TCONS_00044005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044005
Unique NameTCONS_00044005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044005 ID=TCONS_00044005|Name=TCONS_00044005|organism=Clytia hemisphaerica|type=transcript|length=484bp
GTACAATCGATGACTTCAAGTTCAGGGACGAACTTCTGTTGATAGTACCT
TAGCAACGTAAGGTGTACAATTGATGACTTCAAGTTCAGGAACGAACTTC
TGTTGATAGTACCTTAGCAACGCAAGGTGTACCATTGATGACTTCAAGTT
CAGGAACGAACTTCTGTTGATAATACCTTAGCAACGTAAGGTGTACAATT
GATGACTTCAAGTTCAGGGACGAACTTCTGTTGATAGTACCTTAGCAACG
TAAGGTGTACAATTGATGACTTCAAGTTCAGGGACGAACTTCTGTTGATA
GTACCTTAGCAACGTAAGGTGTACAATCGATGACTTCAAGTTCAGGAACG
AACTTCTGTTGATAATACCTTAGCAACGTAAGGTGTACAATTGATGACTT
CAAGTTCAGGGACGAACTTCTGTTGATAGTACCTTAGCAACGTAAGGTGT
ACAATCGATGACTTCAAGTTCAGGAACGAACTTC
Run BLAST on NCBI

transcript from alignment at sc0004838:668..1151

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044005 ID=TCONS_00044005|Name=TCONS_00044005|organism=Clytia hemisphaerica|type=transcript|length=484bp|location=Sequence derived from alignment at sc0004838:668..1151 (Clytia hemisphaerica)
GAAGTTCGTTCCTGAACTTGAAGTCATCGATTGTACACCTTACGTTGCTA
AGGTACTATCAACAGAAGTTCGTCCCTGAACTTGAAGTCATCAATTGTAC
ACCTTACGTTGCTAAGGTATTATCAACAGAAGTTCGTTCCTGAACTTGAA
GTCATCGATTGTACACCTTACGTTGCTAAGGTACTATCAACAGAAGTTCG
TCCCTGAACTTGAAGTCATCAATTGTACACCTTACGTTGCTAAGGTACTA
TCAACAGAAGTTCGTCCCTGAACTTGAAGTCATCAATTGTACACCTTACG
TTGCTAAGGTATTATCAACAGAAGTTCGTTCCTGAACTTGAAGTCATCAA
TGGTACACCTTGCGTTGCTAAGGTACTATCAACAGAAGTTCGTTCCTGAA
CTTGAAGTCATCAATTGTACACCTTACGTTGCTAAGGTACTATCAACAGA
AGTTCGTCCCTGAACTTGAAGTCATCGATTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027662XLOC_027662Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044005-exon-sc0004838-1491911889:668..1151TCONS_00044005-exon-sc0004838-1491911889:668..1151Clytia hemisphaericaexon
TCONS_00044005-exon-sc0004838-1510915933:668..1151TCONS_00044005-exon-sc0004838-1510915933:668..1151Clytia hemisphaericaexon
TCONS_00044005-exon-sc0004838-1575043694:668..1151TCONS_00044005-exon-sc0004838-1575043694:668..1151Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004838supercontigsc0004838:668..1151 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46918	1.2458	0.514965	0	8.13424	4.66261	1.30847	3.84736	0.613671	0.990304	0.392113	0.976376	0.444645	0.58175	0.238826	0.333547	0.360913	0	0.376998	0	0	0	0	0	0	0.333604	0	0.245126	0.485631	0.169685
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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