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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96281_cuf1 >transcript:BL96281_cuf1-protein ID=transcript:BL96281_cuf1-protein|Name=transcript:BL96281_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=315bp
VTALYQTAGSVTSVEAVQQSCITMKAITEKSSEVSPDTQVTAASAVENMA EKLKSVDVSEELSENIENTATELVSSLSNILVATDATVQEKIKTGTEEAV DVMSLSPEEAEQRERDLQASQETQQEDETMAKDTARQVSTKTFKAATAIS GLVMKTKTIGSPALVIDSPKLSMVLERSEPTALAGKAVTARGGSFNIPAA ISAKLGEGSGPVDMKVMSLPTNPFIWDESASSINSPVVSLAFQGSDGNEL AMDDMEEPFEIRINNSPEKVPIPRRFDPPSPPDESEEENFYYDYEPAADM DYAFHVIDVPRSDNA Run BLAST on NCBI mRNA from alignment at Sc0000036:1817321..1822182+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96281_cuf1 ID=transcript:BL96281_cuf1|Name=transcript:BL96281_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4862bp|location=Sequence derived from alignment at Sc0000036:1817321..1822182+ (Branchiostoma lanceolatum) GGTAACTGCGCTATACCAGACCGCAGGTTCCGTCACCAGTGTGGAAGCTG
TGCAGCAGTCGTGCATCACCATGAAAGCTATCACAGAAAAATCCTCTGAA
GTATCTCCTGATACCCAGGTATGCAGCTTTCTGTTTAAGAGTGAAAGTGA
ACCGGTTTATCTCAATGAAGCGCTATTCTTTCACTGGTCGTGACAGAGAA
GACAGACGCTATGTATTGTATGTACAGGTTCATTGTACCGGGGAGATTCC
CTTGCTCTTTACGACAAGTACAATGAAGAGTGGACCACGGCTTTACGTCC
CGTCCTATGGACTGTGACCCTTTTCAGTAGCGTGCATGTCGGGTGAGCGA
CACAGTCAGGGTTCGAGCTCACGGCTTCTTGGTGCAGAGGCAGGGACGCT
AACCACTGGGCTACGAATGCTGATATTTAAGAGCTAGTTATAAAGAGATA
CATTTGGTTATATTCTTCAAGACATATATGAACCCATAGGCCACCCTGCC
GCCAGCGTGATTGCATGTATAATGGTCATGTGTGTTTTTCAGGTCACAGC
AGCCTCGGCTGTGGAGAATATGGCAGAGAAATTAAAGTCGGTTGACGTGT
CTGAGGAACTCTCTGAGAATATCGAGAATACAGCAACAGGTACCAGACAT
CGTACATTTAGCCTCTATTCATCCTTGTTAAAAACACAATTCATTCTAAA
ATAATCGTATGCACAGTTAAACGTGTGCTCCATTGAACATGTATTTGCTG
TGTTTGGTTGATGACATTGAAACACTGATATATTCAGTCACACCAAGTTT
GTGTCTAGTCAGAAGATTGTTCTGCATCTTTAGTCATGAGACGATATAAC
TCTAGTAAATAAACCTCAAGCCTGTATTGACTTACCGTTGCATCTCTCAT
ACTGGGGCAATATTTTGTCAACAAGACGTTGTTGGTCATTTGTAATAATG
TAGAATATGGCGTTTGATCTTTAACATAATCAAGAAAGTATAGAATATTG
AATGTTCTATACAGTCATTTGGAACCGCATCATCTCACCATTGTTGCTTA
ACAGTATCTTTTAATGTAACAATACTTTACATTTGGAACCGCATCATCTT
