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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL83175_cuf0 >transcript:BL83175_cuf0-protein ID=transcript:BL83175_cuf0-protein|Name=transcript:BL83175_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=723bp
GNNLSQVIKDPTRGQAMLDLIITNLDKHYKTPQVSSPLGLSDHNTVLWEP
LTTRKENFTKRKTLRPIRDSDRRAFGQWICSQSWDEVYASPTCASKATTF
YTVMEDAINKYFPTKQVTMHNKDKPWLKPEIKDMIRRRQKAFSHNKTTLW
KYLRNKVNREVKKARKSFYQDRVQNLKAENPADWYKEIKTILNIQQTELT
LTIPGHDDADSSFISNHINKKFAGVAQGRPPLDPELLPAYRPVQSCPPEV
NIWDTYNRLRRLKAGKASGPDQLSARILKEFAFEISYPVTDIMNASFNEG
YVPQVWKDATVVPLPKSHPPSVDKLRPVSLTSQLAKVAESFVTKWILEDV
SASLDQQQFGCLKGRSTTLYLVSLLDFLCRESEKVKNICTMVMTDFSKAF
DRIDHTLAIQKLLRLGVRGSLIQWVCDFLSHRRQRVRYGGHLSDWEVLTC
SVPQGTLLGPLIFLVVFDDAMRDTLIHHWKYVDDLSMTESRHYLKPSLMQ
NELDSFSGWCGDNHMLLNPDKCKVITFCFMKCPPPPPTLTINGSPLEVVP
VTCLLGVWLQRDLKWETQVTRMVGKANGRLFFLRKLKHFNLPTEDLVTIF
TSFVRPLLEYCAPVWHPGLTCAQSDKLEAVQRRAVRTILGRRFTSYKQAR
KDLNLPLLSDRRQKLCLKFGTQLEAHSSSMLPPKGSDCHDRPTRNRDKYR
PIKCRTDRLKNSPISYIVRLLNA Run BLAST on NCBI mRNA from alignment at Sc0000365:155788..158216- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL83175_cuf0 ID=transcript:BL83175_cuf0|Name=transcript:BL83175_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2429bp|location=Sequence derived from alignment at Sc0000365:155788..158216- (Branchiostoma lanceolatum)
ACGGAAACAACTTGTCCCAGGTCATCAAAGACCCAACAAGAGGACAGGCA
ATGCTAGACCTGATCATTACCAACCTGGACAAACACTACAAAACACCCCA
AGTAAGCAGCCCCCTGGGCCTGAGCGATCACAACACAGTTTTGTGGGAGC
CGCTGACGACAAGGAAAGAGAACTTTACCAAGCGCAAAACACTGAGACCT
ATCCGTGACTCCGACCGCAGGGCCTTTGGCCAATGGATATGTTCTCAATC
TTGGGACGAAGTTTACGCATCCCCAACCTGTGCCAGCAAGGCTACGACCT
TCTACACAGTCATGGAGGACGCTATAAACAAATACTTTCCAACCAAGCAG
GTAACAATGCACAACAAGGACAAACCGTGGTTAAAACCGGAAATTAAGGA
CATGATTCGTCGACGACAAAAAGCATTCTCACACAACAAGACGACGCTGT
GGAAATACCTGCGAAACAAGGTGAACAGAGAAGTCAAGAAAGCTCGTAAG
TCTTTCTACCAGGACAGAGTACAAAACCTTAAAGCAGAAAATCCGGCGGA
TTGGTACAAAGAAATAAAGACCATCCTGAATATTCAGCAGACAGAACTCA
CACTCACTATCCCTGGTCATGACGATGCAGACAGCAGTTTCATCTCAAAC
CACATCAACAAAAAGTTTGCAGGGGTAGCTCAGGGAAGACCGCCACTGGA
TCCGGAACTGTTACCAGCATACAGGCCCGTACAGTCATGCCCACCTGAGG
TGAACATATGGGATACCTACAACCGTCTGCGCAGACTGAAAGCCGGAAAG
GCGTCAGGGCCTGATCAGTTGAGCGCTAGGATATTGAAAGAATTTGCTTT
