TCONS_00043615 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043615
Unique NameTCONS_00043615
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043615 ID=TCONS_00043615|Name=TCONS_00043615|organism=Clytia hemisphaerica|type=transcript|length=449bp
CCACCTTTTCTGAAAGGTGCATTCTTCAAATGATCACCCACTGATCTTCT
TATTGATTTGTCATCGGCGTCCTTAAATACGGCCTTGACTGCGgctaaag
gaaaattttaaggaATATATTATTTACATTCGGAAACATTCAGAACATAT
GCAATTTTGAGTTATGCAGAgtctaaaaaatcataacatatacaggacta
ttatgaaaatttcaagctaaaatgtCTCGAAGTGTAACATAAAATGTCTG
ATCCCAAAAATGTATTTATACCCCAGAACGCAGGTTTACCAAAAAGCTAC
TGCTGGATGCTTTTAAAGTGCACTAAATTGCTTTAGAGGAATTCTAAGAA
TAGTATGTAGGAATTGAGGTTTAACCTTAAAAAATtatataggctgaaat
ttgggGCCTCAAGAGTCACTAGAAAAAAAAGTACATTAATTAGATAAAG
Run BLAST on NCBI

transcript from alignment at sc0004394:3273..3721

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043615 ID=TCONS_00043615|Name=TCONS_00043615|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0004394:3273..3721 (Clytia hemisphaerica)
CTTTATCTAATTAATGTACTTTTTTTTCTAGTGACTCTTGAGGCcccaaa
tttcagcctatataATTTTTTAAGGTTAAACCTCAATTCCTACATACTAT
TCTTAGAATTCCTCTAAAGCAATTTAGTGCACTTTAAAAGCATCCAGCAG
TAGCTTTTTGGTAAACCTGCGTTCTGGGGTATAAATACATTTTTGGGATC
AGACATTTTATGTTACACTTCGAGacattttagcttgaaattttcataat
agtcctgtatatgttatgattttttagacTCTGCATAACTCAAAATTGCA
TATGTTCTGAATGTTTCCGAATGTAAATAATATATtccttaaaattttcc
tttagcCGCAGTCAAGGCCGTATTTAAGGACGCCGATGACAAATCAATAA
GAAGATCAGTGGGTGATCATTTGAAGAATGCACCTTTCAGAAAAGGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027301XLOC_027301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043615-exon-sc0004394-1491911889:3273..3721TCONS_00043615-exon-sc0004394-1491911889:3273..3721Clytia hemisphaericaexon
TCONS_00043615-exon-sc0004394-1510915933:3273..3721TCONS_00043615-exon-sc0004394-1510915933:3273..3721Clytia hemisphaericaexon
TCONS_00043615-exon-sc0004394-1575043694:3273..3721TCONS_00043615-exon-sc0004394-1575043694:3273..3721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004394supercontigsc0004394:3273..3721 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.167374	0.491247	0.398698	0	0	0.177923	0.249137	0	0	0	0.0983131	0.102099	0.167879	0.0900797	0	0.227483	0	0	1.1434	0.627422	0	0	0	0.283293	0.810784	0.216323	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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