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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90880_cuf1 >transcript:BL90880_cuf1-protein ID=transcript:BL90880_cuf1-protein|Name=transcript:BL90880_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=359bp
EVNTRFWRALQKFKLLLPQPKRARLSSVTVIPTRPLGGARELPKRQATIT
EIFSSRGRKDEETAATTSGSNSSLVNGTEHCYEKASDPNRLDSSIRLSPE
SANQQIIQKTSDKNFSTAHDRTSTDNSKGKERSDEEEYGYSLTDGSQNDQ
PLSPLKYTQDSEGNMKLNTPFNLPETDTNDDVFTKNQTVKNSMAKETLHS
KNIQKPQNVTKSCEHVKRQETRVEKTLQLTERHEVLSQPMYTLDTQGDLK
AKFGTEHDCPQTLDDQNVGLREKPILDTMPCTEALSPLQYTLDSQGELMY
NDNHPCDGARKGHSEESHSLRCGHSDVDIEDDSLLSEPDVLSQLKYTLDS
EGELKCKGN Run BLAST on NCBI mRNA from alignment at Sc0000480:9042..12291+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90880_cuf1 ID=transcript:BL90880_cuf1|Name=transcript:BL90880_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3250bp|location=Sequence derived from alignment at Sc0000480:9042..12291+ (Branchiostoma lanceolatum)
CGGAAGTGAACACGCGGTTTTGGCGGGCTCTTCAAAAATTTAAGGTTGGT
CTAAATCTACGTCCACAATCGGCACACTATTTATCTAGAGCAGTTTGTAC
AAAACACACTTTTCTTTAACTACCACTGACTATTTATAGTTTGCTGCTTG
TTTGTCGTGTAAGGTGGTCTTGATCTGTCCTGGCCCCATGCCCCCCTCCC
CACAAAAGATGACCACCCTTCCTTTTAGCAAGGAGGTTATATACTAGTGG
TCTATATAGCCTCCTTGCTTATAGTCATAGATCTTTGATAGATTCCTTGG
TCGTGTCTAGAAGAAATATTATTCAGACCTTATATGAATGAATGAATGAA
GGGAATGAATTGATGAATAATTGAATGAATGATTCGAAGTTGTTTCAATA
CTTGTTGTTGTCTCCAGATTGCTATGGGAAAACGAAAAGAACCGACCCAC
AAGCCTGTTCCTTGTGGGGTTTGGGTTTCCAAGAAGAGGCAGAAACAGGT
TTGTAGTAACTAAAAGTACTCAAACTGTACATAGTGATACATCTACATTT
TGATACCCCCAAATAGCCCCTTCAGGGGCAAAGTAAGGGGGGAGTTAAGG
ACACGGGCTAAGGCGGGCAGGCCTCCAGCCGGAACAGAACGACTCAACGG
TGGGAGCCGTCGCAACCGTGCCAGGCAGCAGGGTGTTCCACTGTGGGATA
GTACGGGGAAAGAAGGAGTGTTTATATGTATCGGCACTTGCGTATATACA
TATACTAGTAACAACTTTGCAACATGGCAACTGTGAAATCTGCTGAAATA
AAACCACTGCAAACATTTCAAGATTTACAATACTTGTATAGTACTTGTAG
TTATACAGTCTTTGGTGGAATTTCACTTACTACTCAGTAGTAGTAATTTC
CTATGTACTGTCCCATAGATATAAGTCAGCAAGCTAGTAATAATGCATCA
GTACTTATCATTCATAGTTTTGGGATAATGACAACGCTGAGATGGAATTC
GACCGGTTTCAACTTTATTCAGTCATTTTCAAGAATGCATCAGTACTTAG
