TCONS_00044090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044090
Unique NameTCONS_00044090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044090 ID=TCONS_00044090|Name=TCONS_00044090|organism=Clytia hemisphaerica|type=transcript|length=1617bp
GGATTCCTTTTACCGTGCCTGTTAGAATCTATTTTACCGGGCACACTGGA
CAAGTCATAACATTAAAACGATTGAGTTACAAATGTTCTGTCTATTAATT
ATTCCAGAATGTATTTTTATTTCCTTTCCTATACAGGTTTACAAAGGTGT
CCGCATCAAACGTCACGATTTGACTTCGTACTACGATGAAGCCGACTACA
TAATACCCCAACAAGTTGACTGCATCAATAACGAAGAGAAAAAGGTGATC
AAAGTTTTGAGTGCAGACACAGATGTTTTCGTTCTTCTATGTGGTCATTT
CTTTGAGAGAAAGTGGTCTTCAAAGATCTACATGGATCCATtcacaaaag
aaaacaaaattattaacATCAACAATTCGGTTAAACGTAGCGGAAATCTT
ACCCAACATCTAATTGCACTCCACGCTCTCTCTGGTTGTGATACAGTCCC
AATGCTGTTCAATATTGGAAAATCAAAAGCAATCAACGCCGCTAAGAATG
TCCCTCTTTTGCATATTGGTGACATCAACTCTCCAATAAAATTGGTAGTC
AAAGAAGGAAAGCAGTTTGTTGCAAAGTGTTATGGCCAAACTCACGAATC
TTCATCTACAAATAGACGTAACATCTGGGTGAGCAAGACTGATGGTTCGA
ATTAGTCAACCAAACCACCCGCACTCAAATATTTGCCACCAACCGACGAA
GCTCTCGAATTGAACATCATGAGAGGGCATTTTGTTGCAATCATGGGGAA
AAATTGTGTCAGTGGCATTCCCCCAGACCTGGATCCTTGTGACTATGGCT
ATGAAAAACGTGAAGATGGAGTGTCGTTGACGCCGACCATGCTTCCAGAC
GGTGTCGATGTTGCTCCAGAAGAGATTCTGCAGATGACCCGCTGCAAATG
TGCATCTTCAAAATGTATTAACAAGAAATGCCCCTGTAAAAAAGCTGAAG
TCGACTGCACTGAATTTTGTAGTTGTAAAGAATGCGAGAACCATAAAGAG
CCTGATTTTAAAATGTTAaacaatgatgaaaatgacgaAGAGCATTTGGA
TAGTAGTGATAACGATGAAGATGACGAGAATGACAATTAATTTTTGTGCT
GTATCATTTACCAGTCAATACTTACTTGAGATTCTGATAGCTCATTGCAT
TATCACATTtggaatttcttcatttttaacacttttttccagtattttcg
aaatatttcaaaatttatatataCGGAAACTTCTAGGATCATTATCATCG
CAATCTacataaaaatatctttcaaacgaGTATAAACTTGACTATGTTTG
gaccattttttgttttgttttcacgattttttgacattttttatgtCATT
CCTTAAAAACCatgtaaaaaattttccccaagaCTTTGGGAGGGCAAGTT
TGGCTTTCCGTAGGGAATTTCCCTTCTGTCCACTATTTCTCTCAGtttga
accacaagtgattttgtgGTTTAGAGATGCTGGCTAAATCGATCTAGCCt
gccagggtgcagtatgcagtgctgacgagtcccaataaggacgaaatgca
tatgctgctctgccacccaaatctcctgagtgaatatagttggacagaaa
ttcttatttcttcacat
Run BLAST on NCBI

protein sequence of TCONS_00044090-protein

>TCONS_00044090-protein ID=TCONS_00044090-protein|Name=TCONS_00044090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MFCLLIIPECIFISFPIQVYKGVRIKRHDLTSYYDEADYIIPQQVDCINN
EEKKVIKVLSADTDVFVLLCGHFFERKWSSKIYMDPFTKENKIININNSV
KRSGNLTQHLIALHALSGCDTVPMLFNIGKSKAINAAKNVPLLHIGDINS
PIKLVVKEGKQFVAKCYGQTHESSSTNRRNIWVSKTDGSN
Run BLAST on NCBI

