TCONS_00044079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044079
Unique NameTCONS_00044079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044079 ID=TCONS_00044079|Name=TCONS_00044079|organism=Clytia hemisphaerica|type=transcript|length=2139bp
caatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatca
atcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaat
cctCGCGTTAAAAAAGTATGAAATTCGAAGTTAATCAAATTATTTGAGTT
AGAAAGTTGAAGCAAATTTCAATGGTTTCAAGACACTAAATTGCCAAAAA
GGTTGAATAGGCGAGGAAACTCAGTAAAAGAAGGCGGGTATAAGAAAATG
CCCCAAATATGAAATCTCTACAGTACAAATTTATACTACACAATAAAAGT
AATACACaaacatgaaaacaaaacaaagaaagcaaTAATGTAAAAATAGC
ATAAATTGTTATTCACAAAATGTTGtataaaaaacagaaaaatagtCCAA
ATAACACGTGATAAGTTATTTACTAATTATGACAAGTgctaaaacaaaaa
ctttaaaaatattcggcaatacaaaaacaacagaaaattttggtaacaaa
aaaaaaaattttaatacaAAAAGCGAGAGATATTACGATATATACTTCCT
TTCTCATAAATGCTTTCAATGTGACTCTTTGCATTAAATTTTATAACAAA
TCCTTTGCTCGCTCGCTGAAATAATTTTGAAGAATCGAATTGGAGAGAGT
CGAATATATCCAAAATCTTGTTAAGTTTTAGGTTTTAGAAAAGAAACAGA
AAAAGATAAAACAGAAAATTCCAGAATACCAACTAaataccaaaattaaa
aaataaaataaaaacaataaaattactACAGAATTTTAAGAGGttataga
aaaataatttacagaaaaataaacgtaaaataatttctgaaaaaaatact
gATACTTTTCTCCAGTAAAACTTTATAATACATTACACAATTAGGGTTAA
AAGGGCTAAAACTCACCAGAATTCATTAAAGGATTGGAGACGAAACCAAA
AGCAACATAGTGTAAATCTAGTTTaaagtttgttgtttttaacTCACACG
AGAATTCTCCTTTGACAAATTTTATTCGGATGCAAATAGATTGAGAATAA
TATGCCATTTGTAGGGCAGAGTCACAGATAAATTATATAAAATACCAGAT
GTAGCTTCTCCGTCCCTAACTGAAGCAAAATGATGCGCCATCTTTAGTTT
AATAACGTCACAATTTTTGCTTGCGCGAGCTATGAAATTTTTGAAGTAGC
GGTAGTATCAAAAGTGAAAACAAGGTCAACTTTCATAACAAATAAcgctt
tattttgcttcacctgccaTGACCTGGGAAAGGTAAGACCACCTGTAGTA
TTTTATATATGATATCTGTGGGTGGGatataaaaatgattaaaagttGTG
GAAAGCTGATTGGTGATATAAAACataaaaggtgtaaaaaatattcataa
aaaaaggTTGCATGGTGTGTTGATGATTTGAAGGATGTGGTCATTGAAGG
GGAATGCATAAATTAGGCTTTTCTTACCAAAAGGCAATCCTACTGGATGT
CGGTCACCAAAAGACAATGCTACTGGATGTTGGTCACCAAAAGGCAATCC
TACTGGATGTTGGTGGCCAAAAGACAATACTACTGGATGTTGGTCACCAA
AAGGCAATCCTACTGGATGTTGGTCACCAAAAGACAATACTACTGGATGT
TGGTCACCAAAAGACAATACTACTGGATGTTGGTCACCAAAAGACAATAC
TACTGGATGCTGGTCACCAAAAGACAATACTACTGGATGTTGGTCACCAA
AAGACAATCCTACTGGATGTTGGTCACCAAAAGAGTGGATGTTGCCGTGA
TTCATAGTACTGTATCGACATCCTCAAGGAGGATAAGTATTTCATTAAAA
CACTAACTTAATCCATATAAAAACCAGTGAATCTCAGGGCTTCATTTGGT
AACATCTGtctattttctttcattgagatGATTCCATCTAAATTACGTGT
AGACTGGGACTTGCGCCAGGTTTAGATATGTGTGAGGTGTAGAGAGGGCT
TAAGACCCGGTCATGCCAGTATACGGGCCTTCCAGGCGCAAATACTGTAA
CGAAACGAAATGAAAAGATGTCAAACAAGAGCTAACTATATTCAGGTATC
TCTTCAacgtcttctgacattacatcacggacccaacag
Run BLAST on NCBI