TTATGCACTATGAAGGCTGTGCAGTTCAACATTGAACTTGTCACATGTCA
CCTTGAGCTTAAATCTCAGCCACCTTCTGCTCAAGTTCCTTTGTTTTTGC
TATAGAATTATTCCAACAATTTCTTCTTTACCTTCAGCTGTTACTGCCCC
AACCTAAGCGTGCCAGGCTGTCATCTGTGACTGTTATACCAACACGGCCG
CTAGGCGGCGCAAGGGAACTGCCCAAACGGCAGGCCACGATAACAGAGAT
TTTCAGCTCAAGGGGAAGAAAAGATGAAGAAACTGCAGCAACTACATCCG
GATCCAATTCAAGTCTAGTTAATGGTTTGTTTGTTTGTTTGTTTGTTTTC
TTGTTTCACAAAACCAGTAAACCACCTTTAGGTGTAACACACAAGTTTTG
TACAGTAAGTACAAGCTGCGTAAGAACAGACTGACAGGTTTTCATTTGAA
CCACTCACAGTCACAATGGGATGGACTCCTACTAGTACTCTTTTTGAAAA
GAGTAGGAGTGATTAAATCCCCACAAACTTAAAGGCATTTACAGCACTAG
AACAGCTTACAAACTCTAGCAATGTTGCTGCATAACCAAGATTCATTCAG
TATTCAGACTTTATGATTGGTTGTTATGAACAGTGACATCAAAAGTCTTT
TAAGAACAACTTTTCTTACCTACAAATTACCCCCATGCTACAATCATGCA
CACACAAATCAAGCAACATCTTAACAATGCGGGTAATTTTGTTTGCCCTG
GCTATTTTCATGTTATACAGGTACAGAACACTGCTACGAGAAAGCTTCAG
ATCCCAACCGACTAGACTCTAGTATACGGTTGTCACCGGAGTCAGCCAAT
CAACAAATCATACAGAAGACTTCTGACAAGAACTTCAGCACTGCCCATGA
TAGGACTTCAACAGATAACTCGAAAGGCAAGGAACGGTCAGATGAAGAGG
AATACGGCTATAGTTTGACCGACGGCTCGCAAAATGACCAACCTCTTTCC
CCACTCAAGTACACGCAAGATTCTGAAGGAAACATGAAATTAAACACTCC
ATTCAACTTACCAGAAACTGACACCAATGATGACGTTTTCACCAAAAATC
AGACTGTAAAGAACTCTATGGCAAAAGAAACACTACATTCAAAGAACATA
CAGAAACCTCAAAATGTAACCAAGAGTTGTGAGCATGTAAAGCGCCAGGA
AACTAGAGTGGAAAAAACGCTGCAACTGACTGAAAGGCATGAAGTTTTGT
CACAACCGATGTATACTCTGGACACTCAAGGAGACCTGAAGGCCAAGTTC
GGGACTGAACACGACTGTCCTCAAACGCTAGATGACCAAAATGTAGGTCT
TCGTGAAAAACCAATATTGGACACCATGCCATGTACAGAGGCATTGTCAC
CACTGCAGTACACATTAGACAGTCAGGGAGAGCTTATGTACAATGACAAC
CACCCATGTGATGGTGCAAGAAAAGGGCACTCAGAAGAGAGCCATTCTCT
AAGGTGCGGACACAGCGATGTGGACATTGAAGATGATTCTCTGCTCTCAG
AGCCAGACGTTCTATCACAGCTTAAGTACACATTAGACTCTGAAGGAGAA
CTTAAGTGCAAAGGAAACTAGCAACAAAGTTCTAGCTCTAATCGAAAAAT
CTGAGTTGGACACCATGTAATGTACAGGCTCTAAGTCACTCTGAGGTATT
GTCACCTCTGCACTACAAGTTAGATAGTCTGCAGTACATGTTTAAACAGC
TAGGGAGAGCTTATATACAGCTTACCAGTAGTAACACTAGTACTGACAGC
CATCATAACCCAAATGATCCAATCCTTCCTCTAGGAAAAGTTTTGGATGC
AGATTATAGCTCCCCCACCCATAATGAAGAATTGAATGATTCACAATCAA
TTATTTTACAACTACTGTTTGCTAAGTCAGGTACAATCTCATAATCCACT
ATGGTTGTACAATGTACAGTAAAACTTGAAAAGTTGGCAGTGGTTTTATT
