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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96791_cuf9 >transcript:BL96791_cuf9-protein ID=transcript:BL96791_cuf9-protein|Name=transcript:BL96791_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=877bp
PMHDKGHDVYSCGGINEWEMQLFEAYMFALDRINADPSILPSVRLGSLAL DTCESARKASRDIANFLSGEKTYYVTEYSSTFVEPASTLAVIGASVGDVS LNAMEVVETFKMAQVSYASPEIPMATRENYGYFLRTIPALERQVQALMDM ASYFKWKYVSVLYTPTVYGTVLFESFKEEAKTRGICLAVQKEIRNNFTQT SYDDVIVELRRKGEASTVILFTERAETENVLLAAQRVNVRSFYTWIVTTK VASDVDVPLAQDPVINGAVLLKVETQEVPEFDTYLETLTPETNQRNPWFK EFWQEHFQCNLPNEPVKYPVVCSGSERLTESSLTRNPAIVHVIRAVYAVA HGLDTTRKFYCPTEPEVCDNFRNANDKPERAFGFVRDVDLIGIAGSRFRF TTTGDGDVGYEILNYEITAPPSRYGYVKIGTWSDGLFLERSPQSTSTDNV KYPASECTGECAECVQQGILPAPPQERRIDVPTQVRTRDVWAIICMTLAA LGMFLTLMLMIYFLVKVRSSSLSGVTTSTSLGYLILFGLFAMYAMVLPFV MTPNDVVCGVRRFGLGFFYAMTHGAILVKTIRIWRMSRMEKAGMPGEEAK FTRNWSNVFIVCTLLLPQVAIGVSWLLASPPATYSLGSTIYCGYSRAGLL FSLLYVMFLVFLTVIYSFVARNYSMNMWEARYIIAMTWLCVCVWISWACV YMLTDRDFWDPAVCVGLLLIATFILILLFVPKLQAFATYHHSFTSRYDIN KRPNSIQRSDVETDSLGSLDSIYGVASLQDSAVTADAFYRSKTSNGKLSR SVSNTSNHAGASNLYVYDGRRGRILSARRKFVRNPRYLHGHQRRDRVNLA LNWLTLPPKSDRRSRSNSDQRFHTMYF Run BLAST on NCBI mRNA from alignment at Sc0000211:219167..222121+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96791_cuf9 ID=transcript:BL96791_cuf9|Name=transcript:BL96791_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=2955bp|location=Sequence derived from alignment at Sc0000211:219167..222121+ (Branchiostoma lanceolatum) TCCAATGCACGATAAAGGCCACGACGTTTACTCCTGTGGAGGCATCAACG
AGTGGGAGATGCAGCTGTTCGAGGCCTACATGTTCGCGCTGGACCGCATC
AACGCCGACCCCTCCATCCTGCCGTCCGTGCGCCTCGGCTCGCTCGCCTT
AGACACCTGCGAGAGCGCTAGGAAGGCGTCGCGAGACATCGCCAACTTCC
TCAGCGGCGAGAAGACGTACTACGTCACCGAGTATTCGAGCACGTTCGTC
GAACCGGCATCAACTCTTGCCGTTATCGGAGCCTCGGTGGGAGATGTGTC
ACTGAACGCCATGGAAGTCGTCGAGACATTCAAGATGGCGCAGGTTTCCT
ACGCGTCACCGGAAATCCCCATGGCAACGAGAGAGAATTATGGGTATTTC
CTCAGGACGATCCCAGCGCTGGAGAGGCAGGTGCAGGCCCTGATGGACAT
GGCGTCGTACTTCAAGTGGAAATACGTCTCGGTGTTGTACACGCCAACAG
TGTACGGGACGGTGCTTTTCGAGAGTTTTAAAGAGGAAGCCAAGACGCGA