TGAAATAAGTTACCCGGTCACAGATATTATGAATGCTTCTTTCAATGAAG
GGTACGTCCCACAAGTATGGAAAGACGCCACAGTCGTGCCCTTACCCAAA
TCACATCCCCCATCAGTCGACAAACTGAGACCAGTTTCTCTTACCTCTCA
ACTCGCCAAGGTAGCGGAATCCTTCGTCACTAAATGGATCTTAGAAGATG
TAAGTGCATCCCTAGACCAACAGCAGTTTGGTTGCTTGAAAGGTCGCTCT
ACAACACTGTACCTAGTCAGTTTGTTAGACTTTCTCTGCAGGGAATCGGA
AAAGGTCAAGAACATTTGCACAATGGTAATGACAGACTTTTCGAAAGCAT
TCGATAGGATAGACCATACGTTGGCCATCCAGAAGTTATTACGACTTGGT
GTGAGGGGGAGTCTAATCCAGTGGGTCTGCGACTTTCTTAGCCATCGACG
GCAAAGAGTTCGTTATGGAGGGCATCTCTCGGACTGGGAAGTACTTACCT
GTTCAGTGCCACAAGGAACACTGCTGGGCCCGTTGATTTTCCTCGTAGTT
TTCGATGATGCGATGAGGGACACGCTGATTCATCACTGGAAATATGTTGA
TGATCTGTCTATGACTGAATCGCGTCACTACCTCAAGCCGTCGTTAATGC
AGAACGAGCTGGACAGTTTCTCTGGATGGTGTGGTGACAACCATATGTTA
CTCAACCCAGACAAGTGTAAAGTCATCACTTTTTGCTTTATGAAATGCCC
ACCCCCACCACCAACACTCACAATAAATGGATCCCCCCTTGAGGTTGTGC
CAGTCACGTGCCTGTTGGGAGTGTGGCTGCAGAGAGACTTGAAGTGGGAG
ACACAGGTTACCAGAATGGTAGGGAAAGCTAACGGACGCCTTTTCTTCTT
GCGGAAACTTAAACATTTCAACCTTCCCACCGAGGACCTTGTCACCATAT
TTACATCCTTTGTACGACCACTACTGGAATACTGCGCGCCAGTCTGGCAT
CCGGGGCTCACCTGTGCACAGTCGGACAAGCTCGAAGCAGTTCAACGGAG
AGCAGTTCGGACAATACTCGGAAGGCGGTTTACCAGCTATAAACAAGCCA
GGAAAGACTTAAACCTGCCATTGCTCTCAGACCGCAGGCAGAAACTGTGT
CTGAAGTTCGGAACTCAGTTAGAAGCACATAGTTCATCAATGCTGCCACC
AAAGGGATCTGACTGTCACGATAGACCCACTAGAAACAGGGACAAATATC
GACCTATCAAATGCAGAACAGACAGACTTAAGAACTCTCCCATATCCTAC
ATTGTTCGACTTCTTAATGCTTAACTTCTTATATATTACCGAGGCTTTTA
AAGTGTATGCTCATTTTGTAAAAAAAAAATACTAGAAGTATATTTTAGAT
TCTGCTAATGCAAAACCAATTGTCTGTTTATCACGGACTTTTATATAATA
ATGTTGCCATGTGTTTATGTAATAATGTTGCCATGTTATACAGAAATGAA
TTTTAAACATTGTATAATCCGCAATTCAGCCGAATTGGCTGCGAGGGATT
TATTTTTAATAAACCATTCATCATCATCA Coding sequence (CDS) from alignment at Sc0000365:155788..158216- >transcript:BL83175_cuf0 ID=transcript:BL83175_cuf0|Name=transcript:BL83175_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2172bp|location=Sequence derived from alignment at Sc0000365:155788..158216- (Branchiostoma lanceolatum)
GGAAACAACTTGTCCCAGGTCATCAAAGACCCAACAAGAGGACAGGCAAT
GCTAGACCTGATCATTACCAACCTGGACAAACACTACAAAACACCCCAAG
TAAGCAGCCCCCTGGGCCTGAGCGATCACAACACAGTTTTGTGGGAGCCG
CTGACGACAAGGAAAGAGAACTTTACCAAGCGCAAAACACTGAGACCTAT
CCGTGACTCCGACCGCAGGGCCTTTGGCCAATGGATATGTTCTCAATCTT
