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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004065 ID=TCONS_00004065|Name=TCONS_00004065|organism=Clytia hemisphaerica|type=transcript|length=1443bp
GGCGAACCTTTGGGGATAAACTGAGATACAACACAGGTCCCTGTTTTGTT
TTAGCTAAATCAGTTACTAACTGCcacatttcaatttcatgtaACCAATG
TTAAAAGTCTCGGAGTAACTCCATCTTCGGAGAACGGGGGCAATTTATAC
TTTTGCCCTATCGAAACAACACCTGCCATTTTCAACAATTAACCACTTTA
GTTTATACTTTTATAACAACcaaagttcataaactttatcACACTTTAGT
AACCAACCAATAATATCTTTACTGCAAAACCACCGAATGCTGCTACCATG
TAAATTGGTTGGACATCTCAACCAACAGGAtcacttctttatttaattat
tcCACTAAAAGAACAATGCTAACAGAACCAACCTTGTAGtttaatcccgg
gattgaaaaaacctaGAGAAAATCTTTTCCATACATGATATAATATGTAG
CtgaggaattttaaaacaaggcATCCTAAGTGAAACAATTGATGGTGGAG
AAGTTGTGATTgaaggtttttgtaattagacagcgTGACATAGGTTTGTT
TTtggcataacaaagacaaacacaggaggtaagtcgaaaaaaatgtcaaa
tgaaGATAGCACgattgagaaaaacttaaaattacCTGTCAAGAAATATC
ACAAGACTTTTGATCACAATGGAATTCCTTTTGTTATGAGATGGAGTATA
GATGATGTGGCCGAATGGGTGACTTCTGAACTCAAATTTCCTCAGTATAA
AGATTGCTTTCGAAATAATTATGTGAGTGGTAAAAGATTAGTCCAGATGA
CTGCATCAAATTTACCTCGGATGGGAATTACTGATTTTGAACATATTAAG
AAAATCACTTACGAAATTCGTCAACTCTTGGGGATCGAAGAACCAAATTG
GAATCGATCCATAACACTTCCTCCTAAAGATACCGTTGAACATTATCTTG
AACGGAAATCCGTTTCCGGAAGAAACACTGACGGTTTGACTTTTGAGGAA
CATGTCCGGTATTtagaagaatttaaaaaacatgGCGTTCCTGAGGAAGA
AAAACATCATTGGACAGAAACGGCAGAGGCCAGAAAGAAAGTTTTGTGAT
CACCAGGGTCGATTATGGAGGTTTAGAACGGATTAAATGATGATTTGAAG
AGATTCGTTCGCTTTGGTAAAGGTGAGGCTTTCTTTGACATAGTTTGGTT
TTAAGAATCATTTATACATGCTCATTGTTGCCGTCGtagtttcattttat
ttataCACTAAAtattgaatctttttgaaacaaTGTCAATTCTAGTCGAA
GCTTAAAAGAAATCTGCATTTCTTTTGTTAAGGGTAATGTTTTAATGACA
AATTCATTGAAGatggttttttgagattttatatCGAGGGTTTACCTTCC
TTTTCAAAATTATGTAGTGTGTCAACAAATAGATACAGTTgag Run BLAST on NCBI transcript from alignment at sc0000039:715643..719539+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004065 ID=TCONS_00004065|Name=TCONS_00004065|organism=Clytia hemisphaerica|type=transcript|length=3897bp|location=Sequence derived from alignment at sc0000039:715643..719539+ (Clytia hemisphaerica)
GGCGAACCTTTGGGGATAAACTGAGATACAACACAGGTCCCTGTTTTGTT
TTAGCTAAATCAGTTACTAACTGCcacatttcaatttcatgtaACCAATG
TTAAAAGTCTCGGAGTAACTCCATCTTCGGAGAACGGGGGCAATTTATAC
TTTTGCCCTATCGAAACAACACCTGCCATTTTCAACAATTAACCACTTTA
GTTTATACTTTTATAACAACcaaagttcataaactttatcACACTTTAGT
AACCAACCAATAATATCTTTACTGCAAAACCACCGAATGCTGCTACCATG
TAAATTGGTTGGACATCTCAACCAACAGGAtcacttctttatttaattat
tcCACTAAAAGAACAATGCTAACAGAACCAACCTTGTAGtttaatcccgg
gattgaaaaaacctaGAGAAAATCTTTTCCATACATGATATAATATGTAG
CtgaggaattttaaaacaaggcATCCTAAGTGAAACAATTGATGGTGGAG
AAGTTGTGATTgaaggtttttgtaattagacagcgTGACATAGGTTTGTT
TTtggcataacaaagacaaacacaggaggtaaggtaaactGCGTTTTGAC
ttcttttgaccatttttctaatacaaaataatttcaaacttgacttcact
gaatTTACTCTGTTTATACTGGCTGAGAGAAAGTAATGTATGCTGGAGTA
ATTTGATACTCAATAGACCATCGCGTTCTTCTATTAAACGACTATtctta
tctctaaagaagggtgttggaattagaccagactctcccactcgatacaa
ttgattcatttttcaatcaatgACCAATCGATAACCAAGGGATTTTGTGC
