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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84063_cuf0 >transcript:BL84063_cuf0-protein ID=transcript:BL84063_cuf0-protein|Name=transcript:BL84063_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=121bp
MSSCAFAVGFLGLLTAVLSLIQGCPDVDLTLTPWNPGHDPTAQVVVGRGQ
KYLLQSSATFFSLEVKDGGRLVFADLGPTSQAEIVLRSREIIVRSDGEFH
IGSETCPYQGKVTVSLYGRKD Run BLAST on NCBI mRNA from alignment at Sc0000747:54..5371- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84063_cuf0 ID=transcript:BL84063_cuf0|Name=transcript:BL84063_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5318bp|location=Sequence derived from alignment at Sc0000747:54..5371- (Branchiostoma lanceolatum)
GAAACGTGTAGTACACTTGGCTTAAGATGTCAAGCTGCGCGTTTGCAGTC
GGATTTTTGGGTCTTCTGACTGCGGTTCTATCGCTGATTCAAGGTAAGGA
TCTGAATTCTTGCTTACTTTCTTGATTTAACATTCTTTATTTGTGTGCAA
AGAACCGTAGTTTTTACACAAAACATGTGGCATCGTGTGGTGTAATGGTT
ATAGCGTTTGGCCCAAAGTCGAATGAGATGCCCCGTTGTTGTGTCATTGG
GAAAGGTTGGTAGTCCTTCGTATTGGAAGACGACTGTGAGTGTACTCATC
CCGGGGAGGTGAGGTGTGAGGGGCGGAATGGGATGTGTGTGATGATGACG
GCCCGGCCCACCAACTCACTGGCAACCACGGCGCCTCTGTTTGTCTGCTA
AGCTTCGGGTCGTCGCCTGTCGCCGGCGGGAGATAGAAATGGTCTTTGTC
GGCTTCGCCTCAAACTTCCGCTACTACTGGATATCTTTGCAAAAGTCCAA
TCCCTGTCTATCTCTTTACGATTTTTGTCCGTCAGGAAAAACTGACGCTG
GCTAGAGCCCTGGACTGTGACCTCATGTGGAGAAGGAAAGTTGAGAAAAA
AACCACAAACTTTCACAGAATTCTCCTCAGTTTACTCGGTTGTAAATGAG
CACCTAGCTTCAAGCGGCGACGTCCCTCGGATAGAATGTTAAATGGAAGT
CCATTCTTTGAGAAGAGCCACACCTCCATCACGTTTAAGAACCAACCACA
CCTATCGAAAAGAGTAAGGGGCATTCCCCGTGTGCGTGGCTCATAACAGT
TACTGTTCAACAACTAGTCCTATGGCCACACCTATGGCAAGTCAGTTCAT
CAGAAGCTGGCGGCTGCTACCACAGACCCTTCCGACTTAGCCCCGACAAC
TATCAGCTCTTCACAATTCAGCTCATGGCTACAAAAAGATAGTTATTGGA
CCACCCTATGATACAGTTACCATAATCCTTGATGCAATATATTCTGAAAC
TCGAGAAAAACCTCTCGGAGTGACAATAAGAAACGCTTGTTAACAATTTA
TTTTGTTGTGATGTTGACATAAAATATTTGTGATCCGCATTGTAAGAGTA
AAGTGCCACACATTTTCAAATGGTGTTCTGACTCCTTTTGGTGTAGTTTC
AGTAATTAAGATGGTAGGAGCGACATGGTTATACATGTTTCGCGCAAGCT
