|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL95708_evm2 >transcript:BL95708_evm2-protein ID=transcript:BL95708_evm2-protein|Name=transcript:BL95708_evm2|organism=Branchiostoma lanceolatum|type=polypeptide|length=235bp
MWIRACLFLLVVLGLVWQSDGWWYVTWSGCSAPYTHGEKCSYRCEPGYTR
VSGSTTRTCSNGAWTGSGLVCRRDSLQCQSIPLYGPLSGLKSSGQVVNGD
TSCNGHPRSSNSAGSVPFFHGTTPLFRRRRDVSEVFIWSPAHRVLMFRGE
VFEWGVGASAWSRMVAWEGRRCPSDCAISWTRSAAGHSTCSREQAEFFAR
EYKSRYGSYNLITNNCHIFVNRLMNYLDSGCTKMP Run BLAST on NCBI mRNA from alignment at Sc0000100:152547..155846+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL95708_evm2 ID=transcript:BL95708_evm2|Name=transcript:BL95708_evm2|organism=Branchiostoma lanceolatum|type=mRNA|length=3300bp|location=Sequence derived from alignment at Sc0000100:152547..155846+ (Branchiostoma lanceolatum)
ATGTGGTATGTTATTGTTGTCCGTTGTCAGCTGCACCCTCTATAGTTTCA
AACTTCATGATGATGTCACTCCATCGATCACCAAGCAGATGTTGGAGTGG
ACAATTGCACAGTTTTCTGACACGCAAAATCCAGCCGGTCACAGAAATTT
GCAATTGTCCACCCAACATCTGCTTGGATATACCATGGCCTACATATGGC
ATCGTTTCCTGGTGACATATTAAGTACAGAAGTACGTTTATCTCCAGGCC
AGCTGGTGAGGAATCTTGCCTCCGGCTGAAACGGCATGGGCTGAACTACT
TGTACCATAGTGCATATCACAGGCAGTTCTAAGTGGTCTTTCAAGTACTG
ATGTATGACTGAACTGAAAGGTTGAGATTTTTCTGGTTCACATTTGCAGA
TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGCGTGTGT
GTGTGTGTGTGTGTGTGTCTAATGTGTATAGTCATTTGAGCGGGTGTATT
GTTTCGGGCACGACTCTGTAAGAATGTTATAGCATCTACATGATAAGTTA
ACCCGCCAAAAAGATACAACCTTAATTTCTGTTCTGGAAGTGGCAAAATG
ATGCTAGAATCTAGCTACAGCTGAAATAAAGCCTTCTAATTTTTCCTAGA
GGAGATATTGCGATAAAAAACAATTCAAGTGACGCGTGGGTATATTTCAT
GCTTGCAATGGATACTTTTGACGCATTTTACCAGCTCAATTTTATCTCAT
ACAGGATTCGAGCGTGTCTGTTTCTGCTTGTTGTGCTCGGCCTTGTCTGG
CAGTCCGACGGATGGTGGTGGGGCCGTCGGAGGCGAAGTAATAAGTGTAC
ACGTTCCAGCATTTTGCATTGACCGGGGCTATTGACATGATGTTGATAAG
GCAAATTTTTGCGCCAGGTTCCTGTCAATAGCCACGACTGAGTTCTGCAT
GTATTTATCTGAATGGGGCATTGTTGTTGAATACTTGAAGGCCTGAACTG
GTAATTTGAGCATGTGTTGTTTAACCATGTACATATTTTTACCTACTTAC
CTTTCTCTCCGTATTAAAGGCTCGACGAGGAACTGTTCTGGACGTCCCTC
