transcript:BL74024_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL74024_cuf0
Unique Nametranscript:BL74024_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL74024_cuf0

>transcript:BL74024_cuf0-protein ID=transcript:BL74024_cuf0-protein|Name=transcript:BL74024_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=102bp
MSDFLESEAEESMGEESGDEEEVTARKSRAVMGSGDEEEEDEGKCLPSPS
SILLKECPLLLQYVQLSGFLRCYCKFFAFAAVLFCGTREKKVCFKFVVEA
IL
Run BLAST on NCBI

mRNA from alignment at xfSc0009584:41..1118+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL74024_cuf0 ID=transcript:BL74024_cuf0|Name=transcript:BL74024_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1078bp|location=Sequence derived from alignment at xfSc0009584:41..1118+ (Branchiostoma lanceolatum)
TTAATTTAAATTATGCATTTTACTACTACTTCCAGGTAAAACAGCACACT CCAGTTTGACTGCTGTGAAAGCTGCTGTGCTGTACAGAACACCATGTCAG ACTTTCTGGAGAGCGAGGCTGAGGAGTCGATGGGGGAGGAGTCTGGGGAC GAGGAGGAGGTCACCGCGAGGAAGAGTCGGGCGGTGATGGGGAGTGGTGA TGAGGAGGAGGAAGATGAGGGTAAATGTCTCCCATCTCCTTCTTCTATTT TGCTTAAAGAGTGTCCCCTCCTTCTCCAGTACGTACAGCTTTCTGGTTTC CTTAGATGTTACTGTAAGTTCTTTGCTTTTGCGGCGGTTTTATTCTGCGG TACGAGGGAAAAGAAGGTGTGTTTTAAATTTGTGGTTGAAGCAATTTTGT AGTATCTGTATCTATATTATATAGCCGGTATAACCATTCGGCGTAACACA CCAGTAGTACATTACTCAGTAGTAATACATTGGAAACGCATATTTGCGGT GTCAGAAATTTAGAGTGGAGAGGTCACCACGAAAAATGCATAAAAATAAA ATCATCGCAAACATTTCAAGATTTACAGTACATTGTATTGGGAGAACTCT GTGTATAGGCTATAGCTAGGCAAGTAGCTTCTTACAGGACGGTTCTTACA ATATTGTCCCACCTCATCAGTATTTAATTTCATCATCAAAAAATTATAGG TGGGGTCTTCTTCATAATTTCATGACTAAATTCTGCATGTATACACATGG GAATATCACAGAATGGAACTCAATATTGCAAAATTTAACTGCCTCTTGGG TAAGCTACATTTGTATGAAACTTGTCATGTCGAGACAAGTCATTGGATGT AAACTAACAACATAACCCGCAACCATTACATACTTGCAAATTCTGCCAAG TGTGCAAAGCCTGTGCTAATGGACTTGTCTCTTCAGTACGAATGTCTGGT TGATGACAGTGTGACAATCAGATACTTATTAGTATGGCTCTAAACTTATT TCAGTTTTATAAAGAATATATGTATGTGTAGGTGACTTGCCTATGGTGAA TTGGTGATTTGGATGCATTATTAGTATT

Coding sequence (CDS) from alignment at xfSc0009584:41..1118+

>transcript:BL74024_cuf0 ID=transcript:BL74024_cuf0|Name=transcript:BL74024_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=309bp|location=Sequence derived from alignment at xfSc0009584:41..1118+ (Branchiostoma lanceolatum)
ATGTCAGACTTTCTGGAGAGCGAGGCTGAGGAGTCGATGGGGGAGGAGTC
TGGGGACGAGGAGGAGGTCACCGCGAGGAAGAGTCGGGCGGTGATGGGGA
GTGGTGATGAGGAGGAGGAAGATGAGGGTAAATGTCTCCCATCTCCTTCT
TCTATTTTGCTTAAAGAGTGTCCCCTCCTTCTCCAGTACGTACAGCTTTC
TGGTTTCCTTAGATGTTACTGTAAGTTCTTTGCTTTTGCGGCGGTTTTAT
TCTGCGGTACGAGGGAAAAGAAGGTGTGTTTTAAATTTGTGGTTGAAGCA
ATTTTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL74024gene:BL74024Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL74024_cuf0-E1BL74024_cuf0-E1-1564476830-540013Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL74024_cuf0transcript:BL74024_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0009584genomexfSc0009584:41..1118 +
Properties
Property NameValue
Transcript idBL74024_cuf0
Biotypeprotein_coding