TCONS_00043648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043648
Unique NameTCONS_00043648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043648 ID=TCONS_00043648|Name=TCONS_00043648|organism=Clytia hemisphaerica|type=transcript|length=233bp
NAATTTGGTATATTATCATGAATACTAAAGTAACATGTTATATGCACTGG
AAATCCAAATCTGTATAGGAGGAGACccatttaagtaactttttatttgt
gaatgATATATTATGGTGgtataaaatattgatgacaaggaaATTTTTCA
TATGAGGACACTGTCATTTAAATGGTACAAATCATGCACCATgccaaaaa
tggcttaaaataaGGTTTTTGTAATAACTTGCC
Run BLAST on NCBI

transcript from alignment at sc0004431:5310..5542

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043648 ID=TCONS_00043648|Name=TCONS_00043648|organism=Clytia hemisphaerica|type=transcript|length=233bp|location=Sequence derived from alignment at sc0004431:5310..5542 (Clytia hemisphaerica)
GGCAAGTTATTACAAAAACCttattttaagccatttttggcATGGTGCAT
GATTTGTACCATTTAAATGACAGTGTCCTCATATGAAAAATttccttgtc
atcaatattttatacCACCATAATATATcattcacaaataaaaagttact
taaatggGTCTCCTCCTATACAGATTTGGATTTCCAGTGCATATAACATG
TTACTTTAGTATTCATGATAATATACCAAATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027332XLOC_027332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043648-exon-sc0004431-1491911889:5310..5542TCONS_00043648-exon-sc0004431-1491911889:5310..5542Clytia hemisphaericaexon
TCONS_00043648-exon-sc0004431-1510915933:5310..5542TCONS_00043648-exon-sc0004431-1510915933:5310..5542Clytia hemisphaericaexon
TCONS_00043648-exon-sc0004431-1575043694:5310..5542TCONS_00043648-exon-sc0004431-1575043694:5310..5542Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004431supercontigsc0004431:5310..5542 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00667	1.14549	9.11843	6.69072	2.7151	6.43653	0	3.63494	3.65268	2.3176	1.01989	4.67938	4.01703	11.1246	0.747359	0.687185	3.02281	2.32371	2.14022	2.49063	3.89322	1.6076	1.27454	0	1.08082	2.89381	1.45663	1.47314	3.79274	2.42192
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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