CCTTCCCAGGTACGTTACCTGGTCTGGCTGCAGCGCCCCCTACACGCACG
GGGAGAAGTGCAGCTACAGGTGCGAGCCTGGGTACACCCGCGTGTCCGGC
AGCACGACGAGGACCTGCTCTAACGGGGCCTGGACAGGCTCTGGTCTCGT
CTGTAGGAGAGGTACGGGTCTTACGCGATATTTGTCTGGTTGAAGGGACT
TTAAGAACATAATCTAAAGACGGCGAAAAAAGACATATAGTGCCTTCTAA
ATCTCCTTAGAAGTGCAGTTATAATGGTGATTCGAATCTTCATCTTCTAT
TTCCATACAGCTCCCCGTCCAGCACTGACCTACAGGAAATGCACCGGACA
GGTATTGGAGGACTAACCCTAACCCTAACCTTGAGCCTAGCCCTCGCCCC
TAGCCCTATAACTCTAGGCCTAGCTCTAACCTTACCACTACCCCTAACCC
TAACCCTAAACCGCGTACTTTAGATTTATGATAATGACATTTGTGGAGAT
TTACCAAATATATAACACGGAATTACCGAACAAAATTGATGGCGCTACTC
TCACTCGCATTTTCATCACGTTTCGACCATGACTTGAACTAAATCGAGAT
CGTTCTGTGTTCTGTGTAGACTCGCTCCAATGCCAGTCTATCCCACTGTA
CGGTCCACTGTCCGGCCTCAAGAGCTCTGGGCAAGTGGTCAACGGGGATA
CTTCCTGTAACGGCCATCCACGCTCAAGCAACTCAGGTGATTTGAGCTGA
GAGATGCTCGTATATTGAAACATAGGGTATTCTAGGGTCTTCTAGGTGCA
CATTTTTTTAAGACTAAGTCAAGAGTGTTGAATTTGGCAGTGCTGCTATA
TGAAGCCTTTGTATTCACGATTTTAAGTACTATTTGTTTTAATTTGGATA
CCATTCTTTATGCATATAGCTACTATAGAACTTGTTTCAGTAGACTAGTT
GTGGTAGATATTCATCATTTGTCCCACGTGCACCCAGCGGGATCTGTCCC
GTTCTTCCACGGGACGACTCCCCTGTTCCGCCGCCGCCGCGACGTGAGCG
AGGTGTTCATTTGGAGCCCCGCACACCGCGTCCTCATGTTTCGCGGGGAG
GTCTTCGAGTGGGGCGTCGGGGCAAGCGCCTGGTCTAGAATGGTATATGT
TTTTCTTCTGTGTCCACTCTTTCCTATTTGGTTTGTGACAGCTACGTGTA
TATTTTGTTCGTTCCCTTGTCATAATTACACATGCCTTCATTGTCATAGT
CATAATTGTTCAACTCATGGACATTTCATGTCCTCTAGCACATGCCATAG
TGGACTTCACACCATTCTTACCAACGTACATGCTATGAAAGCGCATTGCA
TTGCCGTCTGTATCTTTCGCTGTGATGCTTGATTTTGATACATTGAGGTA
AAGAACCAAGCGTTAACACTGCTATTCCTGATGTAACCGACAGGTGGCGT
GGGAAGGTCGCCGTTGCCCGTCTGACTGTGCCATATCCTGGACCAGGTCT
GCGGCAGGACACAGCACCTGTAGCCGTGAGCAGGTATGGACCACTTGCCA
CTGAATAGTCATTTTGTACGTGCATTGAAGTACCTAATGTTTTGAAAAGA
AACTGACGAAATGTTCCTTTTATTTTGATTAAGACAATCCCAGACATTTG
ATCTAACGTTGATTCTTCACAACTAATGTATATCAAGGAGGTCCTTGTGT
ATAAATACTCGGGTATAGACATGATTTTGGTCATAACGATTTGTTTACCA
TACAGATCTCTGTAGATGGTTTGGATAATGTTGTTTGCTGTTTGTCAAAG
TAAGCGACAAAGGTCCCTAAAGGCTTTTACTCTAATCTGTTTCGCATTAA
