|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97348_cuf0 >transcript:BL97348_cuf0-protein ID=transcript:BL97348_cuf0-protein|Name=transcript:BL97348_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=189bp
VPGYTERDGTHYKVFDQAMTYSDAQHACAVDGGHLAHMTTQELHDFLVSL
IQESGAGGDYWIGLQDVAHEGDWGLNTWAWSDGTPISDCFSNWAPGEPGN
SAGNDCGQLWEGMGLKWDDTYCDIQKNFICQIGPDEDCAPEVEDCTEGQR
QCLNGLCITEDYWCDGQFQDCSGGEDEANCEGELSGYTE Run BLAST on NCBI mRNA from alignment at Sc0000148:685675..689365- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97348_cuf0 ID=transcript:BL97348_cuf0|Name=transcript:BL97348_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3691bp|location=Sequence derived from alignment at Sc0000148:685675..689365- (Branchiostoma lanceolatum)
CAGTGCCCGGGTACACTGAGCGTGATGGAACCCACTACAAGGTGTTTGAC
CAAGCCATGACGTACAGTGATGCTCAGCACGCCTGCGCAGTAGATGGAGG
GCACCTTGCCCATATGACGACCCAGGAGCTGCACGACTTCCTCGTCTCCC
TGATTCAGGAGTCTGGTGCAGGCGGGGACTACTGGATCGGACTGCAGGAT
GTTGCAGTGAGTACCCAAAATGATACAAATTTTACCTTTTCAAGACCGTA
TCCTTTTCTGATCTATACAATTCTTTGACTTTAAAAACATTGTGTTGTCT
CTAATGCGTGCATTTTAGCAATATGTGGTGAGCTGCCCTATGGAATTCCT
TACTCTCAGTATACGGCTAGCGGCTGGACACTTGGTGGCATTTCAAAAAT
GCAGTTTTTGAATTTGATAGAAAATTGATTAGATATGTGCATTAGGGGAA
TAGCCATAAGCCACATTCTGGAATATTATTATTATGTAAGGACTGCGACG
TCGAGGATGCGTAACAGTTAGATCATTCGATTCGAAGCCCATATGTTTCG
GGTTCGAAACTCGCCATGCCCCGGCGTTCTGCCCTAGGGAAAGGCACTTT
ACACGCAATACTAAAGTGATAGATAGGACAAAGCGAGATAACTGGGAAAT
AGTGTTGCTCAACCCACACGTACTAAAGGAGGTGCTCCCAATGTGACCTG
CACAGCAGTTTGAGGGGGGATTCGACCTCCATAGTCACATTAACCTATTA
AACCCAGTGGCCAACCCGGTATTGACCATTTAGAACTGTTTGTAAACGTG
GACTTTCAGTTTCAATGCGTATTTTTTACTAGAGTGTTGGTGTTTTTTTA
ACCCTGTGCCCGTTATTCCGTAAAGATTTGATTCGCTTTGGCACCTTTGA
GAAGTTGATATTGTGTGGCTGTTGATATAGCCTTTTCCTTAAGTGAATCA
TACAATACGAGTCTATTTGGGTCCAATTCCTCTAACCCCCTTGAAAGTTA
GCTGGGACAGGGCCCAAGTCTCATGTTGTCAGACCTGGGCGGTGTTGCTG
AAAAGTGTTGTGCTATAAAAAATGTGTGCTAGTATTCTATGCAAACGACT
TTAAAGTATCAAACTTCATTTCATAGTTCAACACACTTGTAAACTAATTA
TAACGAGATATAGACACAGTAATTGAGGGACTCACATTGGCTGATTGGTA