protein sequence of TCONS_00044079-protein

>TCONS_00044079-protein ID=TCONS_00044079-protein|Name=TCONS_00044079-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MNHGNIHSFGDQHPVGLSFGDQHPVVLSFGDQHPVVLSFGDQHPVVLSFG
DQHPVVLSFGDQHPVGLPFGDQHPVVLSFGHQHPVGLPFGDQHPVALSFG
DRHPVGLPFGKKSLIYAFPFNDHILQIINTPCNLFL
Run BLAST on NCBI

transcript from alignment at sc0004934:663..2801-

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044079 ID=TCONS_00044079|Name=TCONS_00044079|organism=Clytia hemisphaerica|type=transcript|length=2139bp|location=Sequence derived from alignment at sc0004934:663..2801- (Clytia hemisphaerica)
CAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCA
ATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAAT
CCTCGCGTTAAAAAAGTATGAAATTCGAAGTTAATCAAATTATTTGAGTT
AGAAAGTTGAAGCAAATTTCAATGGTTTCAAGACACTAAATTGCCAAAAA
GGTTGAATAGGCGAGGAAACTCAGTAAAAGAAGGCGGGTATAAGAAAATG
CCCCAAATATGAAATCTCTACAGTACAAATTTATACTACACAATAAAAGT
AATACACAAACATGAAAACAAAACAAAGAAAGCAATAATGTAAAAATAGC
ATAAATTGTTATTCACAAAATGTTGTATAAAAAACAGAAAAATAGTCCAA
ATAACACGTGATAAGTTATTTACTAATTATGACAAGTGCTAAAACAAAAA
CTTTAAAAATATTCGGCAATACAAAAACAACAGAAAATTTTGGTAACAAA
AAAAAAAATTTTAATACAAAAAGCGAGAGATATTACGATATATACTTCCT
TTCTCATAAATGCTTTCAATGTGACTCTTTGCATTAAATTTTATAACAAA
TCCTTTGCTCGCTCGCTGAAATAATTTTGAAGAATCGAATTGGAGAGAGT
CGAATATATCCAAAATCTTGTTAAGTTTTAGGTTTTAGAAAAGAAACAGA
AAAAGATAAAACAGAAAATTCCAGAATACCAACTAAATACCAAAATTAAA
AAATAAAATAAAAACAATAAAATTACTACAGAATTTTAAGAGGTTATAGA
AAAATAATTTACAGAAAAATAAACGTAAAATAATTTCTGAAAAAAATACT
GATACTTTTCTCCAGTAAAACTTTATAATACATTACACAATTAGGGTTAA
AAGGGCTAAAACTCACCAGAATTCATTAAAGGATTGGAGACGAAACCAAA
AGCAACATAGTGTAAATCTAGTTTAAAGTTTGTTGTTTTTAACTCACACG
AGAATTCTCCTTTGACAAATTTTATTCGGATGCAAATAGATTGAGAATAA
TATGCCATTTGTAGGGCAGAGTCACAGATAAATTATATAAAATACCAGAT
GTAGCTTCTCCGTCCCTAACTGAAGCAAAATGATGCGCCATCTTTAGTTT
AATAACGTCACAATTTTTGCTTGCGCGAGCTATGAAATTTTTGAAGTAGC
GGTAGTATCAAAAGTGAAAACAAGGTCAACTTTCATAACAAATAACGCTT
TATTTTGCTTCACCTGCCATGACCTGGGAAAGGTAAGACCACCTGTAGTA
TTTTATATATGATATCTGTGGGTGGGATATAAAAATGATTAAAAGTTGTG
GAAAGCTGATTGGTGATATAAAACATAAAAGGTGTAAAAAATATTCATAA
AAAAAGGTTGCATGGTGTGTTGATGATTTGAAGGATGTGGTCATTGAAGG
GGAATGCATAAATTAGGCTTTTCTTACCAAAAGGCAATCCTACTGGATGT
CGGTCACCAAAAGACAATGCTACTGGATGTTGGTCACCAAAAGGCAATCC
TACTGGATGTTGGTGGCCAAAAGACAATACTACTGGATGTTGGTCACCAA
AAGGCAATCCTACTGGATGTTGGTCACCAAAAGACAATACTACTGGATGT
TGGTCACCAAAAGACAATACTACTGGATGTTGGTCACCAAAAGACAATAC
TACTGGATGCTGGTCACCAAAAGACAATACTACTGGATGTTGGTCACCAA
AAGACAATCCTACTGGATGTTGGTCACCAAAAGAGTGGATGTTGCCGTGA
TTCATAGTACTGTATCGACATCCTCAAGGAGGATAAGTATTTCATTAAAA
CACTAACTTAATCCATATAAAAACCAGTGAATCTCAGGGCTTCATTTGGT
AACATCTGTCTATTTTCTTTCATTGAGATGATTCCATCTAAATTACGTGT
AGACTGGGACTTGCGCCAGGTTTAGATATGTGTGAGGTGTAGAGAGGGCT
TAAGACCCGGTCATGCCAGTATACGGGCCTTCCAGGCGCAAATACTGTAA
CGAAACGAAATGAAAAGATGTCAAACAAGAGCTAACTATATTCAGGTATC
TCTTCAACGTCTTCTGACATTACATCACGGACCCAACAG

