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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL74486_cuf0 >transcript:BL74486_cuf0-protein ID=transcript:BL74486_cuf0-protein|Name=transcript:BL74486_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=167bp
MPLRAPVICSKCPSMFPNTSCWLRIMCSNCLSTSAVRLCDFLGCRPSLYD
KCRHSVSSSSGSCMIEDDSNQTEDSDDNDDVIGTVQQPTSHLSRTLRGDH
QDVGGRPGHNLEQGREGPVQATKTKKVCELCNYSCGKCWDCVGIANSFKQ
FLYISTPFISCMITLLW Run BLAST on NCBI mRNA from alignment at Sc0000037:876646..880813- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL74486_cuf0 ID=transcript:BL74486_cuf0|Name=transcript:BL74486_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4168bp|location=Sequence derived from alignment at Sc0000037:876646..880813- (Branchiostoma lanceolatum)
CAACAATGATAACTTTAGATAGAATATACATGTATGACGTTGTTGCTGCT
GGTATAAGGGCTGGCTAAAACAATTTCTCATATATTGTAGAGAAAATGTA
GTATCTTTGCAACTCGAAATTTAGAAGATTCTCCATTATTCCAAGTGTCC
CAGCTCAGATGATATACTCCTCGGAGGTGTCTGAGTTCCTGGACTCGCTG
TCGAACACGGAATCATCTATCCTGGTGGAAACCATCCCACCTACTCCAGG
TCTCTGCTGTACATTACTGATCACATAGTCTTGGGCTGGTCTTCTTCTGT
CTTTCCCAGAACTCAGTTTCCTGGAGATGACATTCAAAATACCCATCCCT
GGAGACAGCCTGCCGGGACTTCCTTTACTTGAAGACACGCTGCTTTGTTG
CGGATTTTTGTTCCTCCTAAGGCTTGAGTCTCCCTTTGTTTTGTTGTGAG
CAGCCTTAGACTTGGCTGGGACAAATCCAGGGTCTGTCAGATAGCTAATG
TCGTGTATGACGTCAGCATTGAGGCTTGGGCCATTGATGCGGTCATTCTG
ACGATCAGAAGGTGTTTTGGTCAACTGTCCGAGCTTGCGAACGGTAGCCA
GCGAGTTCTTACTCTTCTTTGGTTGGTTAGTTGGCATGGTAGCACCTCTC
CTTGCTTCCTGAAGCTGTTTTATCATCTGCAGGTCTTCAGCTGTCACCGT
ATCGAGTGGCAACAAGAGGTCCAGCCCTCTCTTACCCGAAGTTGCACTCG
GGGAAAGAGACGCATTGGAGCTACTACCCGTGGGAGAGTTGACAGAACTG
CTCTGCGAACGACCCTGCTTCCGCCGCATCCGGCTACTCGTACTTTCATG
TTGTGGACTGGGAGAAGCCGATATCTCCGCCTGTATCCCCTGGTCTACGT
GATGGGGCATGGCGTCGGTCTGCGTGCCGTTATCGCTGTGCGGTTGAGCG
CCAAAGAGGAGCGAGCTGGTCAGCTTCAGCATGGTGGACTTCTTCTTCAA
GGTATCTGAACTCTCCTTCACTTCACTTTCCACTACCTGCAGGGATGGTA
ATTATTGTCAGACACTCTTATTATCCTGTAGCGAAGCTGAAGCTTGAAAA
ATAATGTTGAAAAATATACAACTTTTGAAGTTATGTGGCAGCTGCCAAAA
GGTACACTTTTCCTGATCACACTAGCTTTCAAAGTCTTCTTTTAGTTTTT
TAATTCATTGTTGTTCCAATGTCCTGAGTGGTTTAAATAATCCTACCAAG
TTATTACCTTTGCTGTTCTTGATTTTTTTGCATGTCTTTCGTGTGATTTG
TTTTTGTCTTGCTTGAGTGTGTAATTTTCTTTTCTACACAATGTCTGTTT
TGTCCCTAACAAATTTGTTTTGTCCCTAACAAAATTACAGTAGAAAACAA
