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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88469_cuf0 >transcript:BL88469_cuf0-protein ID=transcript:BL88469_cuf0-protein|Name=transcript:BL88469_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=160bp
ASFIPFISRDNLSSLKYLTLCIKESLRMYPPVAKVLRELKEPMTFFDGKT
LPQGSTVFISISNLHYNPHVWENPKEFNPLRFAPENSKNRSPYAFLPFAA
GPRNCIGQHFAMNELKTAVALILQRFSLTPDDTLPEPVPQYQLVTRAKPP
GLFLKITPID Run BLAST on NCBI mRNA from alignment at Sc0000091:545274..547932- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88469_cuf0 ID=transcript:BL88469_cuf0|Name=transcript:BL88469_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2659bp|location=Sequence derived from alignment at Sc0000091:545274..547932- (Branchiostoma lanceolatum)
CAGCATCATTCATACCATTCATTTCTAGGGACAACTTATCGTCGCTAAAG
TACCTCACCCTGTGCATCAAGGAAAGCCTGAGGATGTATCCTCCTGTCGC
GAAGGTATTGCGGGAATTAAAGGAACCCATGACTTTCTTCGACGGCAAAA
CGCTACCACAAGGTACACGTTGTCCGCTGGCTATGCATTACTTCTGATGT
TGTCCATACCTAATCATTCAACCAGTTATGCTTCGGTCACATTTCCAAGC
CGGGGCCCGGCCGGGCTGTTTGAGAAAACAAAGAATAAAAGACGCATATC
AAGGATATACATAACATAACGTATGGTAAGGACTAATTTTTCAAAAGTTT
TGTGTGTTTTGTTGTCTTTTATGTCATAGTTTTCGTTCCCACAAGCTGCC
CGGCCGGGCCCCGGTATGGAAATGTGACCCTAGCCTTAGCATGCTATGTG
ACAAGTTGATGCTCACAGCAACATAATGTTCGGGTGTTTCAGGCTCTACT
GTGTTCATTTCTATAAGCAACCTGCACTACAACCCTCATGTGTGGGAGAA
CCCGAAGGTTTGTCTTTTCCCAGTTTCGTTGAATTAATCCTAAATTCGGC
TGAAACAGCTCACGGAACATTTAGAGCTAGCAAAAGTACTGAGTACATAA
GTAGGTGATTTTAAACAAGCCATTGGAGTCACAACCATGTCCACTGTACG
TGCACAATATGACGATGTATGTATATTCACTGTGTGCGCCTTGATGATAT
GGCCTATGTATATCTATATATATAGTCTTCAGCACAATACTTTGAAAATG
AGCCATTATGTATATCTACAAATGCTATTCAGAACAATACTTTGATGAGT
AATCTGTACGTGAAGTAGTTTTTGAAAATAAGCAGGCTCAGTAAGACAAC
CAGTTAAGTTTCTGCCAAACTTGTTCTTTTCATTGTTGTGTTAATCATGT
TGTTTGTTTTGTAGGAATTTAATCCTCTTCGCTTCGCGCCCGAGAACTCG
AAGAACCGAAGTCCGTACGCCTTCCTTCCTTTCGCAGCAGGACCGAGGTA
AAGTGAGATTTAAAAAAAACATTTCAAATGTTAAAACAGTATATACGCAA
CACAAAAGCAGCTAGTTGCTTTGACTTCTGCATGAACTGATCTAATATAT
TTGTCTTTTAAGACAAATATAATGCAAAGTTTGGTTTTTTGAAATAACTC
AACTTTGCATTACAGAAATTTGGTTTCCAACAGGTCAGAAGCAGCTACCG
TTTAATAAACTTTTAACTAGTATGTCTCAGTGAAGATCTGTCTGTGGAGG
AATAACCTGAACGTGTTCATTATCTTTTCTAGGAACTGTATCGGACAGCA
CTTCGCCATGAACGAGTTGAAGACAGCTGTTGCGCTCATCCTGCAGCGGT
TCAGCCTGACTCCTGACGACACCCTACCGGAGCCTGTTCCCCAATATCAA
TTGGTCACACGAGCTAAACCTCCTGGGCTCTTCCTCAAGATCACACCCAT
TGACTGACATCAACGTAATCGCCTGTGACCAAAACTAATTATCGTCAACT
CACATCATTCAGCCAGAGACCCTAAAATCACCACATTGAAAAAAAGGGTG
AACGTGAAGAGAGATTTATAAATCCCAAGGTATGCACACACTTAAGGTAC
TGGGTATCCAGGTGTTTTATTACACTTATTATAGGGTGGACCGACTATTC
TGTCTTCGCAGCCAGGGGCTAAAAATTGGCGGGTCTATTAAAGTCTATTA
GGGTCTGGAGCGGCTGCCTTTCGACGCAACCTCAATACGACATTAATTGC
CCCAGGTTCGGTAATGTGACTGTAGGTTTTGAACCAATCACACCGGGAAG
GACCTAACCCTTTCGATAAGTGAGGTGGTTTTCTAACGTGCTTAGTGTAG
CTCTCCTCAATAAAAAGTCCATTTTTCTGGTGTGGCTGTCTTAGTTTCCA
CGGCGGAATTATGAGGGTTGACTTTTACATTCTGAAATAAACGTTCGGAG
TTACCACAAAGAATAGCATGCATCTAAGATACAAATTTTGATGAAATTTA
ACGAAAAGTACTGCCCTTGGTTGTAGGTTCTTTAATATAGATAAACTTTT
AAAATCAATATAGATATATATTTTAATGCCCGTTAATGAGTTTTTATGTT
GCTTAATTGACAAACTAATGCGGAAATATCAATGAATTGAACGTTAGATC