TTTGTGGTGATCTCTCCACAGAGAATATGCATTTTTTTTAAATATCACTG
TACTACAGAATTTATTCAATTGTTTAACTGCAAACTTAAAAGCCCGCAAA
AATCTTCTTTCCCCTTCTATTGCAAAATTAAGTTGCCGCAAAAATAGATT
AATTTAAAGTACTTGGATTTGGTTGCACAACTTCCGCCAGCTCACCCACC
Coding sequence (CDS) from alignment at Sc0000480:9042..12291+ >transcript:BL90880_cuf1 ID=transcript:BL90880_cuf1|Name=transcript:BL90880_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3240bp|location=Sequence derived from alignment at Sc0000480:9042..12291+ (Branchiostoma lanceolatum)
GAAGTGAACACGCGGTTTTGGCGGGCTCTTCAAAAATTTAAGCTGTTACT
GCCCCAACCTAAGCGTGCCAGGCTGTCATCTGTGACTGTTATACCAACAC
GGCCGCTAGGCGGCGCAAGGGAACTGCCCAAACGGCAGGCCACGATAACA
GAGATTTTCAGCTCAAGGGGAAGAAAAGATGAAGAAACTGCAGCAACTAC
ATCCGGATCCAATTCAAGTCTAGTTAATGGTACAGAACACTGCTACGAGA
AAGCTTCAGATCCCAACCGACTAGACTCTAGTATACGGTTGTCACCGGAG
TCAGCCAATCAACAAATCATACAGAAGACTTCTGACAAGAACTTCAGCAC
TGCCCATGATAGGACTTCAACAGATAACTCGAAAGGCAAGGAACGGTCAG
ATGAAGAGGAATACGGCTATAGTTTGACCGACGGCTCGCAAAATGACCAA
CCTCTTTCCCCACTCAAGTACACGCAAGATTCTGAAGGAAACATGAAATT
AAACACTCCATTCAACTTACCAGAAACTGACACCAATGATGACGTTTTCA
CCAAAAATCAGACTGTAAAGAACTCTATGGCAAAAGAAACACTACATTCA
AAGAACATACAGAAACCTCAAAATGTAACCAAGAGTTGTGAGCATGTAAA
GCGCCAGGAAACTAGAGTGGAAAAAACGCTGCAACTGACTGAAAGGCATG
AAGTTTTGTCACAACCGATGTATACTCTGGACACTCAAGGAGACCTGAAG
GCCAAGTTCGGGACTGAACACGACTGTCCTCAAACGCTAGATGACCAAAA
TGTAGGTCTTCGTGAAAAACCAATATTGGACACCATGCCATGTACAGAGG
CATTGTCACCACTGCAGTACACATTAGACAGTCAGGGAGAGCTTATGTAC
AATGACAACCACCCATGTGATGGTGCAAGAAAAGGGCACTCAGAAGAGAG
CCATTCTCTAAGGTGCGGACACAGCGATGTGGACATTGAAGATGATTCTC
TGCTCTCAGAGCCAGACGTTCTATCACAGCTTAAGTACACATTAGACTCT
GAAGGAGAACTTAAGTGCAAAGGAAACTAGGAAGTGAACACGCGGTTTTG
GCGGGCTCTTCAAAAATTTAAGCTGTTACTGCCCCAACCTAAGCGTGCCA
GGCTGTCATCTGTGACTGTTATACCAACACGGCCGCTAGGCGGCGCAAGG
GAACTGCCCAAACGGCAGGCCACGATAACAGAGATTTTCAGCTCAAGGGG
AAGAAAAGATGAAGAAACTGCAGCAACTACATCCGGATCCAATTCAAGTC
TAGTTAATGGTACAGAACACTGCTACGAGAAAGCTTCAGATCCCAACCGA
CTAGACTCTAGTATACGGTTGTCACCGGAGTCAGCCAATCAACAAATCAT
ACAGAAGACTTCTGACAAGAACTTCAGCACTGCCCATGATAGGACTTCAA
CAGATAACTCGAAAGGCAAGGAACGGTCAGATGAAGAGGAATACGGCTAT
