TCONS_00043401 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043401
Unique NameTCONS_00043401
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043401 ID=TCONS_00043401|Name=TCONS_00043401|organism=Clytia hemisphaerica|type=transcript|length=603bp
CTTAACTCAAAATTTGACCATGAAAAAGCTACTTGTGGCCTAAATAGCAA
AAACTATCTAACTGTCCCTTTATCAAATCGTGAagaattttatagatttt
tgaaCTTGCACGAATATTTTCTTTGATACATGTCAAAATTATGTGGTTGA
ACGATAATCTATATTTCAAGCGTCCAAAGACCAATAGTTTCTCCTATACC
TTGAACACGTCATGTTTGGAACGACAGCAGTTCATGGAGAAATTCATTGC
AGAAGTACAACAAGTGCATGGAGATGTCCGTGGTGGAATACTCAACCAAC
TGGTTGATTGTTGTGCTTCAGGTGTGAATGCAACAGGACACAATCTCTAC
TTGGCTGATGGCGAGGGAAAGCGTATTTGGAAATTTCTTCCTGAATCAAC
GAAGCCGGTCAACCTACAAATTGTACGCGAAGGATCCACCATAGCATGTT
ATGTAGCTGCCACCAAAGAAACTATATGTACTTCTGATATCAAGGACGAA
CGTTATCCAGAAGGTGTCGGTGTCAAAGGTGTGTTATCTTTTAACTTGAC
CGTCTGGTTTCCAAAATCATAGTAGCTATacgagggggtttatctaaaaa
ATC
Run BLAST on NCBI

protein sequence of TCONS_00043401-protein

>TCONS_00043401-protein ID=TCONS_00043401-protein|Name=TCONS_00043401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MWLNDNLYFKRPKTNSFSYTLNTSCLERQQFMEKFIAEVQQVHGDVRGGI
LNQLVDCCASGVNATGHNLYLADGEGKRIWKFLPESTKPVNLQIVREGST
IACYVAATKETICTSDIKDERYPEGVGVKGVLSFNLTVWFPKS
Run BLAST on NCBI

transcript from alignment at sc0004193:2803..8048-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043401 ID=TCONS_00043401|Name=TCONS_00043401|organism=Clytia hemisphaerica|type=transcript|length=5246bp|location=Sequence derived from alignment at sc0004193:2803..8048- (Clytia hemisphaerica)
CTTAACTCAAAATTTGACCATGAAAAAGCTACTTGTGGCCTAAATAGCAA
AAACTATCTAACTGTCCCTTTATCAAATCGTGAAGAATTTTATAGATTTT
TGAACTTGCACGAATATTTTCTTTGATACATGTCAAAATTATGTGGTTGA
ACGATAATCTATATTTCAAGCGTCCAAAGACCAATAGTTTCTCCTATACC
TTGGTGATTTTCAATAATAATTTACTTATTTTTTAACTGTAATTCATTNT
ACCTTGGTGATTTTCAATAATAATTTACTTATTTTTTAACTGTAATTCAT
TCCCTTTTTCAACCCTTTCCGTACCGATGTCGGCATATGCCATCAAGAAC
CCTTTTCATTTATTTGCCAATGACGGTATTTGCCGACATGACCACTTTCC
ATTTATTTGCCAATGACGGTATTTGCCGACATGACAACTTTGCACTTATT
TGCTGTGGCTTTTTTAGAAGTTTGTTGAAAGTTCGATTTTGAACTAGATT
TCATTAAATGACTCACTTGAATAATTAGAATATATTTGAAAGATGTTTTT
CATAATTATACAATTTCAATTCATATGTTGACAGCAAACAGGTCAAACCT
TCTTTTTTTTCCGTGGCAAATTGCTTGAGCACATTCAACCTGAAATTTTG
AGTAGAAATTAGCTATCTACTAAGCTTACTTCCAAACTGAAGTAAGAACT
GGTAATGAGAATCCAAAATATTTAAGGATTGGCTCATTATTTTTTTCTGA
TTTTTTGCACAATGATGCAAAATCGCAATGCCGAAAATGTGACGGAGCCC
GATATTTGTTGGGCAAATTTGGGCCAAAAACTGCCTAAAAATAGGTTTTT
TTGGACTGCAATGTTGCTTCATTGGTTTTCTCTGATTTTTGGCAGAAAGA