Coding sequence (CDS) from alignment at sc0004934:663..2801-

>TCONS_00044079 ID=TCONS_00044079|Name=TCONS_00044079|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0004934:663..2801- (Clytia hemisphaerica)
TCATAAAAAAAGGTTGCATGGTGTGTTGATGATTTGAAGGATGTGGTCAT
TGAAGGGGAATGCATAAATTAGGCTTTTCTTACCAAAAGGCAATCCTACT
GGATGTCGGTCACCAAAAGACAATGCTACTGGATGTTGGTCACCAAAAGG
CAATCCTACTGGATGTTGGTGGCCAAAAGACAATACTACTGGATGTTGGT
CACCAAAAGGCAATCCTACTGGATGTTGGTCACCAAAAGACAATACTACT
GGATGTTGGTCACCAAAAGACAATACTACTGGATGTTGGTCACCAAAAGA
CAATACTACTGGATGCTGGTCACCAAAAGACAATACTACTGGATGTTGGT
CACCAAAAGACAATCCTACTGGATGTTGGTCACCAAAAGAGTGGATGTTG
CCGTGATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027731XLOC_027731Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044079-proteinTCONS_00044079-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044079-exon-sc0004934-1575043694:663..2801TCONS_00044079-exon-sc0004934-1575043694:663..2801Clytia hemisphaericaexon
TCONS_00044079-exon-sc0004934-1510915933:663..2801TCONS_00044079-exon-sc0004934-1510915933:663..2801Clytia hemisphaericaexon
TCONS_00044079-exon-sc0004934-1491911889:663..2801TCONS_00044079-exon-sc0004934-1491911889:663..2801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004934supercontigsc0004934:663..2801 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.543747	0.63302	0.592404	0.255598	13.1721	11.5011	10.2717	10.7979	8.40041	9.20891	6.24904	7.50289	5.76373	5.44894	4.24819	4.51182	5.00171	6.0224	5.43532	7.16141	5.76967	5.55859	3.33395	3.5362	6.1957	6.59549	6.19441	5.89689	3.56512	2.93397
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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