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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043975 ID=TCONS_00043975|Name=TCONS_00043975|organism=Clytia hemisphaerica|type=transcript|length=360bp
TGATGATAGAAAAAGAGATTACGTGAGGTGTACGCTATATGTGCCTTTTT
TGATCTCAATAAAAGTCAGTTGTTTTCAAGCTGCCCAGGAGAAAGacctg
GCCCTTTAAACAACAACGAAGATGTTACCGAAAACGTTATTCGCATTCCT
ACTCATTTTGAGCATAACCAATGCTTCACCATTACAAGAAGAACTACGAA
AAGCCAAAGAGGCTGACAAAGCAGCTATGGTTGTCCTCCTCAAGGGTAGC
TGAGGGTTCTGTCAACGTCAAGCGGCAAAACTATATTCATGGTACAGCCT
CTTGGCCAGGTATGGATAATTAATTTTTACACCccttctacaatcatggt
cgtaatattt Run BLAST on NCBI transcript from alignment at sc0004800:1557..3219- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043975 ID=TCONS_00043975|Name=TCONS_00043975|organism=Clytia hemisphaerica|type=transcript|length=1663bp|location=Sequence derived from alignment at sc0004800:1557..3219- (Clytia hemisphaerica)
TGATGATAGAAAAAGAGATTACGTGAGGTGTACGCTATATGTGCCTTTTT
TGATCTCAATAAAAGTCAGTTGTTTTCAAGCTGCCCAGGAGAAAGGTAAG
AAGGTCTTTTTTCTTATATCATCTTTTTTTCTAGTGGAAACTATAATATT
TTTGTATAGAGAAGGCACACCCAGCTGACACACAATGTTGTTTCAACGTT
CATCTAACGTAATATGGACGTTTTGAACGTTAGACAAACGTTAAAACCAC
GTTGTGTGCCAGCTGGGGGAAGTATTGATCATGTGTGAAAACGGACTTAA
AGAAAACTTACCAACTTCTCCAATTGTTATGAATAGACGTACGGACGGAA
CGCCAGGTTCGGTTGATTCCCTGTGAGAAAAATAATCAAAATACGTATTA
TTGGTCTAGAGAAGTTATTTCAGTGGATACCACTGGACGGAAGAATCTAA
CCTCTTCAACGTGAGGGGTAGATTCTATTGATTAAAAAACGGGACACAAT
TCCCATAATAAGATTAGCTTAGATTTTAGTCTGAATCACAGACCTCTACA
AAACCATATGTAGTTAGTAGATGCTACAATCAGTGTCATGATATATTGGC
ACTTTTGGCTAATTTACAATTTTTCGAAAATTGAAGTTCGAGCGAGAATG
TCAATTTTTAGGCCTTCAACTTGATTTCATCGAGTATTTCGATCTGGGAG
GGATTTATTGGTTTCTAGGCTATATTTCAAGCCCTACTGGACCATTTTTG
AACTTTTGGATCCTCGCATCCTAAGGTCCTAACCTAAGTCTAGCGTTAAA
ACTCAGAGTTAAAACTCTACCCTTCGAACCTACTTTAGAGCACTTACAAA
TCGATTGTGGTTTCAAAACACCCCGGTGAATTTCCCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAACTCAGAGTTAAAACTCTACCCTTCGAACC
TACTTTAGAGCACTTACAAATCGATTGTGGTTTCAAAACACCCCGGTGAA
TTTCCCTTTTGTGCCAAGAATTTTTTCCCTGATTGTAGTAACCTACACGT
TTTTTTACAAGAACATCCAAATTTTTTGTCTTCCGATGTTCTTAATTTTT
ACTCTGAGTTTTTACTCTGAAAATGCTCATAACCATTTTCTTATTTTCAC
CCTTTTTTGAGGATTTTTGTCCATTTTCCTAAGAAACCAGGTGTTTTAGA
GTCCTCGTTAGAATCAGCAAAGGCTTAAAATGTTCTTAGGATTTTGGCCA
CCAAAGCCTTTAGTTCTTATAAACAAACGTGTACAATTTAAAGTTGGTTG
GTTTCGTTAGGGAATTCGCCGCAGCTGATGTATTTTCTGAGGTACAACAA
ACTAAATAGATCGATTCAAATCTTGATTTAGATCTTTATTTTTTTCAGAC
CTGGCCCTTTAAACAACAACGAAGATGTTACCGAAAACGTTATTCGCATT
CCTACTCATTTTGAGCATAACCAATGCTTCACCATTACAAGAAGAACTAC
GAAAAGCCAAAGAGGCTGACAAAGCAGCTATGGTTGTCCTCCTCAAGGGT
AGCTGAGGGTTCTGTCAACGTCAAGCGGCAAAACTATATTCATGGTACAG
CCTCTTGGCCAGGTATGGATAATTAATTTTTACACCCCTTCTACAATCAT
GGTCGTAATATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043975-exon-sc0004800-1575043694:3125..3219 | TCONS_00043975-exon-sc0004800-1575043694:3125..3219 | Clytia hemisphaerica | exon |
| TCONS_00043975-exon-sc0004800-1575043694:1557..1821 | TCONS_00043975-exon-sc0004800-1575043694:1557..1821 | Clytia hemisphaerica | exon |
| TCONS_00043975-exon-sc0004800-1510915933:3125..3219 | TCONS_00043975-exon-sc0004800-1510915933:3125..3219 | Clytia hemisphaerica | exon |
| TCONS_00043975-exon-sc0004800-1510915933:1557..1821 | TCONS_00043975-exon-sc0004800-1510915933:1557..1821 | Clytia hemisphaerica | exon |
| TCONS_00043975-exon-sc0004800-1491911889:3125..3219 | TCONS_00043975-exon-sc0004800-1491911889:3125..3219 | Clytia hemisphaerica | exon |
| TCONS_00043975-exon-sc0004800-1491911889:1557..1821 | TCONS_00043975-exon-sc0004800-1491911889:1557..1821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004800 | supercontig | sc0004800:1557..3219 - |
Blast
The following BLAST results are available for this feature:
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