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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043614 ID=TCONS_00043614|Name=TCONS_00043614|organism=Clytia hemisphaerica|type=transcript|length=502bp
ACATCACAGGGGTCAAGCCTCAAAAGGCTGAAAATGATACACGATGATAG
TGACGATGAATTTAATGGCGGTGAATATAATGACGGTAATCATGATAACG
ATGGTGGAAACGATGATCCTATACCAAAGTCACCAAATTCACTTGCTGAC
AACAATGCAATGTCGCCAACTTTTGACCTTACTGTTACCCGCCGTCTCAG
TGATCGACTTGACTCACTGGAAAAAACAATCACGGACGTAAACAAACGGC
AGGGGAAATTGATGTCCATGATGGTCAAAATCCATAACATGTTGAAGTTC
AGGGACGACAGATCAAACAATCAGGACGAGATCCCCAAAATAGAATCTCA
AGAAGATTTCGAATCAGTGGAGAGTGCCCTTTGTGNAGAAGAAGACAGTT
CAACAATCCCCCAAaatGCAAACATCACAGGGGTCAAGCCTCAAAAGGCT
GAAAATGATACACGATGATAGTGACGATGAATTTAATGGCGGTGAATATA
AN Run BLAST on NCBI protein sequence of TCONS_00043614-protein >TCONS_00043614-protein ID=TCONS_00043614-protein|Name=TCONS_00043614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
TSQGSSLKRLKMIHDDSDDEFNGGEYNDGNHDNDGGNDDPIPKSPNSLAD
NNAMSPTFDLTVTRRLSDRLDSLEKTITDVNKRQGKLMSMMVKIHNMLKF
RDDRSNNQDEIPKIESQEDFESVESALCXEEDSSTIPQNANITGVKPQKA
ENDTR Run BLAST on NCBI transcript from alignment at sc0004394:19..1071+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043614 ID=TCONS_00043614|Name=TCONS_00043614|organism=Clytia hemisphaerica|type=transcript|length=1053bp|location=Sequence derived from alignment at sc0004394:19..1071+ (Clytia hemisphaerica)
ACATCACAGGGGTCAAGCCTCAAAAGGCTGAAAATGATACACGATGATAG
TGACGATGAATTTAATGGCGGTGAATATAATGACGGTAATCATGATAACG
ATGGTGGAAACGATGATCCTATACCAAAGTCACCAAATTCACTTGCTGAC
AACAATGCAATGTCGCCAACTTTTGACCTTACTGTTACCCGCCGTCTCAG
TGATCGACTTGACTCACTGGAAAGTAAGTTCTTagggttttttctttttt
gtgttATGTGTTTTGTTCTAATTATCACCGCAAATAGCGAGGAGTGACCG
TTCTAGTCTCGTGTGttgaaatatatataatatatattatataaattATA
TATCAGACTTTactttttagttatttttttgttacttATGCGGTCAATCT
ACAAGTCATGCCTAAGGATTATCTCAAGAAGTTCTATAAATTGACGTATA
TGTAAATAGACTTCTAATGCTTTTACTTGTTCATTGTCTTAGAAACAATC
ACGGACGTAAACAAACGGCAGGGGAAATTGATGTCCATGATGGTCAAAAT
CCATAACATGTTGAAGTTCAGGGACGACAGATCAAACAATCAGGACGAGA
TCCCCAAAATAGAATCTCAAGAAGATTTCGAATCAGTGGAGAGTGCCCTT
TGTGNAGAAGAAGACAGTTCAACAATCCCCCAAGtaagtttttgtatttt
cagaTCATTATTTCAGCTACTCTGAGGGTGGAGGGTGgtggttaattttt
ttttaaatatttctgaATGTGGTTAATTGCGGAAAGATTAGAAGGGGGTC
AACCTCGTCTTTCTCTTTTAAAGTGTAAAGAGAGTCGTACTATTTTTTAA
GATTGGATTCGCCCATTTTATTTGATGACACTTAGATATGCACTGATTGC
AATTATCCTTACTATACGATGATCATTTCATATAATAAACGCTtttgtta
tttcaaaaaaaacagaatGCAAACATCACAGGGGTCAAGCCTCAAAAGGC
TGAAAATGATACACGATGATAGTGACGATGAATTTAATGGCGGTGAATAT
AAN Coding sequence (CDS) from alignment at sc0004394:19..1071+ >TCONS_00043614 ID=TCONS_00043614|Name=TCONS_00043614|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0004394:19..1071+ (Clytia hemisphaerica)
ACATCACAGGGGTCAAGCCTCAAAAGGCTGAAAATGATACACGATGATAG
TGACGATGAATTTAATGGCGGTGAATATAATGACGGTAATCATGATAACG
