transcript:BL89548_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL89548_cuf0
Unique Nametranscript:BL89548_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL89548_cuf0

>transcript:BL89548_cuf0-protein ID=transcript:BL89548_cuf0-protein|Name=transcript:BL89548_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=513bp
MVHCIVVGCVSKSDKKEGIGFYSIPKVVTGQGEDHEKLTEERRRLWISAI
SRADTETKNILQSERVCGRHFISGKAAPVWDRHNPDWVPTLNLGRTDYRG
EAAKEKQQKEAGARAKRATGRKKKRGAEQHETPAAAKRTPQRCVRQIDFA
QVEDVPLDVEMADLSLESKEPQDAETRTEELQYAFSSVSVHQESKIAGTQ
TEEFEYMFGAPGYQAPDRDFFKSADKVRFYTGLPTYEVLMIVFDHVAPFV
TRRSKSLDSFQEFMIVLMKLRLNPPFQALAYQFKVSLATVSRIFSTWIVA
LDTRLSCFISWPDREDLWRTMPRCFLHTFGRKVTVIIDCFEVFIAKPTNL
LARAQTFSSYKHHNTIKVLIGITPQGTISFVSEAWGGRTSDKFLTENCGF
LDKLLPGDTVMADRGFTIDESVGLKQGQLVIPAFTKGKAQLDPIDVEKSR
GIANVRIHVERVIGLLRRKYTFLQGTIPTDYLVCRESKVPLVDRIIRVCS
ALVNFCPPIVPFD
Run BLAST on NCBI

mRNA from alignment at Sc0000500:109616..112909+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL89548_cuf0 ID=transcript:BL89548_cuf0|Name=transcript:BL89548_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3294bp|location=Sequence derived from alignment at Sc0000500:109616..112909+ (Branchiostoma lanceolatum)
TTGCTATTCTCGGCTTTCAGTCACGTGACCCGGTCTTAGCAACGGTTGCT
ATCCGCCATCTTTGTGCCCTACAACTGCGTTCCCTACAACTGCGTTGTGA
GTCATGGTGCACTGCATTGTTGTCGGTTGCGTTTCGAAAAGCGACAAGAA
GGAGGGGATTGGTTTTTATTCTATACCTAAGGTGGTTACCGGTCAAGGAG
AGGATCACGAGAAGCTCACTGAAGAACGGAGGAGATTGTGGATTTCGGCA
ATCAGCCGCGCGGACACGGAGACCAAGAACATTCTCCAAAGTGAGCGGGT
TTGTGGTCGCCATTTTATTTCTGGGAAGGCTGCGCCTGTATGGGACAGAC
ACAATCCTGACTGGGTCCCCACGCTGAACCTTGGAAGAACAGACTACAGG
GGTGAGGCGGCGAAAGAAAAGCAACAGAAGGAGGCAGGCGCGAGGGCTAA
AAGGGCTACAGGCCGCAAGAAGAAACGCGGCGCTGAACAACATGAAACTC
CGGCTGCAGCTAAACGGACGCCTCAGCGGTGTGTGCGACAGATCGATTTC
GCCCAGGTTGAAGATGTGCCTCTAGATGTGGAAATGGCTGACCTCTCGTT
GGAAAGCAAAGAGCCACAGGATGCCGAAACACGGACAGAAGAGCTGCAGT
ATGCTTTCAGCAGCGTGTCAGTTCACCAAGAGTCGAAGATTGCTGGAACA
CAGACAGAAGAGTTCGAGTACATGTTTGGTGCGCCAGGTTATCAAGCCCC
CGACAGAGACTTTTTTAAATCAGCTGATAAAGTGAGATTTTACACCGGTC
TGCCTACATATGAAGTCCTTATGATTGTTTTTGATCATGTAGCTCCCTTT
GTTACCCGAAGGAGCAAGAGCCTGGATAGTTTCCAGGAGTTTATGATAGT
TCTTATGAAACTCAGACTTAACCCGCCATTCCAAGCTCTAGCTTACCAGT
TTAAAGTATCGCTTGCCACTGTTTCGCGCATCTTCAGCACGTGGATTGTA
GCATTGGACACCAGGCTATCATGTTTTATTTCTTGGCCTGACAGAGAGGA
