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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97395_cuf4 >transcript:BL97395_cuf4-protein ID=transcript:BL97395_cuf4-protein|Name=transcript:BL97395_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=242bp
ARAVSREEDLVLSAAASYDPNGIVTESAGFNFTWSCLDENGRPCGIFTDG
GRGPQYRIPPASLPVSSSVLNISVAASSGRQTAPPFRQRVELRNGTVLEV
DIVDCNQRANPSERLVLLTSCRNCPASSTAYQWSLSESPPGVQIGEADWS
GLLSTTSTAPSLVLTANSLKVPGTYRIRLDVSAPGEAEGFTECVIDMDSA
PESGACAVQPASGTAEFSVVCEGFSDVDTPLTYSLYRRSDSH Run BLAST on NCBI mRNA from alignment at Sc0000112:887665..889560- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97395_cuf4 ID=transcript:BL97395_cuf4|Name=transcript:BL97395_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=1896bp|location=Sequence derived from alignment at Sc0000112:887665..889560- (Branchiostoma lanceolatum)
CGCCAGGGCCGTGAGCCGAGAGGAGGACTTGGTACTCAGCGCGGCCGCTT
CCTACGACCCTAACGGCATTGTGACAGAGTCAGCAGGTTTCAACTTTACA
TGGAGTTGCTTGGATGAAAACGGTAAGTTTGACGATGTACCAGTCAGACC
TGTGACAAATCTTTAATTCTACAATTTCATGTTGCATTTTCCGCTTAGTT
CCACCTCGTTCTACAGGCAATAATCGAGTAAGATTGGAAGGATGATACAT
TGTTGACAGCCAGAATGTTTGTATCTCCCATCCCAGGGCGTCCTTGCGGC
ATATTCACGGACGGAGGGCGCGGGCCGCAGTACAGGATCCCCCCGGCGTC
GTTACCGGTCTCCTCCAGCGTGTTAAACATTTCGGTAGCGGCGAGTTCCG
GCCGGCAAACAGCCCCGCCCTTCCGGCAGAGAGTCGAGCTGCGTAACGGC
ACTGTGCTGGAGGTGGACATCGTGTAAGTGCTCTTGTCAGAAACATGGCG
TCTTCCCAACATTCATATGATAAGAGTATGATAATTATAAATAGGTAATA
GAAAAAAATAAGACGTAGGTTCTGCATCTGCATTGTTCAATCGCAACGCA
ACAGTAGTTTTTTTTCTGCGCGCGTCTCAACGTGTTAATATTGTAAAGTA
CAACCCATGCTATAGTTTGCACACTTCTTACACTATCTAAGTGACCACTA
CTTGTAAACCTCATATCTGATTGATGCATATCCTTGCAATGTAAGACTGT
AATTTCACTTTTTCATTTGTTTAATTTTTCAACCAACACAGAGATTGTAA
CCAGCGCGCCAATCCTTCTGAGCGGCTCGTGCTGCTGACGTCATGTCGGA
ACTGCCCAGCATCCTCCACGGCGTACCAGTGGTCGCTGTCCGAGAGTCCG
CCTGGGGTTCAGATTGGGGAAGCTGACTGGAGCGGCCTCCTCTCTACCAC
CAGCACAGCACCCAGCCTGGTTCTCACGGCTAACTCACTCAAGGTTTGTA
CATACATGTACATGTAGTAAGATTTTTAGCGAGTCCGCCTGGGGTTCAGA
TTGAGGGAGCTGACTGGAGCGGCCTCCTCTCTACCTCCAGTACAGCACCC
AACCTGGTTCTCAAGGCCAACTCAGTCAAGGTTTGTACGGTATAATCAGA
CTATTTGATCAACACATCCTTGCCATGCGTATGTTACGGGAGAATGAGTT
TTAACAACGTTGCCTGATAACACAAGCATTTTTGTTCCAGGTCCCGGGAA
CATACCGAATCCGTCTGGACGTGTCGGCTCCGGGGGAAGCAGAAGGATTC
ACTGAGTGCGTCATCGACATGGACAGCGCGCCTGAGAGTGGCGCATGCGC
CGTACAGCCAGCGTCCGGCACCGCGGAGTTTTCTGTGGTGTGCGAAGGTA
AGGTGCTGGCTACGAATCCTAGTCACTTTGTGAGTCCGAACACTTCAATT