CAACAGCAACAACAAATATAATTGTAATACTGTATTCTGTTGTCTTCTGT
AGAGTTCGTACTGACTTCCAGTTTATGTAACAGTCCCCTTGCCACTCACC
TGCAGGTGTGAGAGGATGCCCCTCAGAGCTCCAGTCATCTGCTCCAAGTG
TCCCAGCATGTTCCCGAACACCTCGTGCTGGTTACGCATCATGTGTTCAA
ACTGTCTCTCCACCAGCGCCGTCAGACTGTGCGACTTCCTGGGATGTCGG
CCATCTTTGTACGACAAGTGTAGGCATTCAGTATCGTCGTCATCTGGAAG
TAAGATTTGAAGATTATAGATTGATTCCGCATTTGGAGGAACGGCATTCA
ATTGAACATTTTCAAGACATGCTTATGAGGTATGAGCTATTTTTCTAATG
ATAGAAACTGTCTTCTGATGTTGGTGTCATGTGATGTTTATGTAATTGTT
TTCCATAAAATGTTGGGGCTTACTCTACAGTATCACTGTGTATGTAGTTC
TGTGTAACTTTCCTAATCAATCAAGTATCACCAAAAATCATCTCTACTAC
CAGGTGCAGTATTATGTCACATTTCCCTCTTACCCCCAACTGGTAACCCT
AAAGAGATAGACGGTTCATTCAATTTCTTATTAGATCTTTCTGCATTCTT
TTATGACTATACTTATCTCTTGTACAAAATTGTTTTTTCCCTATCCTCCT
GGTTCAGTTGCCCCTCAATTTAATCTCAACCCGGGTACCAGTGGTCTTTC
TATAACTTGATAGATTTTTAATCCTAACATGTACAGCTTCTCACCCCAGT
CCCAGTCTGTCCGCTGCTTTGTAGATGAGACTAGATACCGCTGTATAACC
TGCTGATGGGCAATCTGATAAGACAAAACGTTTAGAGCAAACGGTTGGTA
CATGAATGTGTAACCTCTATCTTCTACCTCTAATACACAATGTCTATTCA
GAGTATAAAAAGGCTTTGTACATATTTGTTTTGGAAGGAAGACACAATAT
TTTGCATGCTCAAAATGATGTCAGTCAACAATTTGTTTAATTACATGGTA
AGTTTTCTTCTTCCCTGTTCATTCTTGCTGACATGAACATTTAATGGGGT
TTTCCTGTGTAATCATAAAAGATAGTTCCAGGAAAAAGTCTGTATCACTA
CACTGAATCTTACCTGATAAGTTCTCTCTGACTGCCCAGGTAGGTTTTCT
GTGATGTCCTCACCAATCTCCACATCAGCACCTGACATCTCTTGGGTCTG
AACCAAAAAAATACAAAAATTATACATGTAGCCATCACTAAGGTGACATC
ATAACATTTTCATTGTTTTTAAGAGATCTTTAAGATGAATGGAAATCAAC
CCAAGAATTTGTTTGTAATGAGTCTTAGCCCTCACAGTAAACCACTGTAG
ACTCTTTTTTATTTTCACTGAACATGGCAAAGAGTTACATTTTTGCATCA
AATCTTTGCAGCAATACTTTGACAAGACTTTAAAAAGAAATTTATGATTA
AAAGTCTTGCTTGGTCTTAAGAGCAAAAAAAGCTTGTATCGGTAAAATTA
GTTTTCAATATAAACATGATAATTCAAAACAAGCTTAATGATTATGAGAC
TTACTAAATCAAAAATTATCAGATTTTGATGTCCATACCTTCCTTTTATT
ACAGCAGCAGCATAAGTGCTTGTAGACAGCCAGTGCAGCGTACCACACTG
ACTTGGGGGTGGGCACCAGGTTCAGGGGGGGTGGGAGGGTTCCTCTCCAG
ATGAAGGACAGGTACACCTTGGCCTGAGCAAACTTCAGCTGGGTCTTGTA
ATCACCCTGTAACAATTTTAAGTTATTCTAATTTACAATGTGTATTCAAA
GCTGACTACTAGTGGCCCTCTATGAGGGCCTGCATGGGGGGGGGGTCCTG
ACAACGCTCTACGCTAAATTCGGAGGGCCGGCTACGTAATACGCTAAATT
CAGAAAGCCTCCCTACGCTCTGCGCTAAATTCAGAAAAGCCTCCCTACGC
TCTACGCTAAATCATGGAGTGGTCGGCAACGCTCTACGTAAAATTGAAAC
GGCCGATTACGCTCTACGTAAAAGGGGCACGCAGGCCCTCCTCTATGCAC
AAGGACCTACGTAAAAGGGGCACGCAGGCCCTCCTCTATGCACAAGGACC
