAAGG
AATCTGGAGAGCCCAGGTACCCAAATTGCAAATCGGTCTTAATGAAAAAT
CTTAGGTGCCAGGAGAGTTCTCGTGGAATCAAACCTGAGGCAGTAGTTGT
TGATGGAGGAGGAATGCTGCACAACATTTATTGGCCCTCGACTGGTACTG
TAAAGGATTTGGTTGACAATGTCGAGCATTATCTCCAAAAAGCATCAC Coding sequence (CDS) from alignment at sc0004952:3248..5145- >TCONS_00044089 ID=TCONS_00044089|Name=TCONS_00044089|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at sc0004952:3248..5145- (Clytia hemisphaerica)
GACCAACTGGGATGATTGGTGTCACCACAAGTGAAAGGACAGTGGCAATC
TGGGCAAATAGTCATCATATCTGTGGAGAGCTCTTGACAGAGCTTGGTGA
GCAAAGGGATAAAAGGCAACCAGACAATAACAAACACAAGGAAGAAGGAA
ATGGAAGAATCAAATCAGATAACAACGATCGTATGAAAATCAGAAAAGCT
CTAGAGAAATGCATCCACCCACTTCAAATTCACACCCATGCCTCTAATAC
ACTCGTCAACATCTACAGTGGAGAAGAATCTGACTCTTCTGTAAATGTCA
ATTAGATGTGTGATGTCGAAAGTGTTTCCAACAAAGCAGGTCAGAAGGAA
ACTGTGCTCACCTGTGATCAGCAGCTGTATAGGGTCACAATGGACATCAT
CTGGAATGACCCGGCAAGATGGGCAAATTTCTACCCAAGAATTGGTGGGA
TGCACTGGCTCATGAGCTTCGTTGGGTCGGTTGGAAAACTCATGAAGAAT
AGTGGACTTGACAAGCTACTGAAATCAGGTTTTGCAGGCGTTGAAAAGAT
GTTGACCGGCAAAAAATATCCCATGAATGTACGAGCACTCCGGATTGTTG
CTTTTGAGCTCCTAAAGCATTTAGTCGACGAAAGTACTACCCGAGAAGAC
CTAGTCAAGTCCTTAGATGATCTATCAAAAAACAACAAGCTGGCACAACA
TTGGATAACGAATCTCATTGATCCAGTGTTCCTCATGATGAAATACCTAC
GTGCAGAGAGAGAAGGAGAATTTGGATTGCATTTGTACTGCTGTCAAAAG
ATGATCCCGTACTTCTTTGCTGCTGGCCATCTGAACTATGCGCGTGATGG
AATCGTCTACCTCAGATCAATGCACAGGATGCCAAGCGATCTACTGAAAC
AGTTTATGAAGGGAGAGCATATCGTAAGACTCAAAGACGGAAGATTCAAT
GGTATATGGAGTGATATGGCAATCGAATCAACCTACATGAAAGTAGGAAA
AGGACCAACTGGGATGATTGGTGTCACCACAAGTGAAAGGACAGTGGCAA
TCTGGGCAAATAGTCATCATATCTGTGGAGAGCTCTTGACAGAGCTTGGT
GAGCAAAGGGATAAAAGGCAACCAGACAATAACAAACACAAGGAAGAAGG
AAATGGAAGAATCAAATCAGATAACAACGATCGTATGAAAATCAGAAAAG
CTCTAGAGAAATGCATCCACCCACTTCAAATTCACACCCATGCCTCTAAT
ACACTCGTCAACATCTACAGTGGAGAAGAATCTGACTCTTCTGTAAATGT
CAATTAGATGTGTGATGTCGAAAGTGTTTCCAACAAAGCAGGTCAGAAGG
AAACTGTGCTCACCTGTGATCAGCAGCTGTATAGGGTCACAATGGACATC
ATCTGGAATGACCCGGCAAGATGGGCAAATTTCTACCCAAGAATTGGTGG
GATGCACTGGCTCATGAGCTTCGTTGGGTCGGTTGGAAAACTCATGAAGA
ATAGTGGACTTGACAAGCTACTGAAATCAGGTTTTGCAGGCGTTGAAAAG
ATGTTGACCGGCAAAAAATATCCCATGAATGTACGAGCACTCCGGATTGT
TGCTTTTGAGCTCCTAAAGCATTTAGTCGACGAAAGTACTACCCGAGAAG
ACCTAGTCAAGTCCTTAGATGATCTATCAAAAAACAACAAGCTGGCACAA
CATTGGATAACGAATCTCATTGATCCAGTGTTCCTCATGATGAAATACCT
ACGTGCAGAGAGAGAAGGAGAATTTGGATTGCATTTGTACTGCTGTCAAA
AGATGATCCCGTACTTCTTTGCTGCTGGCCATCTGAACTATGCGCGTGAT
GGAATCGTCTACCTCAGATCAATGCACAGGATGCCAAGCGATCTACTGAA
ACAGTTTATGAAGGGAGAGCATATCGTAAGACTCAAAGACGGAAGATTCA
ATGGTATATGGAGTGATATGGCAATCGAATCAACCTACATGAAAGTAGGA
AAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044089-exon-sc0004952-1575043694:4188..5145 | TCONS_00044089-exon-sc0004952-1575043694:4188..5145 | Clytia hemisphaerica | exon |
| TCONS_00044089-exon-sc0004952-1575043694:3248..4006 | TCONS_00044089-exon-sc0004952-1575043694:3248..4006 | Clytia hemisphaerica | exon |
| TCONS_00044089-exon-sc0004952-1510915933:4188..5145 | TCONS_00044089-exon-sc0004952-1510915933:4188..5145 | Clytia hemisphaerica | exon |
| TCONS_00044089-exon-sc0004952-1510915933:3248..4006 | TCONS_00044089-exon-sc0004952-1510915933:3248..4006 | Clytia hemisphaerica | exon |
| TCONS_00044089-exon-sc0004952-1491911889:4188..5145 | TCONS_00044089-exon-sc0004952-1491911889:4188..5145 | Clytia hemisphaerica | exon |
| TCONS_00044089-exon-sc0004952-1491911889:3248..4006 | TCONS_00044089-exon-sc0004952-1491911889:3248..4006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004952 | supercontig | sc0004952:3248..5145 - |
Blast
The following BLAST results are available for this feature:
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