ACCATTGTTGCTTAACAGTATCTATTAATGAAACAATACTTAACGTTTGG
GACGGTATTGCTAGCAGTAACACCTAGCTTCAGTGCACTGTGAACTAGTC
AGTATTGAATGTTCTGTTTCAGAACTTGTGTCAAGTCTTAGCAACATCTT
GGTTGCCACGGATGCGACAGTACAAGAGAAGATCAAAACTGGAACAGAAG
AAGCTGTGGACGTGATGTCGTTAAGCCCAGAAGAAGCTGAACAAAGAGAA
CGCGATTTACAAGCATCTCAAGAAACACAGCAAGAGGACGAAACGATGGC
AAAAGATACAGTAAGACTACTTAACCCTCAAACCACCGTAGCTTTTTTAC
GACGAATCTTACCGTATGGGGTCAAAACTGACCCCACAATATTTTCTACA
AATATAGCTTTATTGGTGCCTATTTTTGTGGCTTGTATATTTGTATAGTT
TAAGTAATCTATAAGGGACAGTTTGACATGATTAGATGTGAATAATTTTT
GCTCATTATCATAATTTATGCAAAAATAGGGAACATCGTCTTTTGCAACT
AACGCTATTCAGACAAGCGGGCTCTTTTGAGGCCTGCGCCAACACTTGAT
GTCATATAGCATCTGAATGGCTTACGCTAGAACAACCAAACTTGGTCACC
TTTGCTAAAATTTCGTTGGCAACAATTTAACTTTAATGAAATATCTAATC
AATGTTTTCATGTTGCTATGGAAACCAATTTTTTAGAGCCATATTTGGAA
AAAGTCGCTAATTTTGGATTTTACAATGTAATTCTAGGGCTGTCTTTTTA
AATTACATTTATTTTCTTACATCAATACCAACCAACTTAATTCACTATCA
CTTGTATGATTTAATATTCATAATTTATGCATATTTGATTACGTCATCGG
TCAAAATCTAAAATGGCGGACGATATAATTAGATTAGCTGTAACTGGCTA
TTTTAACCCCAANATCATGACCATATTTATTCAAACAGAAACAATCTTAG
TATAATCGTTTTGGGCCATTTTCATTGTGATATTAGGTTATATGATGAAA
AAATGCATTTAAAATAATTCAAGATGGCGGAACCAAGATGGCGGATTTCG
CTAGTGTAACTTGATATGAATATAATTTCTATGACGTCATTTTGACGTCG
TTCCTATTGTCATCTACAAATAACGTCTTTGGATACATCATGATTTATCA
TACAAAATTTCTATTTAAGTTTTATCGCGTACCTTTGAATAATACGGAAA
TACCAAATTTGTTGGTTTTCGTCAATAAAATCACATAAATGACGTCATAA
TACGTCGCAACGTCATTAATCTTTACGTACATTTAAAAAAAAATTGCTTT
TTTACGTTTCTACAAAATTATATTTTGACACTATGATCATAATAACCCTT
ATCATACATGTTTCTAGATGACAAGTATCAAACAATAGGGAATATGAGTG
CAGATTTTGCTGGGGTCAGTTTTGACCCCACTGGACCATGCGTAAACTTT
CTACCATAACTTAATCAACAATGAGCCAATCTCAGTAAAAACTTGTGAGA
AGTTATAAGACATATATACAAACAAACTCATAGAAGGAATTTTGTTTTCG
ACTCGAAATGTCAAAATGGCACATGTTGATGTACGCCTGGGGTCAGTTTT
GACCCCATACGGTGGTTTGAGGGTTAACAGAAGCGCCAGAAATAGTTACT
CAAGCAACTTGATAAAATTTCGAAACAGACGTTTCAGACAGCTTCTGCTA
TCTTTCGTCAGTGACTAAGGAAAAATCATCAATAGAACCATCTGAAATTG
TCTTCACTTCATTAACATATCTATTCAGAATTTTAGTATAAAACCTAGTT
CTGCAAGATCTTTCCTTAGTCACTGACGAAAGAATGCGGATGCTGTCTGA
AACGTCTGACTGTTTCGAAATTTGCCTGAAGTCCAGTTGCTTGAGTTACT
ATTTTTGGCGTATCTTATTACCTGGATGTCAAACATTCATCAACGTACTT