GGAATCTGTTTGGCCGTGCAGAAGGAAATCCGCAACAACTTCACCCAGAC
GAGTTACGATGATGTTATTGTGGAACTGAGGAGAAAGGGCGAGGCTTCAA
CCGTCATACTCTTCACAGAGAGGGCGGAGACAGAGAACGTTCTTCTGGCG
GCGCAGCGCGTAAACGTTCGCTCGTTCTATACCTGGATCGTCACCACCAA
GGTAGCCAGCGACGTCGACGTTCCACTCGCGCAAGACCCCGTTATCAACG
GCGCCGTTCTCCTTAAGGTTGAAACGCAGGAAGTACCCGAGTTCGACACC
TACCTCGAGACGCTAACCCCGGAGACCAACCAAAGAAACCCGTGGTTTAA
AGAGTTTTGGCAGGAACATTTTCAGTGTAACTTGCCGAACGAGCCCGTTA
AGTACCCAGTGGTGTGTTCTGGTAGCGAGAGACTAACTGAGAGTAGTTTA
ACGCGCAACCCTGCAATAGTTCACGTCATAAGGGCGGTGTACGCAGTGGC
TCACGGACTCGACACGACGCGGAAGTTCTACTGTCCGACAGAGCCGGAGG
TGTGCGACAACTTTCGGAACGCCAACGATAAGCCGGAGAGAGCGTTCGGC
TTCGTTCGGGACGTAGACTTGATTGGCATTGCTGGAAGTCGCTTTCGTTT
CACAACGACTGGAGACGGGGACGTTGGATACGAGATTCTGAATTATGAAA
TCACGGCTCCACCAAGCAGATACGGATATGTAAAGGTGGGTGTATAAAAC
ATGACATAATGTGAAGAACCGCATGAATTCGAGCTATATGCTGCATATCT
TTTATCTGTGAAAATGTATCGGTGCATGCCATCCTCGTAGTGCTTTTGTT
AGGTAGCCTTTCTAGCATTTCATCCAGTGATACGGCGATGTTCTATCTCA
ATAATCTTTGGAATCATTACCTCCGTGAAAACGGAATTGCACAGTGGCAA
GATATAACAGGCGGAAGTGGTGTAATAGGATACTTGTTGACTCCACATTC
CTCTTGCAGATCGGCACGTGGAGCGACGGGTTGTTCCTGGAGCGCAGTCC
CCAGAGCACCAGTACGGATAACGTGAAGTACCCGGCCTCGGAGTGTACCG
GGGAGTGTGCGGAGTGCGTTCAGCAGGGCATCCTGCCCGCCCCGCCACAG
GAACGGCGCATCGACGTCCCGACGCAGGTCCGGACCAGAGACGTCTGGGC
GATCATCTGTATGACGCTCGCGGCCCTGGGAATGTTCTTAACCCTCATGT
TGATGATCTATTTCCTTGTTAAAGTCCGCTCCTCCTCTCTGTCGGGTGTC
ACTACCTCCACCTCTCTCGGCTATCTCATACTCTTTGGTCTCTTCGCCAT
GTACGCTATGGTCCTGCCGTTCGTCATGACGCCGAACGACGTGGTGTGCG
GCGTGCGTCGCTTCGGCTTGGGGTTCTTCTACGCGATGACGCACGGCGCC
ATCCTGGTCAAGACCATCCGCATCTGGCGCATGTCCCGGATGGAGAAGGC
CGGCATGCCCGGCGAGGAGGCCAAGTTCACCCGCAACTGGAGCAACGTCT
TCATCGTCTGCACCCTGCTGCTGCCGCAAGTCGCCATCGGAGTCAGCTGG
CTGCTGGCGAGCCCGCCCGCCACGTACTCCCTCGGCTCCACCATCTACTG
CGGGTACAGCAGAGCCGGCCTGCTGTTCTCCCTGCTGTATGTCATGTTCC
TGGTGTTCCTTACCGTCATCTACAGCTTCGTGGCGAGGAATTACAGCATG
AACATGTGGGAGGCTCGCTACATCATCGCCATGACCTGGCTGTGCGTGTG
CGTGTGGATCTCGTGGGCATGCGTCTACATGCTGACCGACAGAGACTTCT
GGGATCCAGCCGTGTGCGTCGGCCTCCTCCTCATCGCCACGTTCATTCTC
ATCCTCCTGTTCGTCCCGAAGCTGCAGGCATTCGCCACGTACCACCACAG
CTTTACCTCGCGGTACGACATCAACAAGAGGCCCAACTCTATACAGCGTT
CAGACGTCGAAACAGACTCCTTGGGCTCGCTGGACAGTATCTACGGCGTT