TGTAACATCAAGCAACTAGTTTGCTGTTGAGGTTGAAAATGTTTCTTCTG
GTAATGGGCCTAGTCTTTAACATACTGAAAACGGAAATACATAAGACTAT
CGTTAGAACATTGTCTGTACACAGGCCGAGTTCTTCGCCCGAGAGTACAA
GTCTCGCTATGGGTCATACAACTTGATCACCAACAACTGCCATATCTTCG
TCAACCGCCTGATGAACTATCTGGACTCCGGCTGCACCAAAATGCCGTAG
Coding sequence (CDS) from alignment at Sc0000100:152547..155846+ >transcript:BL95708_evm2 ID=transcript:BL95708_evm2|Name=transcript:BL95708_evm2|organism=Branchiostoma lanceolatum|type=CDS|length=4956bp|location=Sequence derived from alignment at Sc0000100:152547..155846+ (Branchiostoma lanceolatum)
ATGTGGATTCGAGCGTGTCTGTTTCTGCTTGTTGTGCTCGGCCTTGTCTG
GCAGTCCGACGGATGGTGGTACGTTACCTGGTCTGGCTGCAGCGCCCCCT
ACACGCACGGGGAGAAGTGCAGCTACAGGTGCGAGCCTGGGTACACCCGC
GTGTCCGGCAGCACGACGAGGACCTGCTCTAACGGGGCCTGGACAGGCTC
TGGTCTCGTCTGTAGGAGAGACTCGCTCCAATGCCAGTCTATCCCACTGT
ACGGTCCACTGTCCGGCCTCAAGAGCTCTGGGCAAGTGGTCAACGGGGAT
ACTTCCTGTAACGGCCATCCACGCTCAAGCAACTCAGCGGGATCTGTCCC
GTTCTTCCACGGGACGACTCCCCTGTTCCGCCGCCGCCGCGACGTGAGCG
AGGTGTTCATTTGGAGCCCCGCACACCGCGTCCTCATGTTTCGCGGGGAG
GTCTTCGAGTGGGGCGTCGGGGCAAGCGCCTGGTCTAGAATGGTGGCGTG
GGAAGGTCGCCGTTGCCCGTCTGACTGTGCCATATCCTGGACCAGGTCTG
CGGCAGGACACAGCACCTGTAGCCGTGAGCAGGCCGAGTTCTTCGCCCGA
GAGTACAAGTCTCGCTATGGGTCATACAACTTGATCACCAACAACTGCCA
TATCTTCGTCAACCGCCTGATGAACTATCTGGACTCCGGCTGCACCAAAA
TGCCGTAGATGTGGATTCGAGCGTGTCTGTTTCTGCTTGTTGTGCTCGGC
CTTGTCTGGCAGTCCGACGGATGGTGGTACGTTACCTGGTCTGGCTGCAG
CGCCCCCTACACGCACGGGGAGAAGTGCAGCTACAGGTGCGAGCCTGGGT
ACACCCGCGTGTCCGGCAGCACGACGAGGACCTGCTCTAACGGGGCCTGG
ACAGGCTCTGGTCTCGTCTGTAGGAGAGACTCGCTCCAATGCCAGTCTAT
CCCACTGTACGGTCCACTGTCCGGCCTCAAGAGCTCTGGGCAAGTGGTCA
ACGGGGATACTTCCTGTAACGGCCATCCACGCTCAAGCAACTCAGCGGGA
TCTGTCCCGTTCTTCCACGGGACGACTCCCCTGTTCCGCCGCCGCCGCGA
CGTGAGCGAGGTGTTCATTTGGAGCCCCGCACACCGCGTCCTCATGTTTC
GCGGGGAGGTCTTCGAGTGGGGCGTCGGGGCAAGCGCCTGGTCTAGAATG
GTGGCGTGGGAAGGTCGCCGTTGCCCGTCTGACTGTGCCATATCCTGGAC
CAGGTCTGCGGCAGGACACAGCACCTGTAGCCGTGAGCAGGCCGAGTTCT
TCGCCCGAGAGTACAAGTCTCGCTATGGGTCATACAACTTGATCACCAAC