TACAGAATATGTAGTATAACTTTCAATCTTCCGGTAAACTTTCTGCAATC
CTTAAACAATAACAAACATATCAAAATAACACATGTTCATATTTCTCTAG
GCTAGACAGGTCTCAACGAAGACATTCAAAGCTGCAACAGCAATATCAGG
CTTAGTTATGAAGACGAAGACCATTGGATCCCCGGCATTGGTGATTGACT
CGCCGAAGCTGTCCATGGTGTTGGAAAGGTCTGAGCCTACTGCCTTAGCT
GGTAAAGCTGTAACAGCTCGCGGGGGATCCTTCAACATCCCTGCAGCCAT
CTCAGCTAAACTGGGCGAGGGTTCTGGTCCGGTTGACATGAAAGTAAGAT
ATCATATAAAATCACGAGCTAAGTATGATAATAATAAAAGAAATTGTTGA
AGAGATTCACCAGTCACGTATAATCACAGTTACTAAAATGTTCCTCAGTT
ACATATTTTAAAGGCAACATACACGTACCTCCAAATTTTCGACGTCCACT
GTATGTCTTGTTCACGGAGTGACCTAGTCTCGCGACAACACGAGACTAGG
ACGAGACTTGCGTAGATATTCCGGCCTCCCCCGCCTCCTTACAGAGCAGA
AATAAAGGAAATGTTGATAGAAGAAATGTGATACACGTATGTTTTGATAC
AACCCATATAAGAAGAATGTCTTTCATTGCGAAGTTTTGCTTATCAAAGT
TGGTCAAAGGTAAGGGAATTTTGAAACAATTTTGATCAATCATATCACAC
TTGAATCTGCGTACATTGACGGATGGCTAACATGAATTACAAGAAGAAGA
AGAAGTGTGGATGTCACTCGAAATTTTCATATTTTCATATTTTATCCAGT
TGCAGAGTTTGAATCGTCTTTATACATAACAAAGACCGTACCTAATTCTT
TTACGACGGTTAAGCTGATCAAATTCAAATCTAACTTGATTGAGTATGGC
GATATTGATAAAACGTTACACCAGCGTTAAACGTTACCTCTACTATGCAT
ATTGACAGTTATGTTTGGTGATGCATCCAGGTTATGTCTTTGCCGACCAA
TCCATTTATATGGGACGAAAGTGCCAGTTCCATAAACAGTCCCGTCGTGT
CACTGGCGTTCCAAGGCTCTGATGGCAATGAACTTGCCATGGATGATATG
GAGGAACCATTCGAGATTAGGATCAACAACAGTCCAGAAAAGGTATGATT
TACTTTGTTTTTGCTTTCGTAGATTTAAAACTTATTTAGGAAATCCATCA
TATCTACCATTGGTTAAAAGTTAATCTGTGTTCCACTTGGTAGAAATTAT
TCTGAAAGAAAGTTGAACTGTAATTTCCAACACGCAAATTGTGTTGAAAA
TTACAGTTCAACTATGCTTCAGAAAATATAACTTTTGAAGATAATGACGC
CCCATTCACAAGCGGCGATGGTAATGATGATGATGATGATGATGATGATA
ATGATGATGATGATGAAGATGACGACGATGATGATGATGATGATGATGAT
GATGATGATAATGAGCTATTTCATTACATCGAGCGGTGAAAAAAGGGCTG
ACCATACGAAGTACTTAAAAGTACCACTCATCAGGTGTGGAGAACTGAAG
AATAATTTTCCCTACACCACAGGTTCCCATTCCTCGAAGATTTGACCCAC
CAAGTCCGCCGGATGAGTCGGAAGAGGAAAACTTTTACTACGATTACGAA
CCAGCAGCTGACATGGACTACGCCTTTCACGTGATAGACGTACCAAGAAG