TTTGTGGAGGACTATGCCAAGGTGCTTTCTGCACACATTTGGCAGGAAAG
TGACTGTAATCATTGACTGTTTCGAGGTATTCATCGCCAAACCAACCAAC
CTCCTGGCCCGTGCACAAACATTCTCAAGCTACAAGCATCACAATACTAT
CAAAGTTCTCATTGGTATCACACCACAAGGGACAATCTCTTTCGTGTCAG
AAGCTTGGGGTGGCCGAACGTCAGACAAGTTCCTGACAGAGAACTGTGGA
TTCCTAGACAAACTGTTGCCAGGTGACACAGTCATGGCAGATAGGGGATT
TACCATTGATGAAAGTGTTGGTCTGAAGCAGGGACAGCTTGTAATTCCTG
CTTTCACAAAGGGGAAGGCACAGCTAGATCCAATTGACGTAGAGAAATCA
AGGGGTATTGCCAATGTGCGAATCCATGTGGAAAGAGTTATTGGTCTGTT
GCGTAGGAAGTATACTTTCTTACAGGGAACTATTCCCACAGATTACTTAG
TGTGTCGTGAGTCCAAAGTACCGTTGGTTGACAGAATCATCAGAGTCTGC
TCAGCACTTGTAAATTTCTGTCCGCCAATTGTACCTTTTGATTAGTTTCC
ATTCTATCCATTGTTTAAGGCAGACAGAAAAGTATGCTGCATCAGTCATA
ACATGCATAGCAGTCATTAGTGCCTGCTTGGTAAGTCTTGCCAACAAAAA
TCTAGAATGCTGAGGGAAACAAATAAGACCACTTTGCTAGCAACAACATA
AAGCAATTATTTTGTGACCTCCTTCCATCAGCATTGACAAGGTTATGGTA
TATATTATGAACCTGAAGTGAATAAATGCCTACTCAGAACAGTTTTTGTT
ACAGAACTCATCATTTATTTGAAGACTAGAACAAGTTAACTCAATGCTAG
ATACTCAACTTCAGTACAGTAAAAGGAAAGGTAAAACAAGCTGCTGAAAT
CAATAACATACTTGTCCTCTGTGGTTCAATTTGCTTGAACATTATAATTA
CATGTAGGTCAAAATGTTCAAACCATACCACTGCATCAATGTTAAAGTTT
GACTGGTATATCCACATATGGCTCTCTCATGTCAAACTGTTAAGAAGATA
CTTGCCAGTACCCCATGATCTGACATGAAAATCTAAAAATAGCATTATTA
AGTCATTAGAATGAAATAGCATATAAGCATACTTCAAGCAATAATATACA
GATAACACAGCTAAACTTGTCCTCTGTGGTTCAATTTGCTTAAACATTAT
AATTACATGTAGGTCAAATGTTCAAACCATAACACTGCATCAATGTTAAA
GTTTGGTATATCTACATATATCTATGTAAGACAGAAGTATATTTATACAA
AAAGGGCTGGGTCTTCCAAAGTCGGGAACATGCTGATTGACCCTTCCTTG
AGACACTTCAATAAGTGGGGACGCATCCTAGGTATGTCAAACGTTACAGT
GCTTGGATCTGTAGCGTAAACTAAACATACAGCAAATGCTATTGAAAATA
CACCACAGTCACTACCGTTTGACTGTTGTTGCACAGGAACATAATCTAAA
GAAACAAGATTCCCACCAATTAAGTCATTGGTCTGTTCTTTCACCTCTTC
GCTAACCGCATCATGATATAAACTATCATACAGCTTTACCCTACCAGGTA
GGCAATCTATTGTACTCACACACACCCAGTGACCTTGGCCTGTATGCAAT
ATTTGTATACATTCAGAAGATACCACATCAAAGTTTCGGGCAGGCCCTAG
TGATGGGCGTTGTAGTCCTTCGACTCCTGGATTTACTTGCCTTACTAGAA
CTTGAGAACAGTGTACTATATCACCTGTAAGCCAACCATTGGGATCTATT
ATGATATCATAATCTGACTCACTGAGATTTGACAGACTGCGGTACTTATC
AACTGACTCTGTAGTCTCATCAGTGATAACAACATCTTCCTCATCACAAC
TTGTGTTACATGTAGAAGGAGAATCAACAGGCTTTGTTTTCTTAGTACAA
GAATTAGGAGTACTAGTTGATGGCTTCTTCTTCCTACATTGCTTACACTG
CCATGTTGTTTTAGCATTATTGGGCATTCTTTTCATGTCCAAACAACTAA
GGTGGAAATACTTCCCCTGATCACAGTTAGCATTGTGGCATTCAAGGTAC
CTGTCTTCCTTACATGGTTTGGCATTACACATACATACAGTGGTGCAAAT
CAAGGCAGCCTGGCTTACTGCTGATTGTTCTTGCTGCTTCTTAG

