TCONS_00043466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043466
Unique NameTCONS_00043466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043466 ID=TCONS_00043466|Name=TCONS_00043466|organism=Clytia hemisphaerica|type=transcript|length=594bp
TTGGACTTGATGAGGTAGCTGGAGGAGATGCTGCATCAGTCATGAAGTAT
TTTACAGAGGCTATTGAAGACCTTGCTGAAGTAATCTCAAATGGGGAAGG
GGATAAATCTAAAACATTTTCAGACATGATCATCAAAATTCGAAGCACCA
TGTCTGACCTGGGTCCTGTGAATCCACTATTTAATGAAAAACTAAGAAAA
CTAAGACAGGACCTTTTACCAACTGCTATAAAAAACTGGAATGAAATGAG
TCCTTCACAGCAAAAGGAAATGTCAGAAATGGCTAATTACTTTTGCAAGT
TACATCTTCTAGCTAATTTTGCTTCTGAAACTGATAaggttttaaattct
tttgaaaagctTATAttatcaaatgattttgataCAGTGTTTGCTTTCAA
CACAAAAGAATCTGGTGCTGCACGCCTTGTGCGGACTGCGTGTAAGGCTT
TTCATGCAAGGGGGAGTGATGAAGCAGGTGTTGCCTCTTATTTTGAGTCG
TATTTATCTGGACTTGGGGACTCTTCAAAGTTTGCACCCTTTATAGGAAA
CAGATTCAACATCCTTTTTTACAATGGAGCTGCACTGTTTTACC
Run BLAST on NCBI

protein sequence of TCONS_00043466-protein

>TCONS_00043466-protein ID=TCONS_00043466-protein|Name=TCONS_00043466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
GLDEVAGGDAASVMKYFTEAIEDLAEVISNGEGDKSKTFSDMIIKIRSTM
SDLGPVNPLFNEKLRKLRQDLLPTAIKNWNEMSPSQQKEMSEMANYFCKL
HLLANFASETDKVLNSFEKLILSNDFDTVFAFNTKESGAARLVRTACKAF
HARGSDEAGVASYFESYLSGLGDSSKFAPFIGNRFNILFYNGAALFY
Run BLAST on NCBI

transcript from alignment at sc0004257:4..597

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043466 ID=TCONS_00043466|Name=TCONS_00043466|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at sc0004257:4..597 (Clytia hemisphaerica)
GGTAAAACAGTGCAGCTCCATTGTAAAAAAGGATGTTGAATCTGTTTCCT
ATAAAGGGTGCAAACTTTGAAGAGTCCCCAAGTCCAGATAAATACGACTC
AAAATAAGAGGCAACACCTGCTTCATCACTCCCCCTTGCATGAAAAGCCT
TACACGCAGTCCGCACAAGGCGTGCAGCACCAGATTCTTTTGTGTTGAAA
GCAAACACTGtatcaaaatcatttgataaTATAagcttttcaaaagaatt
taaaacctTATCAGTTTCAGAAGCAAAATTAGCTAGAAGATGTAACTTGC
AAAAGTAATTAGCCATTTCTGACATTTCCTTTTGCTGTGAAGGACTCATT
TCATTCCAGTTTTTTATAGCAGTTGGTAAAAGGTCCTGTCTTAGTTTTCT
TAGTTTTTCATTAAATAGTGGATTCACAGGACCCAGGTCAGACATGGTGC
TTCGAATTTTGATGATCATGTCTGAAAATGTTTTAGATTTATCCCCTTCC
CCATTTGAGATTACTTCAGCAAGGTCTTCAATAGCCTCTGTAAAATACTT
CATGACTGATGCAGCATCTCCTCCAGCTACCTCATCAAGTCCAA

Coding sequence (CDS) from alignment at sc0004257:4..597

>TCONS_00043466 ID=TCONS_00043466|Name=TCONS_00043466|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at sc0004257:4..597 (Clytia hemisphaerica)
GTAAAACAGTGCAGCTCCATTGTAAAAAAGGATGTTGAATCTGTTTCCTA
TAAAGGGTGCAAACTTTGAAGAGTCCCCAAGTCCAGATAAATACGACTCA
AAATAAGAGGCAACACCTGCTTCATCACTCCCCCTTGCATGAAAAGCCTT
ACACGCAGTCCGCACAAGGCGTGCAGCACCAGATTCTTTTGTGTTGAAAG
CAAACACTGtatcaaaatcatttgataaTATAagcttttcaaaagaattt
aaaacctTATCAGTTTCAGAAGCAAAATTAGCTAGAAGATGTAACTTGCA
AAAGTAATTAGCCATTTCTGACATTTCCTTTTGCTGTGAAGGACTCATTT
CATTCCAGTTTTTTATAGCAGTTGGTAAAAGGTCCTGTCTTAGTTTTCTT
AGTTTTTCATTAAATAGTGGATTCACAGGACCCAGGTCAGACATGGTGCT
TCGAATTTTGATGATCATGTCTGAAAATGTTTTAGATTTATCCCCTTCCC
CATTTGAGATTACTTCAGCAAGGTCTTCAATAGCCTCTGTAAAATACTTC
ATGACTGATGCAGCATCTCCTCCAGCTACCTCATCAAGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027162XLOC_027162Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043466-proteinTCONS_00043466-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043466-exon-sc0004257-1491911889:4..597TCONS_00043466-exon-sc0004257-1491911889:4..597Clytia hemisphaericaexon
TCONS_00043466-exon-sc0004257-1510915933:4..597TCONS_00043466-exon-sc0004257-1510915933:4..597Clytia hemisphaericaexon
TCONS_00043466-exon-sc0004257-1575043694:4..597TCONS_00043466-exon-sc0004257-1575043694:4..597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004257supercontigsc0004257:4..597 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.7372	0.988468	0.626022	0.714542	0.497078	0.294598	0.473893	0.221827	0.310612	0.192372	0	0.368228	0.183858	0	0.104652	1.17923	0.138353	0.212711	0.979575	1.43508	0.356383	0.260747	0.211315	0.480289	0	0	0.379068	0.404551	0	0.104206
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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