ATGAAAGAAAGAAACCCTGATAACTGATGGTGTATAGGTTCGTGAACTTT
GAAAAGCCGTTTAAAGTCGGTGGGAGCAGATACACTTTTTAGAAGACTAC
ATTGAAGTTCAAATTGAACAAAGTTCAAAGATAAACAGAAGATTTCTTAA
CATCACCCAAGTTCGATGGATAGTTGTTTATGATAAAATATGTTGCACTT
AACTGCATTGCATCATGATAGATCTCTGGACTACATTATTAAACATTGCT
GCTGCGTCATGTAACTGTTGGATTCAAAAGAATACTGACTGCAGAACTGG
AACAGTTGCTTTTTGTATTGAGTTTGCGTTCCCCTTAAACACTTGCAATT
GATATTTAATGTTTTGTTCAACATTGCTTCTGCAGGATTCAGCGATGTGG
ACACGCCGCTGACATACTCGCTCTATCGGCGGTCCGATTCCCACGA Coding sequence (CDS) from alignment at Sc0000112:887665..889560- >transcript:BL97395_cuf4 ID=transcript:BL97395_cuf4|Name=transcript:BL97395_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=3630bp|location=Sequence derived from alignment at Sc0000112:887665..889560- (Branchiostoma lanceolatum)
GCCAGGGCCGTGAGCCGAGAGGAGGACTTGGTACTCAGCGCGGCCGCTTC
CTACGACCCTAACGGCATTGTGACAGAGTCAGCAGGTTTCAACTTTACAT
GGAGTTGCTTGGATGAAAACGGGCGTCCTTGCGGCATATTCACGGACGGA
GGGCGCGGGCCGCAGTACAGGATCCCCCCGGCGTCGTTACCGGTCTCCTC
CAGCGTGTTAAACATTTCGGTAGCGGCGAGTTCCGGCCGGCAAACAGCCC
CGCCCTTCCGGCAGAGAGTCGAGCTGCGTAACGGCACTGTGCTGGAGGTG
GACATCGTAGATTGTAACCAGCGCGCCAATCCTTCTGAGCGGCTCGTGCT
GCTGACGTCATGTCGGAACTGCCCAGCATCCTCCACGGCGTACCAGTGGT
CGCTGTCCGAGAGTCCGCCTGGGGTTCAGATTGGGGAAGCTGACTGGAGC
GGCCTCCTCTCTACCACCAGCACAGCACCCAGCCTGGTTCTCACGGCTAA
CTCACTCAAGGTCCCGGGAACATACCGAATCCGTCTGGACGTGTCGGCTC
CGGGGGAAGCAGAAGGATTCACTGAGTGCGTCATCGACATGGACAGCGCG
CCTGAGAGTGGCGCATGCGCCGTACAGCCAGCGTCCGGCACCGCGGAGTT
TTCTGTGGTGTGCGAAGGATTCAGCGATGTGGACACGCCGCTGACATACT
CGCTCTATCGGCGGTCCGATTCCCACGCCAGGGCCGTGAGCCGAGAGGAG
GACTTGGTACTCAGCGCGGCCGCTTCCTACGACCCTAACGGCATTGTGAC
AGAGTCAGCAGGTTTCAACTTTACATGGAGTTGCTTGGATGAAAACGGGC
GTCCTTGCGGCATATTCACGGACGGAGGGCGCGGGCCGCAGTACAGGATC
CCCCCGGCGTCGTTACCGGTCTCCTCCAGCGTGTTAAACATTTCGGTAGC
GGCGAGTTCCGGCCGGCAAACAGCCCCGCCCTTCCGGCAGAGAGTCGAGC
TGCGTAACGGCACTGTGCTGGAGGTGGACATCGTAGATTGTAACCAGCGC
GCCAATCCTTCTGAGCGGCTCGTGCTGCTGACGTCATGTCGGAACTGCCC
AGCATCCTCCACGGCGTACCAGTGGTCGCTGTCCGAGAGTCCGCCTGGGG
TTCAGATTGGGGAAGCTGACTGGAGCGGCCTCCTCTCTACCACCAGCACA
GCACCCAGCCTGGTTCTCACGGCTAACTCACTCAAGGTCCCGGGAACATA
CCGAATCCGTCTGGACGTGTCGGCTCCGGGGGAAGCAGAAGGATTCACTG
AGTGCGTCATCGACATGGACAGCGCGCCTGAGAGTGGCGCATGCGCCGTA
CAGCCAGCGTCCGGCACCGCGGAGTTTTCTGTGGTGTGCGAAGGATTCAG
CGATGTGGACACGCCGCTGACATACTCGCTCTATCGGCGGTCCGATTCCC
ACGCCAGGGCCGTGAGCCGAGAGGAGGACTTGGTACTCAGCGCGGCCGCT
TCCTACGACCCTAACGGCATTGTGACAGAGTCAGCAGGTTTCAACTTTAC