AACTGCCATATCTTCGTCAACCGCCTGATGAACTATCTGGACTCCGGCTG
CACCAAAATGCCGTAGATGTGGATTCGAGCGTGTCTGTTTCTGCTTGTTG
TGCTCGGCCTTGTCTGGCAGTCCGACGGATGGTGGTACGTTACCTGGTCT
GGCTGCAGCGCCCCCTACACGCACGGGGAGAAGTGCAGCTACAGGTGCGA
GCCTGGGTACACCCGCGTGTCCGGCAGCACGACGAGGACCTGCTCTAACG
GGGCCTGGACAGGCTCTGGTCTCGTCTGTAGGAGAGACTCGCTCCAATGC
CAGTCTATCCCACTGTACGGTCCACTGTCCGGCCTCAAGAGCTCTGGGCA
AGTGGTCAACGGGGATACTTCCTGTAACGGCCATCCACGCTCAAGCAACT
CAGCGGGATCTGTCCCGTTCTTCCACGGGACGACTCCCCTGTTCCGCCGC
CGCCGCGACGTGAGCGAGGTGTTCATTTGGAGCCCCGCACACCGCGTCCT
CATGTTTCGCGGGGAGGTCTTCGAGTGGGGCGTCGGGGCAAGCGCCTGGT
CTAGAATGGTGGCGTGGGAAGGTCGCCGTTGCCCGTCTGACTGTGCCATA
TCCTGGACCAGGTCTGCGGCAGGACACAGCACCTGTAGCCGTGAGCAGGC
CGAGTTCTTCGCCCGAGAGTACAAGTCTCGCTATGGGTCATACAACTTGA
TCACCAACAACTGCCATATCTTCGTCAACCGCCTGATGAACTATCTGGAC
TCCGGCTGCACCAAAATGCCGTAGATGTGGATTCGAGCGTGTCTGTTTCT
GCTTGTTGTGCTCGGCCTTGTCTGGCAGTCCGACGGATGGTGGTACGTTA
CCTGGTCTGGCTGCAGCGCCCCCTACACGCACGGGGAGAAGTGCAGCTAC
AGGTGCGAGCCTGGGTACACCCGCGTGTCCGGCAGCACGACGAGGACCTG
CTCTAACGGGGCCTGGACAGGCTCTGGTCTCGTCTGTAGGAGAGACTCGC
TCCAATGCCAGTCTATCCCACTGTACGGTCCACTGTCCGGCCTCAAGAGC
TCTGGGCAAGTGGTCAACGGGGATACTTCCTGTAACGGCCATCCACGCTC
AAGCAACTCAGCGGGATCTGTCCCGTTCTTCCACGGGACGACTCCCCTGT
TCCGCCGCCGCCGCGACGTGAGCGAGGTGTTCATTTGGAGCCCCGCACAC
CGCGTCCTCATGTTTCGCGGGGAGGTCTTCGAGTGGGGCGTCGGGGCAAG
CGCCTGGTCTAGAATGGTGGCGTGGGAAGGTCGCCGTTGCCCGTCTGACT
GTGCCATATCCTGGACCAGGTCTGCGGCAGGACACAGCACCTGTAGCCGT
GAGCAGGCCGAGTTCTTCGCCCGAGAGTACAAGTCTCGCTATGGGTCATA
CAACTTGATCACCAACAACTGCCATATCTTCGTCAACCGCCTGATGAACT
ATCTGGACTCCGGCTGCACCAAAATGCCGTAGATGTGGATTCGAGCGTGT
CTGTTTCTGCTTGTTGTGCTCGGCCTTGTCTGGCAGTCCGACGGATGGTG
GTACGTTACCTGGTCTGGCTGCAGCGCCCCCTACACGCACGGGGAGAAGT
GCAGCTACAGGTGCGAGCCTGGGTACACCCGCGTGTCCGGCAGCACGACG
AGGACCTGCTCTAACGGGGCCTGGACAGGCTCTGGTCTCGTCTGTAGGAG
AGACTCGCTCCAATGCCAGTCTATCCCACTGTACGGTCCACTGTCCGGCC
TCAAGAGCTCTGGGCAAGTGGTCAACGGGGATACTTCCTGTAACGGCCAT
CCACGCTCAAGCAACTCAGCGGGATCTGTCCCGTTCTTCCACGGGACGAC
TCCCCTGTTCCGCCGCCGCCGCGACGTGAGCGAGGTGTTCATTTGGAGCC