TATATCTGATACACAAATAAGTGATATAATTCGCAATAGGAAAGTTCCAA
ATTTTCAGTATAGTTGTTACAATTTTACCCTATTTTGCaatattagaaat
atttttcgcTATTTCAAAAATAGCCAAATTCTGCCTCATAATTTTAAACC
TGTTTTAAAAATTtgctttattttatttcattttaaattgttttttatac
TGATTTGCTTTTACTagctttatcaaattttttatttagaggGAGAATTT
GGGCTTCTTAagtaaaataattgttaaattgtgaaCAAATTGCATTCTTC
ATTATGGGAAAACAAATTTCTGTACGTTTattactcttgggtacctaata
gctggggggggggttggaataaaaatgtcctgggtggaaaatttgcTAAT
ATAGCAGAGGTAACGCAAAagaggaaactttcaaaaacattttctcaaaa
attaataagcagggagattggaataagaatgtcctgcaTGGGAAATTTTC
GAATAATTAATAATCGGAGAGACGACTATTAGGTATACCCAAGAGTAGTC
TGGAAGTATGNtcaatgtttcttaagaaatcggccttttgagccttaaat
gtttcttacatgtttctaaactttgtcaagtttaaaggacgcatgtcgat
aatacaatagtctaataAACTAATCTAaggtactttcctatcttctatat
tgattttctgactgttatgtaagtatttttctggAACTTCGCCTTGATTg
gaagtttcttaaaaaaacgaattaaaaaatttattttctcattctcagcc
tcagcatgtttcttagatgtttcttagtttttaggcattctgagcctcgt
ttttcttaaaagtgtttcttaaaaaaaaaaaaaacgtgtatgttgaCATT
AACTTATATGAAAAAAGTGTTCATACTCCCAAAAACCTTCAGATCTTTtc
ttatttcaaaaatgaaagatcTGTGAATAATAAAGGATCCTGGTTTTTCC
CTCGCTAAATATTACCTTATTTTCGTtcttttaaagtcgaaaaaaatgtc
aaatgaaGATAGCACgattgagaaaaacttaaaattacCTGTCAAGAAAT
ATCACAAGACTTTTGATCACAATGGAATTCCTTTTGTTATGAGATGGAGT
ATAGATGATGTGGCCGAATGGGTGACTTCTGAACTCAAATTTCCTCAGTA
TAAAGTAAGTCATTTGTTTGTATTCAGAATCAGTAAATTTAAGCCTCAAT
TTCTCCTTTTGCAAGTCCATTCCTCCTCGTAAGGAATAAGAGGCAAACAA
TCTTCTTTCTTACTTTTCGGAATTTCCCAGGATGTTGCAAATACACTTTT
ACTTTATTTCTGATAGGCTTTGAAGACCAGCATTTCCTTGGCCATGTCAA
TGGGATCATCATTCTTTTAGAACGTGGTTCTTAGGTATTTGTGAGAAATC
TCAATAAAAATAATGTATCCTTCTTGAGAAATTACTACCCAATAAATAGT
CAAAGTATTTATTAACTTCACTTGCTTTCACCATTGATTCCAGGATTGCT
TTCGAAATAATTATGTGAGTGGTAAAAGATTAGTCCAGATGACTGCATCA
AATTTACCTCGGATGGGAATTACTGATTTTGAACATATTAAGGTAATTGA
ACCAACTTTCAATTGATACACCACTGGGACCTTACTCCCACTAgaatatt
tggcaaaaatttcgtccccagtgAGACAATACCCTGgagtttcagcccca
ctgggatatcaactttgatttcatccccattcgaaattcaatgtctcACT
CCAAAACCATGCCTACTGAATTGTTtcaccttggaacaatagaattgcta
ttctcattgggatttcaatataaattttGATCCCCACGGAGAAAAGAAGT
TCCACcagggttgtgagacaggggtgtattgacGGCGTTCTCATGCTGGT
AGatcattctttatttttatgTAGCCCGCTTaaactttcttccaaatttC
TTGAACACTTTGTAAAATCCTATTTAATTGTCTGGACACCAAGTTGGCCA
TCATATCTTCCAAATTTCTTGAACACTGAGTAATCCTATTTATTTTTCTG
GACACCAAATAAGCCATCTATGCATATTGGGGTCATTCTACAACCAGGAG
TGATTTTAATCCTCCCTTACCCTTTCTTGTGCTAACAAAGAGGTTTAGTG
AGATTATCGCCTACTTTTGTTATCATTTGGGCAAGTTATCACAGAAACTT
TTTTAGCCAGTTTTGGCATGGTGCATCATTGTATCTTCTTGTTGACAGTG
TCCTATTAGTGTGACATGTCCAATTGGAATTAGTTGCAATTCAGGTATCT
ATGATtgagaaattttaaaaacattttttttttttgctttttcttcaaAC
ATATTTCCTAGGTATTAAAGGcattataatataatatatatatttttata
tcagAAAATCACTTACGAAATTCGTCAACTCTTGGGGATCGAAGAACCAA
ATTGGAATCGATCCATAACACTTCCTCCTAAAGATACCGTTGAACATTAT
CTTGAACGGAAATCCGTTTCCGGAAGAAACACTGACGGTTTGACTTTTGA
GGAACATGTCCGGTATTtagaagaatttaaaaaacatgGCGTTCCTGAGG
AAGAAAAACATCATTGGACAGAAACGGCAGAGGCCAGAAAGAAAGTTTTG
TGATCACCAGGGTCGATTATGGAGGTTTAGAACGGATTAAATGATGATTT
GAAGAGATTCGTTCGCTTTGGTAAAGGTGAGGCTTTCTTTGACATAGTTT