GCGAGCCTACAGGACAGTGCGGTGACCGCCGACGCCTTCTACCGCTCCAA
GACGTCCAACGGAAAGCTGTCGAGGAGCGTGTCGAACACCAGCAACCATG
CGGGGGCCAGTAACCTGTATGTCTACGACGGACGACGAGGTAGAATTTTA
AGTGCCCGTCGGAAATTTGTGCGTAACCCTAGGTATCTCCACGGCCATCA
GCGACGCGATCGTGTAAATCTTGCCCTCAATTGGCTGACGTTGCCTCCTA
AGTCAGACCGTAGGTCGCGCTCAAATTCGGATCAACGGTTTCATACCATG
TATTTCTAAAAGACTTCTAAAAGAACTACAGTGAAATGAGTGCCATGAAA
TCTTG Coding sequence (CDS) from alignment at Sc0000211:219167..222121+ >transcript:BL96791_cuf9 ID=transcript:BL96791_cuf9|Name=transcript:BL96791_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=5268bp|location=Sequence derived from alignment at Sc0000211:219167..222121+ (Branchiostoma lanceolatum) CCAATGCACGATAAAGGCCACGACGTTTACTCCTGTGGAGGCATCAACGA GTGGGAGATGCAGCTGTTCGAGGCCTACATGTTCGCGCTGGACCGCATCA ACGCCGACCCCTCCATCCTGCCGTCCGTGCGCCTCGGCTCGCTCGCCTTA GACACCTGCGAGAGCGCTAGGAAGGCGTCGCGAGACATCGCCAACTTCCT CAGCGGCGAGAAGACGTACTACGTCACCGAGTATTCGAGCACGTTCGTCG AACCGGCATCAACTCTTGCCGTTATCGGAGCCTCGGTGGGAGATGTGTCA CTGAACGCCATGGAAGTCGTCGAGACATTCAAGATGGCGCAGGTTTCCTA CGCGTCACCGGAAATCCCCATGGCAACGAGAGAGAATTATGGGTATTTCC TCAGGACGATCCCAGCGCTGGAGAGGCAGGTGCAGGCCCTGATGGACATG GCGTCGTACTTCAAGTGGAAATACGTCTCGGTGTTGTACACGCCAACAGT GTACGGGACGGTGCTTTTCGAGAGTTTTAAAGAGGAAGCCAAGACGCGAG GAATCTGTTTGGCCGTGCAGAAGGAAATCCGCAACAACTTCACCCAGACG AGTTACGATGATGTTATTGTGGAACTGAGGAGAAAGGGCGAGGCTTCAAC CGTCATACTCTTCACAGAGAGGGCGGAGACAGAGAACGTTCTTCTGGCGG CGCAGCGCGTAAACGTTCGCTCGTTCTATACCTGGATCGTCACCACCAAG GTAGCCAGCGACGTCGACGTTCCACTCGCGCAAGACCCCGTTATCAACGG CGCCGTTCTCCTTAAGGTTGAAACGCAGGAAGTACCCGAGTTCGACACCT ACCTCGAGACGCTAACCCCGGAGACCAACCAAAGAAACCCGTGGTTTAAA GAGTTTTGGCAGGAACATTTTCAGTGTAACTTGCCGAACGAGCCCGTTAA GTACCCAGTGGTGTGTTCTGGTAGCGAGAGACTAACTGAGAGTAGTTTAA CGCGCAACCCTGCAATAGTTCACGTCATAAGGGCGGTGTACGCAGTGGCT CACGGACTCGACACGACGCGGAAGTTCTACTGTCCGACAGAGCCGGAGGT GTGCGACAACTTTCGGAACGCCAACGATAAGCCGGAGAGAGCGTTCGGCT TCGTTCGGGACGTAGACTTGATTGGCATTGCTGGAAGTCGCTTTCGTTTC ACAACGACTGGAGACGGGGACGTTGGATACGAGATTCTGAATTATGAAAT CACGGCTCCACCAAGCAGATACGGATATGTAAAGATCGGCACGTGGAGCG ACGGGTTGTTCCTGGAGCGCAGTCCCCAGAGCACCAGTACGGATAACGTG AAGTACCCGGCCTCGGAGTGTACCGGGGAGTGTGCGGAGTGCGTTCAGCA