TCTTTTGTTGTCACTTTTTGACCTATTAACCCAGTAAAAGGTATAATGAT
CAATAATATCAATGTTGAGAGAGCAGCTACTTTAAAAGAAAATAGAGGAT
TACAGCACTTTCTTGTTGTTATCAAAATAGAAAAATGCAATGTCAAAGAA
AATTTATGATATTTCTTTACACTGACATTCTTACCTTCTCATCACTGCAG
GTTGCATGATTGAAGATGACAGCAATCAGACTGAAGACAGCGATGACAAC
GATGATGTAATAGGAACCGTACAGCAGCCAACCAGTCACCTCAGCAGAAC
TCTCAGAGGAGACCACCAGGATGTTGGTGGGAGACCCGGTCACAATCTGG
AGCAGGGAAGAGAAGGTCCTGTCCAAGCTACAAAAACAAAAAAAGTTTGT
GAACTTTGTAACTATAGCTGTGGTAAATGTTGGGACTGTGTAGGGATAGC
CAATAGCTTCAAACAGTTTTTGTACATTTCCACACCTTTTATCTCATGTA
TGATAACACTGCTTTGGTAGAAATCTCTGCTATATTCAGCTTCAACAGTT
CTCAAAAATAGGTGCTGAATTGTATTATTTCATGTGGTTAAACAACCAAG
ATATACTTTTGCTGCCAG Coding sequence (CDS) from alignment at Sc0000037:876646..880813- >transcript:BL74486_cuf0 ID=transcript:BL74486_cuf0|Name=transcript:BL74486_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1008bp|location=Sequence derived from alignment at Sc0000037:876646..880813- (Branchiostoma lanceolatum)
ATGCCCCTCAGAGCTCCAGTCATCTGCTCCAAGTGTCCCAGCATGTTCCC
GAACACCTCGTGCTGGTTACGCATCATGTGTTCAAACTGTCTCTCCACCA
GCGCCGTCAGACTGTGCGACTTCCTGGGATGTCGGCCATCTTTGTACGAC
AAGTGTAGGCATTCAGTATCGTCGTCATCTGGAAGTTGCATGATTGAAGA
TGACAGCAATCAGACTGAAGACAGCGATGACAACGATGATGTAATAGGAA
CCGTACAGCAGCCAACCAGTCACCTCAGCAGAACTCTCAGAGGAGACCAC
CAGGATGTTGGTGGGAGACCCGGTCACAATCTGGAGCAGGGAAGAGAAGG
TCCTGTCCAAGCTACAAAAACAAAAAAAGTTTGTGAACTTTGTAACTATA
GCTGTGGTAAATGTTGGGACTGTGTAGGGATAGCCAATAGCTTCAAACAG
TTTTTGTACATTTCCACACCTTTTATCTCATGTATGATAACACTGCTTTG
GTAGATGCCCCTCAGAGCTCCAGTCATCTGCTCCAAGTGTCCCAGCATGT
TCCCGAACACCTCGTGCTGGTTACGCATCATGTGTTCAAACTGTCTCTCC
ACCAGCGCCGTCAGACTGTGCGACTTCCTGGGATGTCGGCCATCTTTGTA
CGACAAGTGTAGGCATTCAGTATCGTCGTCATCTGGAAGTTGCATGATTG
AAGATGACAGCAATCAGACTGAAGACAGCGATGACAACGATGATGTAATA
GGAACCGTACAGCAGCCAACCAGTCACCTCAGCAGAACTCTCAGAGGAGA
CCACCAGGATGTTGGTGGGAGACCCGGTCACAATCTGGAGCAGGGAAGAG
AAGGTCCTGTCCAAGCTACAAAAACAAAAAAAGTTTGTGAACTTTGTAAC
TATAGCTGTGGTAAATGTTGGGACTGTGTAGGGATAGCCAATAGCTTCAA
ACAGTTTTTGTACATTTCCACACCTTTTATCTCATGTATGATAACACTGC
TTTGGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000037 | genome | Sc0000037:876646..880813 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL74486_cuf0 |
| Biotype | protein_coding |
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