ATGGAGTTGCTTGGATGAAAACGGGCGTCCTTGCGGCATATTCACGGACG
GAGGGCGCGGGCCGCAGTACAGGATCCCCCCGGCGTCGTTACCGGTCTCC
TCCAGCGTGTTAAACATTTCGGTAGCGGCGAGTTCCGGCCGGCAAACAGC
CCCGCCCTTCCGGCAGAGAGTCGAGCTGCGTAACGGCACTGTGCTGGAGG
TGGACATCGTAGATTGTAACCAGCGCGCCAATCCTTCTGAGCGGCTCGTG
CTGCTGACGTCATGTCGGAACTGCCCAGCATCCTCCACGGCGTACCAGTG
GTCGCTGTCCGAGAGTCCGCCTGGGGTTCAGATTGGGGAAGCTGACTGGA
GCGGCCTCCTCTCTACCACCAGCACAGCACCCAGCCTGGTTCTCACGGCT
AACTCACTCAAGGTCCCGGGAACATACCGAATCCGTCTGGACGTGTCGGC
TCCGGGGGAAGCAGAAGGATTCACTGAGTGCGTCATCGACATGGACAGCG
CGCCTGAGAGTGGCGCATGCGCCGTACAGCCAGCGTCCGGCACCGCGGAG
TTTTCTGTGGTGTGCGAAGGATTCAGCGATGTGGACACGCCGCTGACATA
CTCGCTCTATCGGCGGTCCGATTCCCACGCCAGGGCCGTGAGCCGAGAGG
AGGACTTGGTACTCAGCGCGGCCGCTTCCTACGACCCTAACGGCATTGTG
ACAGAGTCAGCAGGTTTCAACTTTACATGGAGTTGCTTGGATGAAAACGG
GCGTCCTTGCGGCATATTCACGGACGGAGGGCGCGGGCCGCAGTACAGGA
TCCCCCCGGCGTCGTTACCGGTCTCCTCCAGCGTGTTAAACATTTCGGTA
GCGGCGAGTTCCGGCCGGCAAACAGCCCCGCCCTTCCGGCAGAGAGTCGA
GCTGCGTAACGGCACTGTGCTGGAGGTGGACATCGTAGATTGTAACCAGC
GCGCCAATCCTTCTGAGCGGCTCGTGCTGCTGACGTCATGTCGGAACTGC
CCAGCATCCTCCACGGCGTACCAGTGGTCGCTGTCCGAGAGTCCGCCTGG
GGTTCAGATTGGGGAAGCTGACTGGAGCGGCCTCCTCTCTACCACCAGCA
CAGCACCCAGCCTGGTTCTCACGGCTAACTCACTCAAGGTCCCGGGAACA
TACCGAATCCGTCTGGACGTGTCGGCTCCGGGGGAAGCAGAAGGATTCAC
TGAGTGCGTCATCGACATGGACAGCGCGCCTGAGAGTGGCGCATGCGCCG
TACAGCCAGCGTCCGGCACCGCGGAGTTTTCTGTGGTGTGCGAAGGATTC
AGCGATGTGGACACGCCGCTGACATACTCGCTCTATCGGCGGTCCGATTC
CCACGCCAGGGCCGTGAGCCGAGAGGAGGACTTGGTACTCAGCGCGGCCG
CTTCCTACGACCCTAACGGCATTGTGACAGAGTCAGCAGGTTTCAACTTT
ACATGGAGTTGCTTGGATGAAAACGGGCGTCCTTGCGGCATATTCACGGA
CGGAGGGCGCGGGCCGCAGTACAGGATCCCCCCGGCGTCGTTACCGGTCT
CCTCCAGCGTGTTAAACATTTCGGTAGCGGCGAGTTCCGGCCGGCAAACA
GCCCCGCCCTTCCGGCAGAGAGTCGAGCTGCGTAACGGCACTGTGCTGGA
GGTGGACATCGTAGATTGTAACCAGCGCGCCAATCCTTCTGAGCGGCTCG
TGCTGCTGACGTCATGTCGGAACTGCCCAGCATCCTCCACGGCGTACCAG
TGGTCGCTGTCCGAGAGTCCGCCTGGGGTTCAGATTGGGGAAGCTGACTG
GAGCGGCCTCCTCTCTACCACCAGCACAGCACCCAGCCTGGTTCTCACGG
CTAACTCACTCAAGGTCCCGGGAACATACCGAATCCGTCTGGACGTGTCG
GCTCCGGGGGAAGCAGAAGGATTCACTGAGTGCGTCATCGACATGGACAG
CGCGCCTGAGAGTGGCGCATGCGCCGTACAGCCAGCGTCCGGCACCGCGG
AGTTTTCTGTGGTGTGCGAAGGATTCAGCGATGTGGACACGCCGCTGACA
TACTCGCTCTATCGGCGGTCCGATTCCCAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000112 | genome | Sc0000112:887665..889560 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97395_cuf4 |
| Biotype | protein_coding |
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