GGGCATCCTGCCCGCCCCGCCACAGGAACGGCGCATCGACGTCCCGACGC AGGTCCGGACCAGAGACGTCTGGGCGATCATCTGTATGACGCTCGCGGCC CTGGGAATGTTCTTAACCCTCATGTTGATGATCTATTTCCTTGTTAAAGT CCGCTCCTCCTCTCTGTCGGGTGTCACTACCTCCACCTCTCTCGGCTATC TCATACTCTTTGGTCTCTTCGCCATGTACGCTATGGTCCTGCCGTTCGTC ATGACGCCGAACGACGTGGTGTGCGGCGTGCGTCGCTTCGGCTTGGGGTT CTTCTACGCGATGACGCACGGCGCCATCCTGGTCAAGACCATCCGCATCT GGCGCATGTCCCGGATGGAGAAGGCCGGCATGCCCGGCGAGGAGGCCAAG TTCACCCGCAACTGGAGCAACGTCTTCATCGTCTGCACCCTGCTGCTGCC GCAAGTCGCCATCGGAGTCAGCTGGCTGCTGGCGAGCCCGCCCGCCACGT ACTCCCTCGGCTCCACCATCTACTGCGGGTACAGCAGAGCCGGCCTGCTG TTCTCCCTGCTGTATGTCATGTTCCTGGTGTTCCTTACCGTCATCTACAG CTTCGTGGCGAGGAATTACAGCATGAACATGTGGGAGGCTCGCTACATCA TCGCCATGACCTGGCTGTGCGTGTGCGTGTGGATCTCGTGGGCATGCGTC TACATGCTGACCGACAGAGACTTCTGGGATCCAGCCGTGTGCGTCGGCCT CCTCCTCATCGCCACGTTCATTCTCATCCTCCTGTTCGTCCCGAAGCTGC AGGCATTCGCCACGTACCACCACAGCTTTACCTCGCGGTACGACATCAAC AAGAGGCCCAACTCTATACAGCGTTCAGACGTCGAAACAGACTCCTTGGG CTCGCTGGACAGTATCTACGGCGTTGCGAGCCTACAGGACAGTGCGGTGA CCGCCGACGCCTTCTACCGCTCCAAGACGTCCAACGGAAAGCTGTCGAGG AGCGTGTCGAACACCAGCAACCATGCGGGGGCCAGTAACCTGTATGTCTA CGACGGACGACGAGGTAGAATTTTAAGTGCCCGTCGGAAATTTGTGCGTA ACCCTAGGTATCTCCACGGCCATCAGCGACGCGATCGTGTAAATCTTGCC CTCAATTGGCTGACGTTGCCTCCTAAGTCAGACCGTAGGTCGCGCTCAAA TTCGGATCAACGGTTTCATACCATGTATTTCTAACCAATGCACGATAAAG GCCACGACGTTTACTCCTGTGGAGGCATCAACGAGTGGGAGATGCAGCTG TTCGAGGCCTACATGTTCGCGCTGGACCGCATCAACGCCGACCCCTCCAT CCTGCCGTCCGTGCGCCTCGGCTCGCTCGCCTTAGACACCTGCGAGAGCG CTAGGAAGGCGTCGCGAGACATCGCCAACTTCCTCAGCGGCGAGAAGACG TACTACGTCACCGAGTATTCGAGCACGTTCGTCGAACCGGCATCAACTCT TGCCGTTATCGGAGCCTCGGTGGGAGATGTGTCACTGAACGCCATGGAAG TCGTCGAGACATTCAAGATGGCGCAGGTTTCCTACGCGTCACCGGAAATC CCCATGGCAACGAGAGAGAATTATGGGTATTTCCTCAGGACGATCCCAGC GCTGGAGAGGCAGGTGCAGGCCCTGATGGACATGGCGTCGTACTTCAAGT GGAAATACGTCTCGGTGTTGTACACGCCAACAGTGTACGGGACGGTGCTT TTCGAGAGTTTTAAAGAGGAAGCCAAGACGCGAGGAATCTGTTTGGCCGT GCAGAAGGAAATCCGCAACAACTTCACCCAGACGAGTTACGATGATGTTA TTGTGGAACTGAGGAGAAAGGGCGAGGCTTCAACCGTCATACTCTTCACA GAGAGGGCGGAGACAGAGAACGTTCTTCTGGCGGCGCAGCGCGTAAACGT TCGCTCGTTCTATACCTGGATCGTCACCACCAAGGTAGCCAGCGACGTCG ACGTTCCACTCGCGCAAGACCCCGTTATCAACGGCGCCGTTCTCCTTAAG