TCONS_00043650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043650
Unique NameTCONS_00043650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043650 ID=TCONS_00043650|Name=TCONS_00043650|organism=Clytia hemisphaerica|type=transcript|length=472bp
gttcaagttaagAGAATTTCGAGATACAGACTAAGGCTTACAAGGCATTT
TCAACTGAAGAGACTaacaaacttgttcgagttatagagattcgTTAAAG
AGCTTCCGCTGTATAGCGGCCATTTTTCTAGtacgaaaacaaaaaaatct
tgttATTGCTGTATGAACATGCTGGAAATGATTGTCTTAAGAACCGCAAT
TTTGTAATTTCAACGATAGGGTATCATTGAAATCGTTGCAAAAGTATCAA
CATCAACTCAACAAAGTAAGATATTCATCTTTTATGATATAGAAAAAAGG
TGTGCCACTTATGCTGAACTTTGATCGTAATTGGCTATTCCATAAAAGTC
TCTACCCCTTGTGTTGAAAAGGTATGACGTACAGGGTGGTgttagaaaca
aaaaaaaaatccagaggGTTTGGTTTTtcatccagggtggtcagtaaaat
taaGTTGAAAGtcctgaggggg
Run BLAST on NCBI

transcript from alignment at sc0004432:6104..6575

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043650 ID=TCONS_00043650|Name=TCONS_00043650|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at sc0004432:6104..6575 (Clytia hemisphaerica)
ccccctcaggaCTTTCAACttaattttactgaccaccctggatgaAAAAC
CAAACcctctggattttttttttgtttctaacACCACCCTGTACGTCATA
CCTTTTCAACACAAGGGGTAGAGACTTTTATGGAATAGCCAATTACGATC
AAAGTTCAGCATAAGTGGCACACCTTTTTTCTATATCATAAAAGATGAAT
ATCTTACTTTGTTGAGTTGATGTTGATACTTTTGCAACGATTTCAATGAT
ACCCTATCGTTGAAATTACAAAATTGCGGTTCTTAAGACAATCATTTCCA
GCATGTTCATACAGCAATaacaagatttttttgttttcgtaCTAGAAAAA
TGGCCGCTATACAGCGGAAGCTCTTTAAcgaatctctataactcgaacaa
gtttgttAGTCTCTTCAGTTGAAAATGCCTTGTAAGCCTTAGTCTGTATC
TCGAAATTCTcttaacttgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027334XLOC_027334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043650-exon-sc0004432-1491911889:6104..6575TCONS_00043650-exon-sc0004432-1491911889:6104..6575Clytia hemisphaericaexon
TCONS_00043650-exon-sc0004432-1510915933:6104..6575TCONS_00043650-exon-sc0004432-1510915933:6104..6575Clytia hemisphaericaexon
TCONS_00043650-exon-sc0004432-1575043694:6104..6575TCONS_00043650-exon-sc0004432-1575043694:6104..6575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004432supercontigsc0004432:6104..6575 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.809378	1.31545	0.45821	0.747144	0.727661	0.287504	0.173431	0.811818	0.454698	0.704022	1.77669	0.898402	0.448577	0.0931703	0.229796	0.246606	0.101266	0.311384	0.286796	0	0.912978	1.14511	0.15467	0.421851	0	0.646297	1.10982	0.987023	0	0.457637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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