AGTTTGACCGACGGCTCGCAAAATGACCAACCTCTTTCCCCACTCAAGTA
CACGCAAGATTCTGAAGGAAACATGAAATTAAACACTCCATTCAACTTAC
CAGAAACTGACACCAATGATGACGTTTTCACCAAAAATCAGACTGTAAAG
AACTCTATGGCAAAAGAAACACTACATTCAAAGAACATACAGAAACCTCA
AAATGTAACCAAGAGTTGTGAGCATGTAAAGCGCCAGGAAACTAGAGTGG
AAAAAACGCTGCAACTGACTGAAAGGCATGAAGTTTTGTCACAACCGATG
TATACTCTGGACACTCAAGGAGACCTGAAGGCCAAGTTCGGGACTGAACA
CGACTGTCCTCAAACGCTAGATGACCAAAATGTAGGTCTTCGTGAAAAAC
CAATATTGGACACCATGCCATGTACAGAGGCATTGTCACCACTGCAGTAC
ACATTAGACAGTCAGGGAGAGCTTATGTACAATGACAACCACCCATGTGA
TGGTGCAAGAAAAGGGCACTCAGAAGAGAGCCATTCTCTAAGGTGCGGAC
ACAGCGATGTGGACATTGAAGATGATTCTCTGCTCTCAGAGCCAGACGTT
CTATCACAGCTTAAGTACACATTAGACTCTGAAGGAGAACTTAAGTGCAA
AGGAAACTAGGAAGTGAACACGCGGTTTTGGCGGGCTCTTCAAAAATTTA
AGCTGTTACTGCCCCAACCTAAGCGTGCCAGGCTGTCATCTGTGACTGTT
ATACCAACACGGCCGCTAGGCGGCGCAAGGGAACTGCCCAAACGGCAGGC
CACGATAACAGAGATTTTCAGCTCAAGGGGAAGAAAAGATGAAGAAACTG
CAGCAACTACATCCGGATCCAATTCAAGTCTAGTTAATGGTACAGAACAC
TGCTACGAGAAAGCTTCAGATCCCAACCGACTAGACTCTAGTATACGGTT
GTCACCGGAGTCAGCCAATCAACAAATCATACAGAAGACTTCTGACAAGA
ACTTCAGCACTGCCCATGATAGGACTTCAACAGATAACTCGAAAGGCAAG
GAACGGTCAGATGAAGAGGAATACGGCTATAGTTTGACCGACGGCTCGCA
AAATGACCAACCTCTTTCCCCACTCAAGTACACGCAAGATTCTGAAGGAA
ACATGAAATTAAACACTCCATTCAACTTACCAGAAACTGACACCAATGAT
GACGTTTTCACCAAAAATCAGACTGTAAAGAACTCTATGGCAAAAGAAAC
ACTACATTCAAAGAACATACAGAAACCTCAAAATGTAACCAAGAGTTGTG
AGCATGTAAAGCGCCAGGAAACTAGAGTGGAAAAAACGCTGCAACTGACT
GAAAGGCATGAAGTTTTGTCACAACCGATGTATACTCTGGACACTCAAGG
AGACCTGAAGGCCAAGTTCGGGACTGAACACGACTGTCCTCAAACGCTAG
ATGACCAAAATGTAGGTCTTCGTGAAAAACCAATATTGGACACCATGCCA
TGTACAGAGGCATTGTCACCACTGCAGTACACATTAGACAGTCAGGGAGA
GCTTATGTACAATGACAACCACCCATGTGATGGTGCAAGAAAAGGGCACT
CAGAAGAGAGCCATTCTCTAAGGTGCGGACACAGCGATGTGGACATTGAA
GATGATTCTCTGCTCTCAGAGCCAGACGTTCTATCACAGCTTAAGTACAC
ATTAGACTCTGAAGGAGAACTTAAGTGCAAAGGAAACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000480 | genome | Sc0000480:9042..12291 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90880_cuf1 |
| Biotype | protein_coding |
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