CCGCACACCGCGTCCTCATGTTTCGCGGGGAGGTCTTCGAGTGGGGCGTC
GGGGCAAGCGCCTGGTCTAGAATGGTGGCGTGGGAAGGTCGCCGTTGCCC
GTCTGACTGTGCCATATCCTGGACCAGGTCTGCGGCAGGACACAGCACCT
GTAGCCGTGAGCAGGCCGAGTTCTTCGCCCGAGAGTACAAGTCTCGCTAT
GGGTCATACAACTTGATCACCAACAACTGCCATATCTTCGTCAACCGCCT
GATGAACTATCTGGACTCCGGCTGCACCAAAATGCCGTAGATGTGGATTC
GAGCGTGTCTGTTTCTGCTTGTTGTGCTCGGCCTTGTCTGGCAGTCCGAC
GGATGGTGGTACGTTACCTGGTCTGGCTGCAGCGCCCCCTACACGCACGG
GGAGAAGTGCAGCTACAGGTGCGAGCCTGGGTACACCCGCGTGTCCGGCA
GCACGACGAGGACCTGCTCTAACGGGGCCTGGACAGGCTCTGGTCTCGTC
TGTAGGAGAGACTCGCTCCAATGCCAGTCTATCCCACTGTACGGTCCACT
GTCCGGCCTCAAGAGCTCTGGGCAAGTGGTCAACGGGGATACTTCCTGTA
ACGGCCATCCACGCTCAAGCAACTCAGCGGGATCTGTCCCGTTCTTCCAC
GGGACGACTCCCCTGTTCCGCCGCCGCCGCGACGTGAGCGAGGTGTTCAT
TTGGAGCCCCGCACACCGCGTCCTCATGTTTCGCGGGGAGGTCTTCGAGT
GGGGCGTCGGGGCAAGCGCCTGGTCTAGAATGGTGGCGTGGGAAGGTCGC
CGTTGCCCGTCTGACTGTGCCATATCCTGGACCAGGTCTGCGGCAGGACA
CAGCACCTGTAGCCGTGAGCAGGCCGAGTTCTTCGCCCGAGAGTACAAGT
CTCGCTATGGGTCATACAACTTGATCACCAACAACTGCCATATCTTCGTC
AACCGCCTGATGAACTATCTGGACTCCGGCTGCACCAAAATGCCGTAGAT
GTGGATTCGAGCGTGTCTGTTTCTGCTTGTTGTGCTCGGCCTTGTCTGGC
AGTCCGACGGATGGTGGTACGTTACCTGGTCTGGCTGCAGCGCCCCCTAC
ACGCACGGGGAGAAGTGCAGCTACAGGTGCGAGCCTGGGTACACCCGCGT
GTCCGGCAGCACGACGAGGACCTGCTCTAACGGGGCCTGGACAGGCTCTG
GTCTCGTCTGTAGGAGAGACTCGCTCCAATGCCAGTCTATCCCACTGTAC
GGTCCACTGTCCGGCCTCAAGAGCTCTGGGCAAGTGGTCAACGGGGATAC
TTCCTGTAACGGCCATCCACGCTCAAGCAACTCAGCGGGATCTGTCCCGT
TCTTCCACGGGACGACTCCCCTGTTCCGCCGCCGCCGCGACGTGAGCGAG
GTGTTCATTTGGAGCCCCGCACACCGCGTCCTCATGTTTCGCGGGGAGGT
CTTCGAGTGGGGCGTCGGGGCAAGCGCCTGGTCTAGAATGGTGGCGTGGG
AAGGTCGCCGTTGCCCGTCTGACTGTGCCATATCCTGGACCAGGTCTGCG
GCAGGACACAGCACCTGTAGCCGTGAGCAGGCCGAGTTCTTCGCCCGAGA
GTACAAGTCTCGCTATGGGTCATACAACTTGATCACCAACAACTGCCATA
TCTTCGTCAACCGCCTGATGAACTATCTGGACTCCGGCTGCACCAAAATG
CCGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000100 | genome | Sc0000100:152547..155846 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL95708_evm2 |
| Biotype | protein_coding |
|