transcript from alignment at sc0004952:1276..2892

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044090 ID=TCONS_00044090|Name=TCONS_00044090|organism=Clytia hemisphaerica|type=transcript|length=1617bp|location=Sequence derived from alignment at sc0004952:1276..2892 (Clytia hemisphaerica)
atgtgaagaaataagaatttctgtccaactatattcactcaggagatttg ggtggcagagcagcatatgcatttcgtccttattgggactcgtcagcact gcatactgcaccctggcaGGCTAGATCGATTTAGCCAGCATCTCTAAACc acaaaatcacttgtggttcaaaCTGAGAGAAATAGTGGACAGAAGGGAAA TTCCCTACGGAAAGCCAAACTTGCCCTCCCAAAGtcttggggaaaatttt ttacatGGTTTTTAAGGAATGacataaaaaatgtcaaaaaatcgtgaaaa caaaacaaaaaatggtcCAAACATAGTCAAGTTTATACtcgtttgaaaga tatttttatgtAGATTGCGATGATAATGATCCTAGAAGTTTCCGtatata taaattttgaaatatttcgaaaatactggaaaaaagtgttaaaaatgaag aaattccaAATGTGATAATGCAATGAGCTATCAGAATCTCAAGTAAGTAT TGACTGGTAAATGATACAGCACAAAAATTAATTGTCATTCTCGTCATCTT CATCGTTATCACTACTATCCAAATGCTCTtcgtcattttcatcattgttT AACATTTTAAAATCAGGCTCTTTATGGTTCTCGCATTCTTTACAACTACA AAATTCAGTGCAGTCGACTTCAGCTTTTTTACAGGGGCATTTCTTGTTAA TACATTTTGAAGATGCACATTTGCAGCGGGTCATCTGCAGAATCTCTTCT GGAGCAACATCGACACCGTCTGGAAGCATGGTCGGCGTCAACGACACTCC ATCTTCACGTTTTTCATAGCCATAGTCACAAGGATCCAGGTCTGGGGGAA TGCCACTGACACAATTTTTCCCCATGATTGCAACAAAATGCCCTCTCATG ATGTTCAATTCGAGAGCTTCGTCGGTTGGTGGCAAATATTTGAGTGCGGG TGGTTTGGTTGACTAATTCGAACCATCAGTCTTGCTCACCCAGATGTTAC GTCTATTTGTAGATGAAGATTCGTGAGTTTGGCCATAACACTTTGCAACA AACTGCTTTCCTTCTTTGACTACCAATTTTATTGGAGAGTTGATGTCACC AATATGCAAAAGAGGGACATTCTTAGCGGCGTTGATTGCTTTTGATTTTC CAATATTGAACAGCATTGGGACTGTATCACAACCAGAGAGAGCGTGGAGT GCAATTAGATGTTGGGTAAGATTTCCGCTACGTTTAACCGAATTGTTGAT gttaataattttgttttcttttgtgaATGGATCCATGTAGATCTTTGAAG ACCACTTTCTCTCAAAGAAATGACCACATAGAAGAACGAAAACATCTGTG TCTGCACTCAAAACTTTGATCACCTTTTTCTCTTCGTTATTGATGCAGTC AACTTGTTGGGGTATTATGTAGTCGGCTTCATCGTAGTACGAAGTCAAAT CGTGACGTTTGATGCGGACACCTTTGTAAACCTGTATAGGAAAGGAAATA AAAATACATTCTGGAATAATTAATAGACAGAACATTTGTAACTCAATCGT TTTAATGTTATGACTTGTCCAGTGTGCCCGGTAAAATAGATTCTAACAGG CACGGTAAAAGGAATCC

Coding sequence (CDS) from alignment at sc0004952:1276..2892

>TCONS_00044090 ID=TCONS_00044090|Name=TCONS_00044090|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0004952:1276..2892 (Clytia hemisphaerica)
CTAATTCGAACCATCAGTCTTGCTCACCCAGATGTTACGTCTATTTGTAG
ATGAAGATTCGTGAGTTTGGCCATAACACTTTGCAACAAACTGCTTTCCT
TCTTTGACTACCAATTTTATTGGAGAGTTGATGTCACCAATATGCAAAAG
AGGGACATTCTTAGCGGCGTTGATTGCTTTTGATTTTCCAATATTGAACA
GCATTGGGACTGTATCACAACCAGAGAGAGCGTGGAGTGCAATTAGATGT
TGGGTAAGATTTCCGCTACGTTTAACCGAATTGTTGATgttaataatttt
gttttcttttgtgaATGGATCCATGTAGATCTTTGAAGACCACTTTCTCT
CAAAGAAATGACCACATAGAAGAACGAAAACATCTGTGTCTGCACTCAAA
ACTTTGATCACCTTTTTCTCTTCGTTATTGATGCAGTCAACTTGTTGGGG
TATTATGTAGTCGGCTTCATCGTAGTACGAAGTCAAATCGTGACGTTTGA
TGCGGACACCTTTGTAAACCTGTATAGGAAAGGAAATAAAAATACATTCT
GGAATAATTAATAGACAGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027739XLOC_027739Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044090-proteinTCONS_00044090-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044090-exon-sc0004952-1491911889:1276..2892TCONS_00044090-exon-sc0004952-1491911889:1276..2892Clytia hemisphaericaexon
TCONS_00044090-exon-sc0004952-1510915933:1276..2892TCONS_00044090-exon-sc0004952-1510915933:1276..2892Clytia hemisphaericaexon
TCONS_00044090-exon-sc0004952-1575043694:1276..2892TCONS_00044090-exon-sc0004952-1575043694:1276..2892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004952supercontigsc0004952:1276..2892 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.341491 0.341836 0.628571 1.191 0.77071 0.676285 0.593315 0.670598 0.302577 0.724126 0.853604 0.963953 0.707225 0.485181 0.438252 0.671086 0.659918 0.320476 0.153443 0.524358 0.321329 0.658633 0.245273 0.532089 0.854152 0.635885 0.36487 0.719313 0.431613 0.276282
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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