TGACAACGCTAT Coding sequence (CDS) from alignment at Sc0000036:1817321..1822182+ >transcript:BL96281_cuf1 ID=transcript:BL96281_cuf1|Name=transcript:BL96281_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=5670bp|location=Sequence derived from alignment at Sc0000036:1817321..1822182+ (Branchiostoma lanceolatum) GTAACTGCGCTATACCAGACCGCAGGTTCCGTCACCAGTGTGGAAGCTGT GCAGCAGTCGTGCATCACCATGAAAGCTATCACAGAAAAATCCTCTGAAG TATCTCCTGATACCCAGGTCACAGCAGCCTCGGCTGTGGAGAATATGGCA GAGAAATTAAAGTCGGTTGACGTGTCTGAGGAACTCTCTGAGAATATCGA GAATACAGCAACAGAACTTGTGTCAAGTCTTAGCAACATCTTGGTTGCCA CGGATGCGACAGTACAAGAGAAGATCAAAACTGGAACAGAAGAAGCTGTG GACGTGATGTCGTTAAGCCCAGAAGAAGCTGAACAAAGAGAACGCGATTT ACAAGCATCTCAAGAAACACAGCAAGAGGACGAAACGATGGCAAAAGATA CAGCTAGACAGGTCTCAACGAAGACATTCAAAGCTGCAACAGCAATATCA GGCTTAGTTATGAAGACGAAGACCATTGGATCCCCGGCATTGGTGATTGA CTCGCCGAAGCTGTCCATGGTGTTGGAAAGGTCTGAGCCTACTGCCTTAG CTGGTAAAGCTGTAACAGCTCGCGGGGGATCCTTCAACATCCCTGCAGCC ATCTCAGCTAAACTGGGCGAGGGTTCTGGTCCGGTTGACATGAAAGTTAT GTCTTTGCCGACCAATCCATTTATATGGGACGAAAGTGCCAGTTCCATAA ACAGTCCCGTCGTGTCACTGGCGTTCCAAGGCTCTGATGGCAATGAACTT GCCATGGATGATATGGAGGAACCATTCGAGATTAGGATCAACAACAGTCC AGAAAAGGTTCCCATTCCTCGAAGATTTGACCCACCAAGTCCGCCGGATG AGTCGGAAGAGGAAAACTTTTACTACGATTACGAACCAGCAGCTGACATG GACTACGCCTTTCACGTGATAGACGTACCAAGAAGTGACAACGCTGTAAC TGCGCTATACCAGACCGCAGGTTCCGTCACCAGTGTGGAAGCTGTGCAGC AGTCGTGCATCACCATGAAAGCTATCACAGAAAAATCCTCTGAAGTATCT CCTGATACCCAGGTCACAGCAGCCTCGGCTGTGGAGAATATGGCAGAGAA ATTAAAGTCGGTTGACGTGTCTGAGGAACTCTCTGAGAATATCGAGAATA CAGCAACAGAACTTGTGTCAAGTCTTAGCAACATCTTGGTTGCCACGGAT GCGACAGTACAAGAGAAGATCAAAACTGGAACAGAAGAAGCTGTGGACGT GATGTCGTTAAGCCCAGAAGAAGCTGAACAAAGAGAACGCGATTTACAAG CATCTCAAGAAACACAGCAAGAGGACGAAACGATGGCAAAAGATACAGCT AGACAGGTCTCAACGAAGACATTCAAAGCTGCAACAGCAATATCAGGCTT AGTTATGAAGACGAAGACCATTGGATCCCCGGCATTGGTGATTGACTCGC CGAAGCTGTCCATGGTGTTGGAAAGGTCTGAGCCTACTGCCTTAGCTGGT AAAGCTGTAACAGCTCGCGGGGGATCCTTCAACATCCCTGCAGCCATCTC AGCTAAACTGGGCGAGGGTTCTGGTCCGGTTGACATGAAAGTTATGTCTT TGCCGACCAATCCATTTATATGGGACGAAAGTGCCAGTTCCATAAACAGT CCCGTCGTGTCACTGGCGTTCCAAGGCTCTGATGGCAATGAACTTGCCAT GGATGATATGGAGGAACCATTCGAGATTAGGATCAACAACAGTCCAGAAA AGGTTCCCATTCCTCGAAGATTTGACCCACCAAGTCCGCCGGATGAGTCG GAAGAGGAAAACTTTTACTACGATTACGAACCAGCAGCTGACATGGACTA CGCCTTTCACGTGATAGACGTACCAAGAAGTGACAACGCTGTAACTGCGC