GTTGAAACGCAGGAAGTACCCGAGTTCGACACCTACCTCGAGACGCTAAC CCCGGAGACCAACCAAAGAAACCCGTGGTTTAAAGAGTTTTGGCAGGAAC ATTTTCAGTGTAACTTGCCGAACGAGCCCGTTAAGTACCCAGTGGTGTGT TCTGGTAGCGAGAGACTAACTGAGAGTAGTTTAACGCGCAACCCTGCAAT AGTTCACGTCATAAGGGCGGTGTACGCAGTGGCTCACGGACTCGACACGA CGCGGAAGTTCTACTGTCCGACAGAGCCGGAGGTGTGCGACAACTTTCGG AACGCCAACGATAAGCCGGAGAGAGCGTTCGGCTTCGTTCGGGACGTAGA CTTGATTGGCATTGCTGGAAGTCGCTTTCGTTTCACAACGACTGGAGACG GGGACGTTGGATACGAGATTCTGAATTATGAAATCACGGCTCCACCAAGC AGATACGGATATGTAAAGATCGGCACGTGGAGCGACGGGTTGTTCCTGGA GCGCAGTCCCCAGAGCACCAGTACGGATAACGTGAAGTACCCGGCCTCGG AGTGTACCGGGGAGTGTGCGGAGTGCGTTCAGCAGGGCATCCTGCCCGCC CCGCCACAGGAACGGCGCATCGACGTCCCGACGCAGGTCCGGACCAGAGA CGTCTGGGCGATCATCTGTATGACGCTCGCGGCCCTGGGAATGTTCTTAA CCCTCATGTTGATGATCTATTTCCTTGTTAAAGTCCGCTCCTCCTCTCTG TCGGGTGTCACTACCTCCACCTCTCTCGGCTATCTCATACTCTTTGGTCT CTTCGCCATGTACGCTATGGTCCTGCCGTTCGTCATGACGCCGAACGACG TGGTGTGCGGCGTGCGTCGCTTCGGCTTGGGGTTCTTCTACGCGATGACG CACGGCGCCATCCTGGTCAAGACCATCCGCATCTGGCGCATGTCCCGGAT GGAGAAGGCCGGCATGCCCGGCGAGGAGGCCAAGTTCACCCGCAACTGGA GCAACGTCTTCATCGTCTGCACCCTGCTGCTGCCGCAAGTCGCCATCGGA GTCAGCTGGCTGCTGGCGAGCCCGCCCGCCACGTACTCCCTCGGCTCCAC CATCTACTGCGGGTACAGCAGAGCCGGCCTGCTGTTCTCCCTGCTGTATG TCATGTTCCTGGTGTTCCTTACCGTCATCTACAGCTTCGTGGCGAGGAAT TACAGCATGAACATGTGGGAGGCTCGCTACATCATCGCCATGACCTGGCT GTGCGTGTGCGTGTGGATCTCGTGGGCATGCGTCTACATGCTGACCGACA GAGACTTCTGGGATCCAGCCGTGTGCGTCGGCCTCCTCCTCATCGCCACG TTCATTCTCATCCTCCTGTTCGTCCCGAAGCTGCAGGCATTCGCCACGTA CCACCACAGCTTTACCTCGCGGTACGACATCAACAAGAGGCCCAACTCTA TACAGCGTTCAGACGTCGAAACAGACTCCTTGGGCTCGCTGGACAGTATC TACGGCGTTGCGAGCCTACAGGACAGTGCGGTGACCGCCGACGCCTTCTA CCGCTCCAAGACGTCCAACGGAAAGCTGTCGAGGAGCGTGTCGAACACCA GCAACCATGCGGGGGCCAGTAACCTGTATGTCTACGACGGACGACGAGGT AGAATTTTAAGTGCCCGTCGGAAATTTGTGCGTAACCCTAGGTATCTCCA CGGCCATCAGCGACGCGATCGTGTAAATCTTGCCCTCAATTGGCTGACGT TGCCTCCTAAGTCAGACCGTAGGTCGCGCTCAAATTCGGATCAACGGTTT CATACCATGTATTTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000211 | genome | Sc0000211:219167..222121 + |
Properties
Property Name | Value |
Transcript id | BL96791_cuf9 |
Biotype | protein_coding |
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