TCONS_00043416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043416
Unique NameTCONS_00043416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043416 ID=TCONS_00043416|Name=TCONS_00043416|organism=Clytia hemisphaerica|type=transcript|length=385bp
ATCAGAGAGATCAGCTATTCATGATGATTACCGGGTTAGCAGGGAGTGGA
AAAAGTTACTTAATTAATAACATTAGAGCTTTACTGAAGGAGAAATGTAT
TGTATCAGCCTACTTTGGAATAGCTGCATTTAATATTAATGGTAAGACTT
TGCATTCTTTATTGAATCTTCCAATAAGAGGAAAAAACCGAAACGATTTG
AAGGGTCCTGCACTCTTAAGGCTACAAGAAAGACTCAGTGGAGTTAAATA
TATGATTATTGATGAGTATTCtgttgttggtcaaaatatGCTAGGATGGA
TAGATAAACGGTGTAGACAAGGAACAGGTGAATCAGACAAAGCTTTTGGT
GGAATATCTATAATCTTGGTAGGAGATATTGCTNN
Run BLAST on NCBI

protein sequence of TCONS_00043416-protein

>TCONS_00043416-protein ID=TCONS_00043416-protein|Name=TCONS_00043416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
QRDQLFMMITGLAGSGKSYLINNIRALLKEKCIVSAYFGIAAFNINGKTL
HSLLNLPIRGKNRNDLKGPALLRLQERLSGVKYMIIDEYSVVGQNMLGWI
DKRCRQGTGESDKAFGGISIILVGDIA
Run BLAST on NCBI

transcript from alignment at sc0004208:2926..3310-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043416 ID=TCONS_00043416|Name=TCONS_00043416|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at sc0004208:2926..3310- (Clytia hemisphaerica)
ATCAGAGAGATCAGCTATTCATGATGATTACCGGGTTAGCAGGGAGTGGA
AAAAGTTACTTAATTAATAACATTAGAGCTTTACTGAAGGAGAAATGTAT
TGTATCAGCCTACTTTGGAATAGCTGCATTTAATATTAATGGTAAGACTT
TGCATTCTTTATTGAATCTTCCAATAAGAGGAAAAAACCGAAACGATTTG
AAGGGTCCTGCACTCTTAAGGCTACAAGAAAGACTCAGTGGAGTTAAATA
TATGATTATTGATGAGTATTCTGTTGTTGGTCAAAATATGCTAGGATGGA
TAGATAAACGGTGTAGACAAGGAACAGGTGAATCAGACAAAGCTTTTGGT
GGAATATCTATAATCTTGGTAGGAGATATTGCTNN

Coding sequence (CDS) from alignment at sc0004208:2926..3310-

>TCONS_00043416 ID=TCONS_00043416|Name=TCONS_00043416|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0004208:2926..3310- (Clytia hemisphaerica)
CAGAGAGATCAGCTATTCATGATGATTACCGGGTTAGCAGGGAGTGGAAA
AAGTTACTTAATTAATAACATTAGAGCTTTACTGAAGGAGAAATGTATTG
TATCAGCCTACTTTGGAATAGCTGCATTTAATATTAATGGTAAGACTTTG
CATTCTTTATTGAATCTTCCAATAAGAGGAAAAAACCGAAACGATTTGAA
GGGTCCTGCACTCTTAAGGCTACAAGAAAGACTCAGTGGAGTTAAATATA
TGATTATTGATGAGTATTCTGTTGTTGGTCAAAATATGCTAGGATGGATA
GATAAACGGTGTAGACAAGGAACAGGTGAATCAGACAAAGCTTTTGGTGG
AATATCTATAATCTTGGTAGGAGATATTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027114XLOC_027114Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043416-proteinTCONS_00043416-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043416-exon-sc0004208-1575043694:2926..3310TCONS_00043416-exon-sc0004208-1575043694:2926..3310Clytia hemisphaericaexon
TCONS_00043416-exon-sc0004208-1510915933:2926..3310TCONS_00043416-exon-sc0004208-1510915933:2926..3310Clytia hemisphaericaexon
TCONS_00043416-exon-sc0004208-1491911889:2926..3310TCONS_00043416-exon-sc0004208-1491911889:2926..3310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004208supercontigsc0004208:2926..3310 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.30758	1.40779	2.85303	2.83012	3.71059	2.66251	4.51381	3.08337	3.33521	5.44914	1.07648	3.62554	2.50652	3.27176	1.17962	3.05817	2.84648	1.72044	5.2817	3.5909	5.84281	3.69264	0.866396	1.75562	3.19914	3.95358	5.25577	3.77066	3.71036	1.20857
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0003678 DNA helicase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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