TATACCAGACCGCAGGTTCCGTCACCAGTGTGGAAGCTGTGCAGCAGTCG TGCATCACCATGAAAGCTATCACAGAAAAATCCTCTGAAGTATCTCCTGA TACCCAGGTCACAGCAGCCTCGGCTGTGGAGAATATGGCAGAGAAATTAA AGTCGGTTGACGTGTCTGAGGAACTCTCTGAGAATATCGAGAATACAGCA ACAGAACTTGTGTCAAGTCTTAGCAACATCTTGGTTGCCACGGATGCGAC AGTACAAGAGAAGATCAAAACTGGAACAGAAGAAGCTGTGGACGTGATGT CGTTAAGCCCAGAAGAAGCTGAACAAAGAGAACGCGATTTACAAGCATCT CAAGAAACACAGCAAGAGGACGAAACGATGGCAAAAGATACAGCTAGACA GGTCTCAACGAAGACATTCAAAGCTGCAACAGCAATATCAGGCTTAGTTA TGAAGACGAAGACCATTGGATCCCCGGCATTGGTGATTGACTCGCCGAAG CTGTCCATGGTGTTGGAAAGGTCTGAGCCTACTGCCTTAGCTGGTAAAGC TGTAACAGCTCGCGGGGGATCCTTCAACATCCCTGCAGCCATCTCAGCTA AACTGGGCGAGGGTTCTGGTCCGGTTGACATGAAAGTTATGTCTTTGCCG ACCAATCCATTTATATGGGACGAAAGTGCCAGTTCCATAAACAGTCCCGT CGTGTCACTGGCGTTCCAAGGCTCTGATGGCAATGAACTTGCCATGGATG ATATGGAGGAACCATTCGAGATTAGGATCAACAACAGTCCAGAAAAGGTT CCCATTCCTCGAAGATTTGACCCACCAAGTCCGCCGGATGAGTCGGAAGA GGAAAACTTTTACTACGATTACGAACCAGCAGCTGACATGGACTACGCCT TTCACGTGATAGACGTACCAAGAAGTGACAACGCTGTAACTGCGCTATAC CAGACCGCAGGTTCCGTCACCAGTGTGGAAGCTGTGCAGCAGTCGTGCAT CACCATGAAAGCTATCACAGAAAAATCCTCTGAAGTATCTCCTGATACCC AGGTCACAGCAGCCTCGGCTGTGGAGAATATGGCAGAGAAATTAAAGTCG GTTGACGTGTCTGAGGAACTCTCTGAGAATATCGAGAATACAGCAACAGA ACTTGTGTCAAGTCTTAGCAACATCTTGGTTGCCACGGATGCGACAGTAC AAGAGAAGATCAAAACTGGAACAGAAGAAGCTGTGGACGTGATGTCGTTA AGCCCAGAAGAAGCTGAACAAAGAGAACGCGATTTACAAGCATCTCAAGA AACACAGCAAGAGGACGAAACGATGGCAAAAGATACAGCTAGACAGGTCT CAACGAAGACATTCAAAGCTGCAACAGCAATATCAGGCTTAGTTATGAAG ACGAAGACCATTGGATCCCCGGCATTGGTGATTGACTCGCCGAAGCTGTC CATGGTGTTGGAAAGGTCTGAGCCTACTGCCTTAGCTGGTAAAGCTGTAA CAGCTCGCGGGGGATCCTTCAACATCCCTGCAGCCATCTCAGCTAAACTG GGCGAGGGTTCTGGTCCGGTTGACATGAAAGTTATGTCTTTGCCGACCAA TCCATTTATATGGGACGAAAGTGCCAGTTCCATAAACAGTCCCGTCGTGT CACTGGCGTTCCAAGGCTCTGATGGCAATGAACTTGCCATGGATGATATG GAGGAACCATTCGAGATTAGGATCAACAACAGTCCAGAAAAGGTTCCCAT TCCTCGAAGATTTGACCCACCAAGTCCGCCGGATGAGTCGGAAGAGGAAA ACTTTTACTACGATTACGAACCAGCAGCTGACATGGACTACGCCTTTCAC GTGATAGACGTACCAAGAAGTGACAACGCTGTAACTGCGCTATACCAGAC CGCAGGTTCCGTCACCAGTGTGGAAGCTGTGCAGCAGTCGTGCATCACCA TGAAAGCTATCACAGAAAAATCCTCTGAAGTATCTCCTGATACCCAGGTC