ATGGTCATCTTCTAACATGATTTTCTGTTGATCTGTCAAAACTGAAGTGT
GCAAACATCAGAGACGGATTTGTGCGCCAACATTTGCATAATTGCTAACA
AGAACCGTTATTTCTTTTACAGCATGAAGGTGACTGGGGGTTAAACACAT
GGGCCTGGTCTGATGGAACTCCTATCAGCGATTGCTTCTCCAACTGGGCA
CCGGGAGAGCCCGGAAACAGTGCTGGGAATGACTGCGGGCAGCTCTGGGA
AGGCATGGGTCTCAAATGGGACGACACCTATTGTGACATCCAGAAGAACT
TCATCTGCCAAATAGGTAATTCTTTGTCTCATTCAGGGATTCACAGATTC
AGAGTGAACTTTTTCATTTGATTATTATCTGCATCATCTAAATTCATTTA
CCCCCAAATAGCCCCTACAGGGGTAAAGTAGGGGGGATTGATGTCCCGGG
ATAAGGCGGGCAGGCCTCCAGGCTGGCACGGGACGACTCAATGGTGGGAG
CCGTCGCAACCGTGCCAGGCAGGGTGTTCCACTGTGGGATAGTACGGGGA
AAGACTTTGTGTTTATAAATATCATTTATTGCCTGAATGGTGTAAAACTT
AAGGTCGTGGCTCCCCCGGGTGCGCCCCTAGGCTGGTTTCAGCAAACTGT
GTCTATATTAATATGGTTGTTAACAACTTTGTAGAAGAAGGTGAGGCGGA
CGTTCCTCCTCCTTTCAGAGAGATGGGCTCACTGCAGGTCGTTGAGCATT
TGTGTCAGGTATAATCGTACATGGCTACTGTCGAACAAGACTTTACGATT
TTGTTTCATTATATTTTTCTACTGTAACGTCAATAAAGAATTTTAATCTT
TGCCATTTGCTTTTTGCAGGTCCTGATGAAGACTGTGCACCAGAAGGTAA
TGTTAATCTTGTACTGCATCCAAAATATTAGTATTTTGGCCTATTTTTGG
ACGAAAAGTACCTTCATTTTACATGTACACTCTTTGGATATATTTCATCA
GTTTAGGACCGAACGCAACACTTCAAATTAGTACGTCCTGTTTAATCTGT
TTGATTCTGTTAAGTTTCTTCCTGCGTAATTCCTGCACGTCTTGGCATTG
TCACCTGCACCTTGAATTACCAGTATAATCTCTTCTGTATCGTTGTTGAT
AGCGAACTTTGTGACTTCGGGTGCCAGTGTGAAAAATAGATCATTTGCTT
ACACAGCCCCCTCAGATCCTCTGTTCTTGGAAAGCGCTCATTGTACACTG
CAATTCGCACTGTAATCCTTGATAAGGCTAAACGAAGAACCCCCTTTTTA
AACAATTTTTTGCTGTTGATTTTTTTTCGCTCTAAAAACCTTCGCCAAGA
AAGGCATGGATTCGGGGCTATTTGGCTGTCTTTTATGTTGTTTAATCTGT
GTTGGCAACGTACGTCGAGAAGTCTTGGATGGATATTCATAACATTTCGT
ACGTCAGTAAGTGTTGACAAAGTAAAAAAAAATGGTCAGATTACTGCCCC
CCCTCCTTTTACTTGCCTTCCATATTGTTCTGCAGCAGAACTTCTAGAAA
ACTTAAAGTCTAAGGTAATGGAACCCATATAATGAAATCAAACCTTTTTC
TCCTTCTAAGTTACTGTCCTTTCGCTTTTTTTCCGTCGAAGGAGAGGGGG
ATCAGACTTGCCCAAACTGCAGGCAAAATTCTGTGTTTCATGATTATGGC
TTAAACAGTTTACACTTAGAGGCGAGTCTAATGTGAGTTTATAGCATGTA
ATAAAACGGCATTTTCCTCCATATTTTTATAAGTTGAGGATTGTACGGAG
GGTCAACGCCAGTGTTTGAACGGGTTGTGCATCACTGAAGACTACTGGTG
TGATGGGCAGTTTCAGGACTGCAGTGGCGGTGAGGACGAAGCTAACTGTG
AAGGTGAATGTGAGTATGGAATGCTAACTATGACTTACTGGTTTTAGAAA