ATGGTGGAAACGATGATCCTATACCAAAGTCACCAAATTCACTTGCTGAC
AACAATGCAATGTCGCCAACTTTTGACCTTACTGTTACCCGCCGTCTCAG
TGATCGACTTGACTCACTGGAAAAAACAATCACGGACGTAAACAAACGGC
AGGGGAAATTGATGTCCATGATGGTCAAAATCCATAACATGTTGAAGTTC
AGGGACGACAGATCAAACAATCAGGACGAGATCCCCAAAATAGAATCTCA
AGAAGATTTCGAATCAGTGGAGAGTGCCCTTTGTGNAGAAGAAGACAGTT
CAACAATCCCCCAAaatGCAAACATCACAGGGGTCAAGCCTCAAAAGGCT
GAAAATGATACACGATGAACATCACAGGGGTCAAGCCTCAAAAGGCTGAA
AATGATACACGATGATAGTGACGATGAATTTAATGGCGGTGAATATAATG
ACGGTAATCATGATAACGATGGTGGAAACGATGATCCTATACCAAAGTCA
CCAAATTCACTTGCTGACAACAATGCAATGTCGCCAACTTTTGACCTTAC
TGTTACCCGCCGTCTCAGTGATCGACTTGACTCACTGGAAAAAACAATCA
CGGACGTAAACAAACGGCAGGGGAAATTGATGTCCATGATGGTCAAAATC
CATAACATGTTGAAGTTCAGGGACGACAGATCAAACAATCAGGACGAGAT
CCCCAAAATAGAATCTCAAGAAGATTTCGAATCAGTGGAGAGTGCCCTTT
GTGNAGAAGAAGACAGTTCAACAATCCCCCAAaatGCAAACATCACAGGG
GTCAAGCCTCAAAAGGCTGAAAATGATACACGATGAACATCACAGGGGTC
AAGCCTCAAAAGGCTGAAAATGATACACGATGATAGTGACGATGAATTTA
ATGGCGGTGAATATAATGACGGTAATCATGATAACGATGGTGGAAACGAT
GATCCTATACCAAAGTCACCAAATTCACTTGCTGACAACAATGCAATGTC
GCCAACTTTTGACCTTACTGTTACCCGCCGTCTCAGTGATCGACTTGACT
CACTGGAAAAAACAATCACGGACGTAAACAAACGGCAGGGGAAATTGATG
TCCATGATGGTCAAAATCCATAACATGTTGAAGTTCAGGGACGACAGATC
AAACAATCAGGACGAGATCCCCAAAATAGAATCTCAAGAAGATTTCGAAT
CAGTGGAGAGTGCCCTTTGTGNAGAAGAAGACAGTTCAACAATCCCCCAA
aatGCAAACATCACAGGGGTCAAGCCTCAAAAGGCTGAAAATGATACACG
ATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043614-exon-sc0004394-1491911889:19..241 | TCONS_00043614-exon-sc0004394-1491911889:19..241 | Clytia hemisphaerica | exon |
| TCONS_00043614-exon-sc0004394-1510915933:19..241 | TCONS_00043614-exon-sc0004394-1510915933:19..241 | Clytia hemisphaerica | exon |
| TCONS_00043614-exon-sc0004394-1575043694:19..241 | TCONS_00043614-exon-sc0004394-1575043694:19..241 | Clytia hemisphaerica | exon |
| TCONS_00043614-exon-sc0004394-1491911889:511..701 | TCONS_00043614-exon-sc0004394-1491911889:511..701 | Clytia hemisphaerica | exon |
| TCONS_00043614-exon-sc0004394-1510915933:511..701 | TCONS_00043614-exon-sc0004394-1510915933:511..701 | Clytia hemisphaerica | exon |
| TCONS_00043614-exon-sc0004394-1575043694:511..701 | TCONS_00043614-exon-sc0004394-1575043694:511..701 | Clytia hemisphaerica | exon |
| TCONS_00043614-exon-sc0004394-1491911889:984..1071 | TCONS_00043614-exon-sc0004394-1491911889:984..1071 | Clytia hemisphaerica | exon |
| TCONS_00043614-exon-sc0004394-1510915933:984..1071 | TCONS_00043614-exon-sc0004394-1510915933:984..1071 | Clytia hemisphaerica | exon |
| TCONS_00043614-exon-sc0004394-1575043694:984..1071 | TCONS_00043614-exon-sc0004394-1575043694:984..1071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004394 | supercontig | sc0004394:19..1071 + |
Blast
The following BLAST results are available for this feature:
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