TCONS_00043647 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043647
Unique NameTCONS_00043647
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043647 ID=TCONS_00043647|Name=TCONS_00043647|organism=Clytia hemisphaerica|type=transcript|length=485bp
caaaaaactaagaatgttCTCTTTTAGATCAGTCATAATCAAAGATCAAA
TGCAGGGTattttttaaaggtttaaaatggggaaaactagCAAATTGTCA
CCAAGAAATCACATACTTGGCCTGTAAACTGTTCTTTGGGGTTCATTCAA
AGATTGTTTtcttcatttgatttgaaatgttgttttcaaacttatttatt
ttatttgctttgatCTACACTTTGCTTCAACCTTTGACCCTCTTTACTCA
TAGTAAGTATATCATGAAGAAtaatttatttgttaaaaaatattttctgg
agAAAAATCCCATTTTCATCACTTTCAGAATGCCTCATGGTGACCTCATT
TGCAGAATGGATACATTAAATACATGTCTTTATTTTGAGAGTACCTCATG
CTTTCACACTAAGTTCATAAGAAAAGCACAAGGTTAGCATGGTTACATCT
TTTATATCCTCACCTTGAGAATATTAAGACAGTAT
Run BLAST on NCBI

transcript from alignment at sc0004431:3541..4025

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043647 ID=TCONS_00043647|Name=TCONS_00043647|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0004431:3541..4025 (Clytia hemisphaerica)
ATACTGTCTTAATATTCTCAAGGTGAGGATATAAAAGATGTAACCATGCT
AACCTTGTGCTTTTCTTATGAACTTAGTGTGAAAGCATGAGGTACTCTCA
AAATAAAGACATGTATTTAATGTATCCATTCTGCAAATGAGGTCACCATG
AGGCATTCTGAAAGTGATGAAAATGGGATTTTTctccagaaaatattttt
taacaaataaattaTTCTTCATGATATACTTACTATGAGTAAAGAGGGTC
AAAGGTTGAAGCAAAGTGTAGatcaaagcaaataaaataaataagtttga
aaacaacatttcaaatcaaatgaagaAAACAATCTTTGAATGAACCCCAA
AGAACAGTTTACAGGCCAAGTATGTGATTTCTTGGTGACAATTTGctagt
tttccccattttaaacctttaaaaaatACCCTGCATTTGATCTTTGATTA
TGACTGATCTAAAAGAGaacattcttagttttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027331XLOC_027331Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043647-exon-sc0004431-1491911889:3541..4025TCONS_00043647-exon-sc0004431-1491911889:3541..4025Clytia hemisphaericaexon
TCONS_00043647-exon-sc0004431-1510915933:3541..4025TCONS_00043647-exon-sc0004431-1510915933:3541..4025Clytia hemisphaericaexon
TCONS_00043647-exon-sc0004431-1575043694:3541..4025TCONS_00043647-exon-sc0004431-1575043694:3541..4025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004431supercontigsc0004431:3541..4025 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.974017	0	0	0	0.182841	0.710582	0.517858	0.618864	0.147911	0.268344	0.410242	0.549598	0.533262	0.110754	0.676212	1.13183	0.614929	0.761167	0.823554	0.385311	2.13735	0.877046	0	0.43211	1.07516	0.174203	0.717369	1.03114	0.783527	0.296373
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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