AAAGATATAATTTACGCTGCTTCTTACTTTATAAAAGGTTTATCTCCAAT
CGGAATAAGGTTTCAACAATCACATCGTACTGAAATATATTACTTGTGAT
CCTATATAATCATCTAAATAAAATACAAAGTAGGTCTTAGGAAAATAATT
TCATCAATACCTGGTTGTGTATAAAGAATATCCCATATCCTACAGAGTAG
GTCCTTATGCCAGGAAAAACAACAATTCGAGTTGTTCACTGAGAGGGATT
CATGTAAAATGTGGAAATCAGAAAGGGAGAAATATTCAAATATATCGGTT
ATGAAGATAAGCTTGGTGAAGATTAATGTTCATACTTTTATACACATTCG
ATATGCACTTATAAAGCTCACGTGGCATTTACATCCCCCCCTCTTTGGCA
CATGCACAAGAATTGGGGGGGGGGGGGTATTGCTTTAATAAATCTCAGAG
TATTTCCAAAACTAGCGGCAGCAAGGTTAGATTTTTGTTTAAAGATTTAA
CAGGAATATCCTCACCTACCACAGTGTCCGGGTACACCGAG Coding sequence (CDS) from alignment at Sc0000148:685675..689365- >transcript:BL97348_cuf0 ID=transcript:BL97348_cuf0|Name=transcript:BL97348_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2835bp|location=Sequence derived from alignment at Sc0000148:685675..689365- (Branchiostoma lanceolatum)
GTGCCCGGGTACACTGAGCGTGATGGAACCCACTACAAGGTGTTTGACCA
AGCCATGACGTACAGTGATGCTCAGCACGCCTGCGCAGTAGATGGAGGGC
ACCTTGCCCATATGACGACCCAGGAGCTGCACGACTTCCTCGTCTCCCTG
ATTCAGGAGTCTGGTGCAGGCGGGGACTACTGGATCGGACTGCAGGATGT
TGCACATGAAGGTGACTGGGGGTTAAACACATGGGCCTGGTCTGATGGAA
CTCCTATCAGCGATTGCTTCTCCAACTGGGCACCGGGAGAGCCCGGAAAC
AGTGCTGGGAATGACTGCGGGCAGCTCTGGGAAGGCATGGGTCTCAAATG
GGACGACACCTATTGTGACATCCAGAAGAACTTCATCTGCCAAATAGGTC
CTGATGAAGACTGTGCACCAGAAGTTGAGGATTGTACGGAGGGTCAACGC
CAGTGTTTGAACGGGTTGTGCATCACTGAAGACTACTGGTGTGATGGGCA
GTTTCAGGACTGCAGTGGCGGTGAGGACGAAGCTAACTGTGAAGGTGAAT
TGTCCGGGTACACCGAGGTGCCCGGGTACACTGAGCGTGATGGAACCCAC
TACAAGGTGTTTGACCAAGCCATGACGTACAGTGATGCTCAGCACGCCTG
CGCAGTAGATGGAGGGCACCTTGCCCATATGACGACCCAGGAGCTGCACG
ACTTCCTCGTCTCCCTGATTCAGGAGTCTGGTGCAGGCGGGGACTACTGG
ATCGGACTGCAGGATGTTGCACATGAAGGTGACTGGGGGTTAAACACATG
GGCCTGGTCTGATGGAACTCCTATCAGCGATTGCTTCTCCAACTGGGCAC
CGGGAGAGCCCGGAAACAGTGCTGGGAATGACTGCGGGCAGCTCTGGGAA
GGCATGGGTCTCAAATGGGACGACACCTATTGTGACATCCAGAAGAACTT
CATCTGCCAAATAGGTCCTGATGAAGACTGTGCACCAGAAGTTGAGGATT
GTACGGAGGGTCAACGCCAGTGTTTGAACGGGTTGTGCATCACTGAAGAC
TACTGGTGTGATGGGCAGTTTCAGGACTGCAGTGGCGGTGAGGACGAAGC