CAAATTAGCTGGTTCTTAGCTACTAAAAGTCTTAGAGTATGTGTGGCGTC
ACTGTAATGGATTGTACTAACGACCTCATGATGTTTACTCAATAACTGCA
TAGCGATTTATCTGTTGTGTCAGTGATGCTTGTTTTCTTGATAAGCTATC
TTAGCATTCTGTTTGGCGTGATCTGATTACAAGTTAATGCCAGTTTGATA
TAGATCATTCGTAATCCACAGCGTATACCAGTTTTATGTTCTCACCCCAT
GTGATATAGATGGTCAAATACAGTTGTTTCTTTGATTTTGTATTATAGTT
ATCTCGGATTTTTTTCCTATTACTTTTAATTCGACTTATTACTAGCTTAT
TGTGTGGAATGGTGATATGTCACTCCACTGCAATAGATGTGCTGGTGACC
TAAGGATACCTGCATTAAAGAAAATGTTGAAATAAATCTGTTTATAAATT
TGTAAAGAC Coding sequence (CDS) from alignment at Sc0000091:545274..547932- >transcript:BL88469_cuf0 ID=transcript:BL88469_cuf0|Name=transcript:BL88469_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1932bp|location=Sequence derived from alignment at Sc0000091:545274..547932- (Branchiostoma lanceolatum)
GCATCATTCATACCATTCATTTCTAGGGACAACTTATCGTCGCTAAAGTA
CCTCACCCTGTGCATCAAGGAAAGCCTGAGGATGTATCCTCCTGTCGCGA
AGGTATTGCGGGAATTAAAGGAACCCATGACTTTCTTCGACGGCAAAACG
CTACCACAAGGCTCTACTGTGTTCATTTCTATAAGCAACCTGCACTACAA
CCCTCATGTGTGGGAGAACCCGAAGGAATTTAATCCTCTTCGCTTCGCGC
CCGAGAACTCGAAGAACCGAAGTCCGTACGCCTTCCTTCCTTTCGCAGCA
GGACCGAGGAACTGTATCGGACAGCACTTCGCCATGAACGAGTTGAAGAC
AGCTGTTGCGCTCATCCTGCAGCGGTTCAGCCTGACTCCTGACGACACCC
TACCGGAGCCTGTTCCCCAATATCAATTGGTCACACGAGCTAAACCTCCT
GGGCTCTTCCTCAAGATCACACCCATTGACTGAGCATCATTCATACCATT
CATTTCTAGGGACAACTTATCGTCGCTAAAGTACCTCACCCTGTGCATCA
AGGAAAGCCTGAGGATGTATCCTCCTGTCGCGAAGGTATTGCGGGAATTA
AAGGAACCCATGACTTTCTTCGACGGCAAAACGCTACCACAAGGCTCTAC
TGTGTTCATTTCTATAAGCAACCTGCACTACAACCCTCATGTGTGGGAGA
ACCCGAAGGAATTTAATCCTCTTCGCTTCGCGCCCGAGAACTCGAAGAAC
CGAAGTCCGTACGCCTTCCTTCCTTTCGCAGCAGGACCGAGGAACTGTAT
CGGACAGCACTTCGCCATGAACGAGTTGAAGACAGCTGTTGCGCTCATCC
TGCAGCGGTTCAGCCTGACTCCTGACGACACCCTACCGGAGCCTGTTCCC
CAATATCAATTGGTCACACGAGCTAAACCTCCTGGGCTCTTCCTCAAGAT
CACACCCATTGACTGAGCATCATTCATACCATTCATTTCTAGGGACAACT
TATCGTCGCTAAAGTACCTCACCCTGTGCATCAAGGAAAGCCTGAGGATG
TATCCTCCTGTCGCGAAGGTATTGCGGGAATTAAAGGAACCCATGACTTT
CTTCGACGGCAAAACGCTACCACAAGGCTCTACTGTGTTCATTTCTATAA
GCAACCTGCACTACAACCCTCATGTGTGGGAGAACCCGAAGGAATTTAAT
CCTCTTCGCTTCGCGCCCGAGAACTCGAAGAACCGAAGTCCGTACGCCTT
CCTTCCTTTCGCAGCAGGACCGAGGAACTGTATCGGACAGCACTTCGCCA
TGAACGAGTTGAAGACAGCTGTTGCGCTCATCCTGCAGCGGTTCAGCCTG
ACTCCTGACGACACCCTACCGGAGCCTGTTCCCCAATATCAATTGGTCAC
ACGAGCTAAACCTCCTGGGCTCTTCCTCAAGATCACACCCATTGACTGAG
CATCATTCATACCATTCATTTCTAGGGACAACTTATCGTCGCTAAAGTAC
CTCACCCTGTGCATCAAGGAAAGCCTGAGGATGTATCCTCCTGTCGCGAA
GGTATTGCGGGAATTAAAGGAACCCATGACTTTCTTCGACGGCAAAACGC
TACCACAAGGCTCTACTGTGTTCATTTCTATAAGCAACCTGCACTACAAC
CCTCATGTGTGGGAGAACCCGAAGGAATTTAATCCTCTTCGCTTCGCGCC
CGAGAACTCGAAGAACCGAAGTCCGTACGCCTTCCTTCCTTTCGCAGCAG
GACCGAGGAACTGTATCGGACAGCACTTCGCCATGAACGAGTTGAAGACA
GCTGTTGCGCTCATCCTGCAGCGGTTCAGCCTGACTCCTGACGACACCCT
ACCGGAGCCTGTTCCCCAATATCAATTGGTCACACGAGCTAAACCTCCTG
GGCTCTTCCTCAAGATCACACCCATTGACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000091 | genome | Sc0000091:545274..547932 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88469_cuf0 |
| Biotype | protein_coding |
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