GGGACGAAGTTTACGCATCCCCAACCTGTGCCAGCAAGGCTACGACCTTC
TACACAGTCATGGAGGACGCTATAAACAAATACTTTCCAACCAAGCAGGT
AACAATGCACAACAAGGACAAACCGTGGTTAAAACCGGAAATTAAGGACA
TGATTCGTCGACGACAAAAAGCATTCTCACACAACAAGACGACGCTGTGG
AAATACCTGCGAAACAAGGTGAACAGAGAAGTCAAGAAAGCTCGTAAGTC
TTTCTACCAGGACAGAGTACAAAACCTTAAAGCAGAAAATCCGGCGGATT
GGTACAAAGAAATAAAGACCATCCTGAATATTCAGCAGACAGAACTCACA
CTCACTATCCCTGGTCATGACGATGCAGACAGCAGTTTCATCTCAAACCA
CATCAACAAAAAGTTTGCAGGGGTAGCTCAGGGAAGACCGCCACTGGATC
CGGAACTGTTACCAGCATACAGGCCCGTACAGTCATGCCCACCTGAGGTG
AACATATGGGATACCTACAACCGTCTGCGCAGACTGAAAGCCGGAAAGGC
GTCAGGGCCTGATCAGTTGAGCGCTAGGATATTGAAAGAATTTGCTTTTG
AAATAAGTTACCCGGTCACAGATATTATGAATGCTTCTTTCAATGAAGGG
TACGTCCCACAAGTATGGAAAGACGCCACAGTCGTGCCCTTACCCAAATC
ACATCCCCCATCAGTCGACAAACTGAGACCAGTTTCTCTTACCTCTCAAC
TCGCCAAGGTAGCGGAATCCTTCGTCACTAAATGGATCTTAGAAGATGTA
AGTGCATCCCTAGACCAACAGCAGTTTGGTTGCTTGAAAGGTCGCTCTAC
AACACTGTACCTAGTCAGTTTGTTAGACTTTCTCTGCAGGGAATCGGAAA
AGGTCAAGAACATTTGCACAATGGTAATGACAGACTTTTCGAAAGCATTC
GATAGGATAGACCATACGTTGGCCATCCAGAAGTTATTACGACTTGGTGT
GAGGGGGAGTCTAATCCAGTGGGTCTGCGACTTTCTTAGCCATCGACGGC
AAAGAGTTCGTTATGGAGGGCATCTCTCGGACTGGGAAGTACTTACCTGT
TCAGTGCCACAAGGAACACTGCTGGGCCCGTTGATTTTCCTCGTAGTTTT
CGATGATGCGATGAGGGACACGCTGATTCATCACTGGAAATATGTTGATG
ATCTGTCTATGACTGAATCGCGTCACTACCTCAAGCCGTCGTTAATGCAG
AACGAGCTGGACAGTTTCTCTGGATGGTGTGGTGACAACCATATGTTACT
CAACCCAGACAAGTGTAAAGTCATCACTTTTTGCTTTATGAAATGCCCAC
CCCCACCACCAACACTCACAATAAATGGATCCCCCCTTGAGGTTGTGCCA
GTCACGTGCCTGTTGGGAGTGTGGCTGCAGAGAGACTTGAAGTGGGAGAC
ACAGGTTACCAGAATGGTAGGGAAAGCTAACGGACGCCTTTTCTTCTTGC
GGAAACTTAAACATTTCAACCTTCCCACCGAGGACCTTGTCACCATATTT
ACATCCTTTGTACGACCACTACTGGAATACTGCGCGCCAGTCTGGCATCC
GGGGCTCACCTGTGCACAGTCGGACAAGCTCGAAGCAGTTCAACGGAGAG
CAGTTCGGACAATACTCGGAAGGCGGTTTACCAGCTATAAACAAGCCAGG
AAAGACTTAAACCTGCCATTGCTCTCAGACCGCAGGCAGAAACTGTGTCT
GAAGTTCGGAACTCAGTTAGAAGCACATAGTTCATCAATGCTGCCACCAA
AGGGATCTGACTGTCACGATAGACCCACTAGAAACAGGGACAAATATCGA
CCTATCAAATGCAGAACAGACAGACTTAAGAACTCTCCCATATCCTACAT
TGTTCGACTTCTTAATGCTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000365 | genome | Sc0000365:155788..158216 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL83175_cuf0 |
| Biotype | protein_coding |
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