ACAGCAGCCTCGGCTGTGGAGAATATGGCAGAGAAATTAAAGTCGGTTGA CGTGTCTGAGGAACTCTCTGAGAATATCGAGAATACAGCAACAGAACTTG TGTCAAGTCTTAGCAACATCTTGGTTGCCACGGATGCGACAGTACAAGAG AAGATCAAAACTGGAACAGAAGAAGCTGTGGACGTGATGTCGTTAAGCCC AGAAGAAGCTGAACAAAGAGAACGCGATTTACAAGCATCTCAAGAAACAC AGCAAGAGGACGAAACGATGGCAAAAGATACAGCTAGACAGGTCTCAACG AAGACATTCAAAGCTGCAACAGCAATATCAGGCTTAGTTATGAAGACGAA GACCATTGGATCCCCGGCATTGGTGATTGACTCGCCGAAGCTGTCCATGG TGTTGGAAAGGTCTGAGCCTACTGCCTTAGCTGGTAAAGCTGTAACAGCT CGCGGGGGATCCTTCAACATCCCTGCAGCCATCTCAGCTAAACTGGGCGA GGGTTCTGGTCCGGTTGACATGAAAGTTATGTCTTTGCCGACCAATCCAT TTATATGGGACGAAAGTGCCAGTTCCATAAACAGTCCCGTCGTGTCACTG GCGTTCCAAGGCTCTGATGGCAATGAACTTGCCATGGATGATATGGAGGA ACCATTCGAGATTAGGATCAACAACAGTCCAGAAAAGGTTCCCATTCCTC GAAGATTTGACCCACCAAGTCCGCCGGATGAGTCGGAAGAGGAAAACTTT TACTACGATTACGAACCAGCAGCTGACATGGACTACGCCTTTCACGTGAT AGACGTACCAAGAAGTGACAACGCTGTAACTGCGCTATACCAGACCGCAG GTTCCGTCACCAGTGTGGAAGCTGTGCAGCAGTCGTGCATCACCATGAAA GCTATCACAGAAAAATCCTCTGAAGTATCTCCTGATACCCAGGTCACAGC AGCCTCGGCTGTGGAGAATATGGCAGAGAAATTAAAGTCGGTTGACGTGT CTGAGGAACTCTCTGAGAATATCGAGAATACAGCAACAGAACTTGTGTCA AGTCTTAGCAACATCTTGGTTGCCACGGATGCGACAGTACAAGAGAAGAT CAAAACTGGAACAGAAGAAGCTGTGGACGTGATGTCGTTAAGCCCAGAAG AAGCTGAACAAAGAGAACGCGATTTACAAGCATCTCAAGAAACACAGCAA GAGGACGAAACGATGGCAAAAGATACAGCTAGACAGGTCTCAACGAAGAC ATTCAAAGCTGCAACAGCAATATCAGGCTTAGTTATGAAGACGAAGACCA TTGGATCCCCGGCATTGGTGATTGACTCGCCGAAGCTGTCCATGGTGTTG GAAAGGTCTGAGCCTACTGCCTTAGCTGGTAAAGCTGTAACAGCTCGCGG GGGATCCTTCAACATCCCTGCAGCCATCTCAGCTAAACTGGGCGAGGGTT CTGGTCCGGTTGACATGAAAGTTATGTCTTTGCCGACCAATCCATTTATA TGGGACGAAAGTGCCAGTTCCATAAACAGTCCCGTCGTGTCACTGGCGTT CCAAGGCTCTGATGGCAATGAACTTGCCATGGATGATATGGAGGAACCAT TCGAGATTAGGATCAACAACAGTCCAGAAAAGGTTCCCATTCCTCGAAGA TTTGACCCACCAAGTCCGCCGGATGAGTCGGAAGAGGAAAACTTTTACTA CGATTACGAACCAGCAGCTGACATGGACTACGCCTTTCACGTGATAGACG TACCAAGAAGTGACAACGCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000036 | genome | Sc0000036:1817321..1822182 + |
Properties
Property Name | Value |
Transcript id | BL96281_cuf1 |
Biotype | protein_coding |
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