TAAGATTATCATCATCATCATCATCATATCGGGCAGCTTGCCCGGACTAG
GGTTGCTCTTTCCCTCCAGGCAACACGGTCCGCCATTAGTTGGTCTAGAT
GTTCAGACCTCACTCCTACATCCCCAGCAAGTTGGTCTATGTAGGTCCTT
CGGGGTCGCCCGACACAGGAATGCCCATGAGTTGGAGCCCAGAGTAGGAG
TTCGCTTACAAGCTCTTCTTTGTTTCTGTAGCTATGTCCTGCAAACCGTA
CCCTTCTCTCTCGTATGGTTGATGATACGGATGATAGTGTTCCATACAGT
TCCGCAGATTATCAGTTGTCCCCAAAAGTGGTTAAACAAATGAGTGGGAA
TCAAACCAGCTGTGCCGCGACTTGCAGATATGTTTTCTTGCTCATAAATT
GATATTGCCTTCTATCTATGCTATATATTTGTTCCTATGCTTAAGTAATG
TTTATTTGATTAAGAAGCGAGACATATGAGAAAAATAAGGTAAAGCAGTC
ATTCTCAATTGAGGTGAAGCATGATGCTTTTTCAAGTAGCTAGTGGTAGT
GTAATGCGGCTTCGCTACGGCTAGCGTTTTTCACCAAGCACACCGGGTCA
CGCCTACTCTTCTCGATAAAGTGTATTGAGTTCTTTTACGTGCAGAGGTT
TGACGCTTAGAGCTGCACTATGTAACATTTTGTCGCAAAAATTGAAAATA
TTCTTGTGAACAAATCCTAATACAAATGACATGGACAACCACTTTTCAGC
ATATTCCCATCTGATTCATTAATTCGTCTATTTCTGGCATGTATGGTGTT
TTTAACTGTACAAGAACCAGCTGCAAAAGTATGACACCACCTCAACCTAA
AGCCCAATGTTTGTAAACAAACTTCCTGCACATTGGCAGGACCCCTGGGT
AGGCTAATTACTTAGCGACACTTCAGTGGATCTAGATAATAGCTGATGTT
ATGAAGATCATCTTCTTCAAAAACTCTCATATCTTTTCGGATAAAATATG
TTAGCCAAGTTTGTAGGGAACTGATAAATCGGATTTCCCCCGTTCAAAAC
TGCTAGAACTCTGATTAGGACGTTTGGCAGAAACTGTGGTTAACTATAAT
CAGGCACCCCACTGGGCAGTTGGGGTGATAAGCCTGTGTGGCCACACTGC
CCCAACTGCCAACTGGCTTTGAAAGTTCAGTTTTTAAACTGGTTTATATG
GTGCAATGATGCTGTAACATTCCTTCCTGAATACTGGTATGTCATTCTAC
AATTTATTCCACATACTATGTAAAGAAATGGTAGAAAATTTGACTTCCTG
TATTGACCAAATCTTACATTGTGCGAAGCTCCCTCATACAAGGGACCGCC
GGCTTTACGTCACCATCCGAAATGACATGTCCGAGCTGGAGTCGACCCTA
TGATCGAACTCGGGCCCCAGGATCCACGGAATTTGATCCAGATGGCGAAG
AAGCGGGGTTGCGTTACCGTTTGCGCCACGTAATCAAATAAAAATTACAT
TAGCATAGGTAGAAATATATAGCATAGGTAGAAGGCAACATTAAACTATG
CGTAATAAAATGTATCTGCAATTTGCTCCAAATATCACAATGCGACACCT
AAGTGCTTAACGTACACACTTATCTAGACACCATGATCAATAGACCGATC
CCAAAGCCACGCCCCCTGTTCGATTTCGAACACCTCCGTCAAAAACAGGG
TTTGACGGACCAAACATGGCCGCCGCGGCTAGGTTGAAAATAATGCCACT
GACTTCGGTTTAGCTTTTGTGGCACTGAAACCCTTTCAGAGCGGGCCAAA
TTAGAATACTATGTCTTCTTTGTTGAAGACTGTATCCACCGGGTAGAGTT
GTTTAAGGAGGGGGTAGGTGTAGTTGCGGTGAGAGCGTAATGTTTTCGGT