GGTTTTAAGAATCATTTATACATGCTCATTGTTGCCGTCGtagtttcatt
ttatttataCACTAAAtattgaatctttttgaaacaaTGTCAATTCTAGT
CGAAGCTTAAAAGAAATCTGCATTTCTTTTGTTAAGGGTAATGTTTTAAT
GACAAATTCATTGAAGatggttttttgagattttatatCGAGGGTTTACC
TTCCTTTTCAAAATTATGTAGTGTGTCAACAAATAGATACAGTTgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004065-exon-sc0000039-1491911889:715643..716225 | TCONS_00004065-exon-sc0000039-1491911889:715643..716225 | Clytia hemisphaerica | exon |
| TCONS_00004065-exon-sc0000039-1510915933:715643..716225 | TCONS_00004065-exon-sc0000039-1510915933:715643..716225 | Clytia hemisphaerica | exon |
| TCONS_00004065-exon-sc0000039-1575043694:715643..716225 | TCONS_00004065-exon-sc0000039-1575043694:715643..716225 | Clytia hemisphaerica | exon |
| TCONS_00004065-exon-sc0000039-1491911889:717529..717696 | TCONS_00004065-exon-sc0000039-1491911889:717529..717696 | Clytia hemisphaerica | exon |
| TCONS_00004065-exon-sc0000039-1510915933:717529..717696 | TCONS_00004065-exon-sc0000039-1510915933:717529..717696 | Clytia hemisphaerica | exon |
| TCONS_00004065-exon-sc0000039-1575043694:717529..717696 | TCONS_00004065-exon-sc0000039-1575043694:717529..717696 | Clytia hemisphaerica | exon |
| TCONS_00004065-exon-sc0000039-1491911889:718036..718134 | TCONS_00004065-exon-sc0000039-1491911889:718036..718134 | Clytia hemisphaerica | exon |
| TCONS_00004065-exon-sc0000039-1510915933:718036..718134 | TCONS_00004065-exon-sc0000039-1510915933:718036..718134 | Clytia hemisphaerica | exon |
| TCONS_00004065-exon-sc0000039-1575043694:718036..718134 | TCONS_00004065-exon-sc0000039-1575043694:718036..718134 | Clytia hemisphaerica | exon |
| TCONS_00004065-exon-sc0000039-1491911889:718947..719539 | TCONS_00004065-exon-sc0000039-1491911889:718947..719539 | Clytia hemisphaerica | exon |
| TCONS_00004065-exon-sc0000039-1510915933:718947..719539 | TCONS_00004065-exon-sc0000039-1510915933:718947..719539 | Clytia hemisphaerica | exon |
| TCONS_00004065-exon-sc0000039-1575043694:718947..719539 | TCONS_00004065-exon-sc0000039-1575043694:718947..719539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:715643..719539 + |
Blast
BLAST of TCONS_00004065 vs. Swiss-Prot (Human)
Match: SAM15 (Sterile alpha motif domain-containing protein 15 OS=Homo sapiens GN=SAMD15 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.841e-27 Identity = 56/125 (44.80%), Postives = 83/125 (66.40%), Query Frame = 2
Query: 635 PVKKYHKTFDHNGIPFVMRWSIDDVAEWVTSELKFPQYKDCFRNNYVSGKRLVQMTASNLPRMGITDFEHIKKITYEIRQLLGIEEPNWNRSITLPPKDTVEHYLERKSVSGRNTDGLTFEEHVR 1009
P K F+H + W ++VAEW+ S+L FPQYK+CF N++SG++L+ + SNLP+MGIT+FE +K I+ ++LL IEEP + RSI+LP +D + YLE+K +G +D LT E V+
Sbjct: 532 PEKGTELQFEH------LNWDPEEVAEWI-SQLGFPQYKECFITNFISGRKLIHVNCSNLPQMGITNFEDMKAISRHTQELLEIEEPLFKRSISLPYRDIIGLYLEQKGHTGIKSDSLTLSEFVK 649
The following BLAST results are available for this feature:
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