Coding sequence (CDS) from alignment at Sc0000500:109616..112909+

>transcript:BL89548_cuf0 ID=transcript:BL89548_cuf0|Name=transcript:BL89548_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1542bp|location=Sequence derived from alignment at Sc0000500:109616..112909+ (Branchiostoma lanceolatum)
ATGGTGCACTGCATTGTTGTCGGTTGCGTTTCGAAAAGCGACAAGAAGGA
GGGGATTGGTTTTTATTCTATACCTAAGGTGGTTACCGGTCAAGGAGAGG
ATCACGAGAAGCTCACTGAAGAACGGAGGAGATTGTGGATTTCGGCAATC
AGCCGCGCGGACACGGAGACCAAGAACATTCTCCAAAGTGAGCGGGTTTG
TGGTCGCCATTTTATTTCTGGGAAGGCTGCGCCTGTATGGGACAGACACA
ATCCTGACTGGGTCCCCACGCTGAACCTTGGAAGAACAGACTACAGGGGT
GAGGCGGCGAAAGAAAAGCAACAGAAGGAGGCAGGCGCGAGGGCTAAAAG
GGCTACAGGCCGCAAGAAGAAACGCGGCGCTGAACAACATGAAACTCCGG
CTGCAGCTAAACGGACGCCTCAGCGGTGTGTGCGACAGATCGATTTCGCC
CAGGTTGAAGATGTGCCTCTAGATGTGGAAATGGCTGACCTCTCGTTGGA
AAGCAAAGAGCCACAGGATGCCGAAACACGGACAGAAGAGCTGCAGTATG
CTTTCAGCAGCGTGTCAGTTCACCAAGAGTCGAAGATTGCTGGAACACAG
ACAGAAGAGTTCGAGTACATGTTTGGTGCGCCAGGTTATCAAGCCCCCGA
CAGAGACTTTTTTAAATCAGCTGATAAAGTGAGATTTTACACCGGTCTGC
CTACATATGAAGTCCTTATGATTGTTTTTGATCATGTAGCTCCCTTTGTT
ACCCGAAGGAGCAAGAGCCTGGATAGTTTCCAGGAGTTTATGATAGTTCT
TATGAAACTCAGACTTAACCCGCCATTCCAAGCTCTAGCTTACCAGTTTA
AAGTATCGCTTGCCACTGTTTCGCGCATCTTCAGCACGTGGATTGTAGCA
TTGGACACCAGGCTATCATGTTTTATTTCTTGGCCTGACAGAGAGGATTT
GTGGAGGACTATGCCAAGGTGCTTTCTGCACACATTTGGCAGGAAAGTGA
CTGTAATCATTGACTGTTTCGAGGTATTCATCGCCAAACCAACCAACCTC
CTGGCCCGTGCACAAACATTCTCAAGCTACAAGCATCACAATACTATCAA
AGTTCTCATTGGTATCACACCACAAGGGACAATCTCTTTCGTGTCAGAAG
CTTGGGGTGGCCGAACGTCAGACAAGTTCCTGACAGAGAACTGTGGATTC
CTAGACAAACTGTTGCCAGGTGACACAGTCATGGCAGATAGGGGATTTAC
CATTGATGAAAGTGTTGGTCTGAAGCAGGGACAGCTTGTAATTCCTGCTT
TCACAAAGGGGAAGGCACAGCTAGATCCAATTGACGTAGAGAAATCAAGG
GGTATTGCCAATGTGCGAATCCATGTGGAAAGAGTTATTGGTCTGTTGCG
TAGGAAGTATACTTTCTTACAGGGAACTATTCCCACAGATTACTTAGTGT
GTCGTGAGTCCAAAGTACCGTTGGTTGACAGAATCATCAGAGTCTGCTCA
GCACTTGTAAATTTCTGTCCGCCAATTGTACCTTTTGATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL89548gene:BL89548Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL89548_cuf0-E1BL89548_cuf0-E1-1564476830-474910Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL89548_cuf0transcript:BL89548_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000500genomeSc0000500:109616..112909 +
Properties
Property NameValue
Transcript idBL89548_cuf0
Biotypeprotein_coding