CAACGTTAAAGCGGTATGCGCCGCATAGCTTTCCCTTGTCGGTGGGCATC
AGCGCCCGGTTTCTGACAAGCAGGCGATGCACGTGTAAAACAGGGTTCAT
ATATCTGTGACAGGGTTCCCACTGTATTGACTGCATGCATAACAGCTGCA
TGGTATTTAGTAACTAAGAATTAAAATGCATCCTTTTACTTCCCTGTTCA
CTTTCAAGTTAACCAGTTTCACACACCAGTAACTGAAGATACAAAACTCT
GCGCTAGCGGACTTTGTAGTAGGTCAGCATGTGGTTCAAGCTTCCTCCCC
TTGAGTGCCCGATCTATTTTCTTTTTAAATTCGTTTTTGTTCTGAGCATG
CATTCAACCAATACAGTGGAAAACCTGTCCCAGATATACGTACCCTGCTT
TACACGTGCCATTTCTGCCCCGCCAACGCTGTTTTTGACGGAGGTGGGCT
GAATTAGAACAGGGGGTTCTATGGGTCTTCTATTCGTTCGATATGGTGTT
CGACAGGATCGGTCTATAGCGCCATTGTATGGACGAAAGACAGATAGATA
TATTCAATAAGGCAAACATGTACCCCCGTGAGTGGATTGAGCCAACTTTA
GGCGTTGGAAATGGACACCAAAATACAATTCAGATTATATTCAACAACAA
CAATGATAGTATTATTCAATTAACACACACATGTACGCGTTTGTGCCGAA
GTATACACCGCTCTTTTGTTATTGGACATCGCACCTTCTAAAATCATTTT
TTAGACTCGAGGTTTTTTACTTAATGCTGACGTGTCCTCTTGGCTATTAA
TTGAATAATATTTGTTGCTGTTAAATAATGTCAAAATGTTCTATTTTGGT
GTCGTACACGTTGTGTTGGAGCACCCTAAGAGCGAGGGGGTCACGGTGGG
CATGGGTAAAACGCGAGCTGTGGTTGCATTGCACTATCTACTAGCGTAAA
GCATTCCCCCTTCCCCCATTATCAACATCCAGAGGATGACCTTTAAACAA
CGACATATGTTTTACCAGGATGCCCGGATGTTGACCTCACCTTGACCCCA
TGGAACCCTGGACATGACCCCACCGCGCAGGTGGTTGTGGGTAGAGGACA
AAAATACCTGCTCCAATCATCCGCAACTTTTTTCTCACTTGAAGTCAAAG
ATGGAGGTAAGTTTAAATCTCCACAAGACCAGTCATAGGCTGAATAGATG
TAATGTTTAATCATAAAGACCGGCAACAGTAGGATTTTTTTGAAAAGCTA
TTTCAGAACTTTAGAACTGGAAATATTTTGGATATGGCAATATTAACTTG
TTTATATTAGCACATATCTATCATGATTTCATACTTTGGGCATTTACGAA
TAGCCGCACAAGCAGTCCTTCATATTTTGGGACCATCAAAAAGTCAAGTT
TTTTTAAAGAAATGGGTGTCTATAATTTGAAAAAAAAATGGTTTTGTGAT
TTTTTTAGGAAAGAAACATGTCAGCACAACGACTCTGACGTATGCTCCTG
CACTACCAAAAACATTTTTTCTTGCTTTTCTCGTTTTTCTTAACTCGTGG
ACAAATTTTCTTATATCAAGAATTTCAAGAATGATTAAGAAAGAAAAAGT
GAAGAATTAGTCTGATTCTTTCCATTGAAATTCTCGCAACGAGGAACACT
TTCCTAATTCTCTGAAGTTAAGAAACTGTTTTTCAAAAAGATTTTCACCC
TCAAGAATTTCTAGAAATTCAAATTTCTTGTTTTTATTGACTTCAATATT
ATTTTTATATATAGAACTTTTTTCTACCCTTTCTTGAAAAATCTTACCTT
AAGAAAAACTTTGCAAGAAAAATTACTTATTACAATAAGAAAAAAAATCT
TACCTCGTGGACAAAATGGTCTTCTTAAACACAGAAAGTTTTCCTCCTTT