TAACTGTGAAGGTGAATTGTCCGGGTACACCGAGGTGCCCGGGTACACTG
AGCGTGATGGAACCCACTACAAGGTGTTTGACCAAGCCATGACGTACAGT
GATGCTCAGCACGCCTGCGCAGTAGATGGAGGGCACCTTGCCCATATGAC
GACCCAGGAGCTGCACGACTTCCTCGTCTCCCTGATTCAGGAGTCTGGTG
CAGGCGGGGACTACTGGATCGGACTGCAGGATGTTGCACATGAAGGTGAC
TGGGGGTTAAACACATGGGCCTGGTCTGATGGAACTCCTATCAGCGATTG
CTTCTCCAACTGGGCACCGGGAGAGCCCGGAAACAGTGCTGGGAATGACT
GCGGGCAGCTCTGGGAAGGCATGGGTCTCAAATGGGACGACACCTATTGT
GACATCCAGAAGAACTTCATCTGCCAAATAGGTCCTGATGAAGACTGTGC
ACCAGAAGTTGAGGATTGTACGGAGGGTCAACGCCAGTGTTTGAACGGGT
TGTGCATCACTGAAGACTACTGGTGTGATGGGCAGTTTCAGGACTGCAGT
GGCGGTGAGGACGAAGCTAACTGTGAAGGTGAATTGTCCGGGTACACCGA
GGTGCCCGGGTACACTGAGCGTGATGGAACCCACTACAAGGTGTTTGACC
AAGCCATGACGTACAGTGATGCTCAGCACGCCTGCGCAGTAGATGGAGGG
CACCTTGCCCATATGACGACCCAGGAGCTGCACGACTTCCTCGTCTCCCT
GATTCAGGAGTCTGGTGCAGGCGGGGACTACTGGATCGGACTGCAGGATG
TTGCACATGAAGGTGACTGGGGGTTAAACACATGGGCCTGGTCTGATGGA
ACTCCTATCAGCGATTGCTTCTCCAACTGGGCACCGGGAGAGCCCGGAAA
CAGTGCTGGGAATGACTGCGGGCAGCTCTGGGAAGGCATGGGTCTCAAAT
GGGACGACACCTATTGTGACATCCAGAAGAACTTCATCTGCCAAATAGGT
CCTGATGAAGACTGTGCACCAGAAGTTGAGGATTGTACGGAGGGTCAACG
CCAGTGTTTGAACGGGTTGTGCATCACTGAAGACTACTGGTGTGATGGGC
AGTTTCAGGACTGCAGTGGCGGTGAGGACGAAGCTAACTGTGAAGGTGAA
TTGTCCGGGTACACCGAGGTGCCCGGGTACACTGAGCGTGATGGAACCCA
CTACAAGGTGTTTGACCAAGCCATGACGTACAGTGATGCTCAGCACGCCT
GCGCAGTAGATGGAGGGCACCTTGCCCATATGACGACCCAGGAGCTGCAC
GACTTCCTCGTCTCCCTGATTCAGGAGTCTGGTGCAGGCGGGGACTACTG
GATCGGACTGCAGGATGTTGCACATGAAGGTGACTGGGGGTTAAACACAT
GGGCCTGGTCTGATGGAACTCCTATCAGCGATTGCTTCTCCAACTGGGCA
CCGGGAGAGCCCGGAAACAGTGCTGGGAATGACTGCGGGCAGCTCTGGGA
AGGCATGGGTCTCAAATGGGACGACACCTATTGTGACATCCAGAAGAACT
TCATCTGCCAAATAGGTCCTGATGAAGACTGTGCACCAGAAGTTGAGGAT
TGTACGGAGGGTCAACGCCAGTGTTTGAACGGGTTGTGCATCACTGAAGA
CTACTGGTGTGATGGGCAGTTTCAGGACTGCAGTGGCGGTGAGGACGAAG
CTAACTGTGAAGGTGAATTGTCCGGGTACACCGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000148 | genome | Sc0000148:685675..689365 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97348_cuf0 |
| Biotype | protein_coding |
|