TAGAGGGCAAGGTTCTATAAAAGATGGCNNNNNNNNNNNNNNNNNNNNNN
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NNNNNAAGGAAAACTTTTTTTTGTTTAGTCAGCACAAAATCGAACACAAT
ATAACAATAGGAAACACCGGCCCGACACAAAACATGTGTCTGATATGAAA
CGGGTTTTGTTTTTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTT
TAATTTAAAAGCTTTTTCACATGAGATTGACCCGTGTCAAGATTGTGAAG
AAAGATTGGTCAGAAAAAGGAAAAGAAAAACATTTTTTGCTTATATCTGC
ATAATATAACAATAGGCAGACACTGAGTTTATTCTCGTATAGAGAAACAN
CCGTGTCAAGATTGTGAAGAAAGATTGGTCAGAAAAAGGAAAAGAAAAAC
ATTTTTTGCTTATATCAGCATAATATAACAATAGGCAGACACTGAGTTTA
TTCTCGTATAGAGAAACAAGATTATTTATGTAAAACTATAAAAACTTTAA
TATGAATTTTTTTCCAATTTCTCTCCTTCAGAACACGTCATGTTTGGAAC
GACAGCAGTTCATGGAGAAATTCATTGCAGAAGTACAACAAGTGCATGGA
GATGTCCGTGGTGGAATACTCAACCAACTGGTTGATTGTTGTGCTTCAGG
TATGCTCTCAAATAAGTTTTCTCGGTTTGTTATGATCAAGTTACAGCCTG
AAGACAAGCTGGTCAGGGTAAATTTTTCAAGCTCCAAAATCTTCTTCAGG
TTGGATTTACTTTAGAAATTTTCCTGGAATTTTGGGACCTAGAAAAGAGA
CAATTTTTGAGACAAAGTTTAGTAAAAATCTTTAATTAAATTTAAAGCTT
TTTCCAATTCCATATATTTTCAGGTGTGAATGCAACAGGACACAATCTCT
ACTTGGCTGATGGCGAGGGAAAGGTTTGTTTGTTGTTCACCATAACTTTC
TTGAGATGCTATCAAGGCTGAATCATAGTCGATCATCTTCCTTATGGAGA
GACAGGCTTTGGAAAAATTAAACTTTGCTGTACTTTTTTATAGACGAACG
AGCAAATCAATCAGATATCGTCTGGGCACAAATTACAATAATTTTTCATT
ATAAATTTTAGCGTATTTGGAAATTTCTTCCTGAATCAACGAAGCCGGTC
AACCTACAAATTGTACGCGAAGGATCCACCATAGCATGTTATGTAGCTGC
CACCAAAGAAACTATATGTACTTCTGATATCAAGGTATAGCGATGCGGTG
TTTGACACTACAAAATTTTTGATGAAATCGCTCATTAAATCAGGCCGAGC
AGATCCTTCAATGCTTTATGCTTGATAACGTATTACTTCGAATAAACGCC
CCGGACGTTTATTAAATTTTTAGAATTTTAGGAGGGGTTTTCATTCGAGG
GGGCGTTTAAAAGAAGGGGGTGTTTATTGAATAATCTTTAACTAAGGTGC
ACTTTAATAAAATTATTGGGAACCTTTTTTTGCCTTTTCCTTTTCTTTCA
GTTTCAAATATGTCATTTTAGAGAAAATATGAGTCAAAAATTAGCTTGAA
TACTGAAAGACTACAATTACTAACATATTTTCCTCCTATTTGATTCTCCC
TCGCAGTTACCTGTTTCAAATAAACGCCCCTCCTAGAGGAGAGGCGTTTA
TTCGAAGGGGTATCTATTTCAGGGGGCGTTCATTAAAACTTTTTCTTTAG
GGAGTGGCGTTTATTCGAGGGGGTGGTTTCAAAGAAAGGGGCGTTTATTC
GAAGTAATACGTTATCATTTCATATTCTTTTACTTTCTGTTCGCTCATTT
TTTAATATATGTGGAAACCACATCAGTGAAATAAGACTTATTCCCAAGAG
AGTGGTTTTCACCCTTAACAAGCGAATATGGCTTTTAAAATTTTTCTAAA
GTTGAAGAATCTGCACGCTAAATTGTTTTGCCATTGGTTATTTTCCCCTT
TAAATTCCGCCAAACATTATCGAATTTTTCACTTGTCAGCATTACCAACC
AACCAATTAATCAATTAATCAATCAATTTTCTTTCAGGACGAACGTTATC
CAGAAGGTGTCGGTGTCAAAGGTGTGTTATCTTTTAACTTGACCGTCTGG
TTTCCAAAATCATAGTAGCTATACGAGGGGGTTTATCTAAAAAATC

Coding sequence (CDS) from alignment at sc0004193:2803..8048-