TAGAAAATATTTCTGTGTATAAGAAGCTTAAGAAAATGCATTTTCGGTTG
TTTTCGGTATTCAGAAAATCAGTTGAAAATTAAGCTTCATCTTTAACCTT
GAAAATGCTAAGCATTCTATGATCCGTGCATTACCGACTTTTACACCTTT
TCAAACAGGAAGGCTTGTGTTTGCTGACTTGGGCCCAACAAGTCAAGCAG
AGATAGTCCTGAGGTCTCGTGAGATTATCGTGAGAAGCGATGGCGAGTTC
CACATCGGCAGTGAGACGTGCCCGTACCAGGGGAAGGTCACGGTGTCCCT
GTACGGCCGCAAGGACGA Coding sequence (CDS) from alignment at Sc0000747:54..5371- >transcript:BL84063_cuf0 ID=transcript:BL84063_cuf0|Name=transcript:BL84063_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1089bp|location=Sequence derived from alignment at Sc0000747:54..5371- (Branchiostoma lanceolatum)
ATGTCAAGCTGCGCGTTTGCAGTCGGATTTTTGGGTCTTCTGACTGCGGT
TCTATCGCTGATTCAAGGATGCCCGGATGTTGACCTCACCTTGACCCCAT
GGAACCCTGGACATGACCCCACCGCGCAGGTGGTTGTGGGTAGAGGACAA
AAATACCTGCTCCAATCATCCGCAACTTTTTTCTCACTTGAAGTCAAAGA
TGGAGGAAGGCTTGTGTTTGCTGACTTGGGCCCAACAAGTCAAGCAGAGA
TAGTCCTGAGGTCTCGTGAGATTATCGTGAGAAGCGATGGCGAGTTCCAC
ATCGGCAGTGAGACGTGCCCGTACCAGGGGAAGGTCACGGTGTCCCTGTA
CGGCCGCAAGGACATGTCAAGCTGCGCGTTTGCAGTCGGATTTTTGGGTC
TTCTGACTGCGGTTCTATCGCTGATTCAAGGATGCCCGGATGTTGACCTC
ACCTTGACCCCATGGAACCCTGGACATGACCCCACCGCGCAGGTGGTTGT
GGGTAGAGGACAAAAATACCTGCTCCAATCATCCGCAACTTTTTTCTCAC
TTGAAGTCAAAGATGGAGGAAGGCTTGTGTTTGCTGACTTGGGCCCAACA
AGTCAAGCAGAGATAGTCCTGAGGTCTCGTGAGATTATCGTGAGAAGCGA
TGGCGAGTTCCACATCGGCAGTGAGACGTGCCCGTACCAGGGGAAGGTCA
CGGTGTCCCTGTACGGCCGCAAGGACATGTCAAGCTGCGCGTTTGCAGTC
GGATTTTTGGGTCTTCTGACTGCGGTTCTATCGCTGATTCAAGGATGCCC
GGATGTTGACCTCACCTTGACCCCATGGAACCCTGGACATGACCCCACCG
CGCAGGTGGTTGTGGGTAGAGGACAAAAATACCTGCTCCAATCATCCGCA
ACTTTTTTCTCACTTGAAGTCAAAGATGGAGGAAGGCTTGTGTTTGCTGA
CTTGGGCCCAACAAGTCAAGCAGAGATAGTCCTGAGGTCTCGTGAGATTA
TCGTGAGAAGCGATGGCGAGTTCCACATCGGCAGTGAGACGTGCCCGTAC
CAGGGGAAGGTCACGGTGTCCCTGTACGGCCGCAAGGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000747 | genome | Sc0000747:54..5371 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84063_cuf0 |
| Biotype | protein_coding |
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