>TCONS_00043401 ID=TCONS_00043401|Name=TCONS_00043401|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at sc0004193:2803..8048- (Clytia hemisphaerica)
GACGAACGTTATCCAGAAGGTGTCGGTGTCAAAGGTGTGTTATCTTTTAA
CTTGACCGTCTGGTTTCCAAAATCATAGCGTATTTGGAAATTTCTTCCTG
AATCAACGAAGCCGGTCAACCTACAAATTGTACGCGAAGGATCCACCATA
GCATGTTATGTAGCTGCCACCAAAGAAACTATATGTACTTCTGATATCAA
GGTGTGAATGCAACAGGACACAATCTCTACTTGGCTGATGGCGAGGGAAA
GAACACGTCATGTTTGGAACGACAGCAGTTCATGGAGAAATTCATTGCAG
AAGTACAACAAGTGCATGGAGATGTCCGTGGTGGAATACTCAACCAACTG
GTTGATTGTTGTGCTTCAGATGTGGTTGAACGATAATCTATATTTCAAGC
GTCCAAAGACCAATAGTTTCTCCTATACCTTGGACGAACGTTATCCAGAA
GGTGTCGGTGTCAAAGGTGTGTTATCTTTTAACTTGACCGTCTGGTTTCC
AAAATCATAGCGTATTTGGAAATTTCTTCCTGAATCAACGAAGCCGGTCA
ACCTACAAATTGTACGCGAAGGATCCACCATAGCATGTTATGTAGCTGCC
ACCAAAGAAACTATATGTACTTCTGATATCAAGGTGTGAATGCAACAGGA
CACAATCTCTACTTGGCTGATGGCGAGGGAAAGAACACGTCATGTTTGGA
ACGACAGCAGTTCATGGAGAAATTCATTGCAGAAGTACAACAAGTGCATG
GAGATGTCCGTGGTGGAATACTCAACCAACTGGTTGATTGTTGTGCTTCA
GATGTGGTTGAACGATAATCTATATTTCAAGCGTCCAAAGACCAATAGTT
TCTCCTATACCTTGGACGAACGTTATCCAGAAGGTGTCGGTGTCAAAGGT
GTGTTATCTTTTAACTTGACCGTCTGGTTTCCAAAATCATAGCGTATTTG
GAAATTTCTTCCTGAATCAACGAAGCCGGTCAACCTACAAATTGTACGCG
AAGGATCCACCATAGCATGTTATGTAGCTGCCACCAAAGAAACTATATGT
ACTTCTGATATCAAGGTGTGAATGCAACAGGACACAATCTCTACTTGGCT
GATGGCGAGGGAAAGAACACGTCATGTTTGGAACGACAGCAGTTCATGGA
GAAATTCATTGCAGAAGTACAACAAGTGCATGGAGATGTCCGTGGTGGAA
TACTCAACCAACTGGTTGATTGTTGTGCTTCAGATGTGGTTGAACGATAA
TCTATATTTCAAGCGTCCAAAGACCAATAGTTTCTCCTATACCTTGGACG
AACGTTATCCAGAAGGTGTCGGTGTCAAAGGTGTGTTATCTTTTAACTTG
ACCGTCTGGTTTCCAAAATCATAGCGTATTTGGAAATTTCTTCCTGAATC
AACGAAGCCGGTCAACCTACAAATTGTACGCGAAGGATCCACCATAGCAT
GTTATGTAGCTGCCACCAAAGAAACTATATGTACTTCTGATATCAAGGTG
TGAATGCAACAGGACACAATCTCTACTTGGCTGATGGCGAGGGAAAGAAC
ACGTCATGTTTGGAACGACAGCAGTTCATGGAGAAATTCATTGCAGAAGT
ACAACAAGTGCATGGAGATGTCCGTGGTGGAATACTCAACCAACTGGTTG
ATTGTTGTGCTTCAGATGTGGTTGAACGATAATCTATATTTCAAGCGTCC
AAAGACCAATAGTTTCTCCTATACCTTGGACGAACGTTATCCAGAAGGTG
TCGGTGTCAAAGGTGTGTTATCTTTTAACTTGACCGTCTGGTTTCCAAAA
TCATAGCGTATTTGGAAATTTCTTCCTGAATCAACGAAGCCGGTCAACCT
ACAAATTGTACGCGAAGGATCCACCATAGCATGTTATGTAGCTGCCACCA
AAGAAACTATATGTACTTCTGATATCAAGGTGTGAATGCAACAGGACACA
ATCTCTACTTGGCTGATGGCGAGGGAAAGAACACGTCATGTTTGGAACGA
CAGCAGTTCATGGAGAAATTCATTGCAGAAGTACAACAAGTGCATGGAGA
TGTCCGTGGTGGAATACTCAACCAACTGGTTGATTGTTGTGCTTCAGATG
TGGTTGAACGATAATCTATATTTCAAGCGTCCAAAGACCAATAGTTTCTC
CTATACCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027101XLOC_027101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043401-exon-sc0004193-1575043694:7846..8048TCONS_00043401-exon-sc0004193-1575043694:7846..8048Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1575043694:4300..4417TCONS_00043401-exon-sc0004193-1575043694:4300..4417Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1575043694:4026..4075TCONS_00043401-exon-sc0004193-1575043694:4026..4075Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1575043694:3715..3837TCONS_00043401-exon-sc0004193-1575043694:3715..3837Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1575043694:2803..2911TCONS_00043401-exon-sc0004193-1575043694:2803..2911Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1510915933:7846..8048TCONS_00043401-exon-sc0004193-1510915933:7846..8048Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1510915933:4300..4417TCONS_00043401-exon-sc0004193-1510915933:4300..4417Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1510915933:4026..4075TCONS_00043401-exon-sc0004193-1510915933:4026..4075Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1510915933:3715..3837TCONS_00043401-exon-sc0004193-1510915933:3715..3837Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1510915933:2803..2911TCONS_00043401-exon-sc0004193-1510915933:2803..2911Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1491911889:7846..8048TCONS_00043401-exon-sc0004193-1491911889:7846..8048Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1491911889:4300..4417TCONS_00043401-exon-sc0004193-1491911889:4300..4417Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1491911889:4026..4075TCONS_00043401-exon-sc0004193-1491911889:4026..4075Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1491911889:3715..3837TCONS_00043401-exon-sc0004193-1491911889:3715..3837Clytia hemisphaericaexon
TCONS_00043401-exon-sc0004193-1491911889:2803..2911TCONS_00043401-exon-sc0004193-1491911889:2803..2911Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043401-proteinTCONS_00043401-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004193supercontigsc0004193:2803..8048 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.310916	1.49122	2.80088	3.35518	0.180496	0.371335	12.1496	11.8706	5.6004	4.77187	10.0547	6.99539	1.02779	2.23064	1.15116	1.3793	3.90217	4.06374	5.63328	9.84988	5.96199	6.55668	2.22638	3.85474	0.391245	0.34901	12.5541	17.7869	1.31196	0.948486
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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