transcript:BL97115_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97115_cuf1
Unique Nametranscript:BL97115_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97115_cuf1

>transcript:BL97115_cuf1-protein ID=transcript:BL97115_cuf1-protein|Name=transcript:BL97115_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=134bp
TTEQTSGMTTVLSTRQATPTVQLSGDETKLTSSRPPVGNRATPDQNADVS
GDAAVLGQPTSAAEEKAQMCRKAIKTLVSETGLAQTPQRVQKLAELSSLV
IKSCPGIPQEDKDMAMSVLKSVTSKLDQLDMSDP
Run BLAST on NCBI

mRNA from alignment at Sc0000052:49447..52245+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97115_cuf1 ID=transcript:BL97115_cuf1|Name=transcript:BL97115_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2799bp|location=Sequence derived from alignment at Sc0000052:49447..52245+ (Branchiostoma lanceolatum)
CTACAACTGAGCAGACGAGTGGGATGACCACAGTCCTGTCCACCAGACAA
GCAACTCCAACTGTACAACTCAGTGGCGATGGTAGGTCTCATCTGTTTAC
CATACCGATACTGGAACCATCAGTGAGCAACTTGAACACTTTTTACAAGG
TTATAAAATTATCATATATGAGGCATTGATACTGTTGTTCAACCAAATGA
ATGTACAATTTTTCTAAGTGTACCAAATGCATAAAACAGTGTTAAATAAT
TGATCTCTAAAAAGAACATCATTCAATTTGTGGGACTATGTACATAATTA
TATACAACAGTGAGAAAAACATTACGGTAAATGTTATTCTCACTGTTGTA
TATAATTATGTACATAGTCCCACAAATTGAATGACGTTCTTTTCAGATAT
GAAAGATTTGATGAGGCATTGAAACTTATAATGTTTTACCATTGACGGTA
AAATCTGCTCTTCGATTGCAAACCCCCATTTCTTTCAATGCTATTAAGAA
AAAGATGCCCAATGGGCATTCTTCAATGGCATCTGCAAAATTGTTTGAAA
TGTTCTTCTCTTTCTTCTGTGCAGAAACCAAGTTGACCAGCAGCAGGCCG
CCGGTGGGTAACAGGGCGACACCTGACCAGGTATGTGGTTCTACAGCGGA
GGGGAGTTTGGGGGTGAATCATTTGGTTAAAGGCCCCCTAGCCAATGGTT
GGAGACCAACCAAAATTGGATTTGTGTAATGGCATGGCCTTATGAGCTCA
GTGGAAAGGGGTTATAAAGGACAACCTATCCACCCTGAATGTAAGTGTAT
ATGGGAGAAAGAGAGGGTATAAAAACTGAGAAGTACTGTAAAAAATTTGC
AAGTACAGTACAGTATATGTCAGTCACTTCTTGCTGATTAACACACATTA
AATATTTTTAACAGACACAATAAATGTTACAGTAACTGTTATTGTTTCTG
TTAAAAACATTTAATGTGTGTTAAGCAGCAAGAGGTGACTGTATATTATA
TAATATTATGTACTGTACTTTCCGGAGGAACATGAACACAGGATATGTTA
GAATGCCTGAGTGTACTGCCCTTAAATTCCTGTGAAAAATTAAGGCATAT
GTTATCTAATAATCTGACTGTACTGCCCTTTGTTCCTGTTCAATAGGCTC
TTGGTAACAGTCTGGACAGCATCTATGCAGAATCCGTCTCCCCAAACCCA
CAGGATGTGCTCCAGATACTGGCTCAGGTAAGTCACACCCAGTACTACCT
TCTATCAGAATGATTGTTTTTCTCTCAACAATTATGGCACGGACCTCCAC
AGAAGTTTAGAGCATGAAGGGACAAAACCACTTTAGTCCAGAAGGGGGTG
GAACCTCTTGCTTTTTGGCTTACCATACAAATATTGATGACTAATATCGG
CAATTTCTTGGGAGTTAAGCTTTGGATCTTACTTAAACTATGCGAAATTA
AATGCATTTACAGTAAATGTTGTTGTGTCAACATTTCATTTGCAATTATG
CACTTTGATGTTTTTTTTTTCCAGTAAGACTTCTACTAACTTTAAAGTTA
TAGTAAATGCAATTATTGTATCTAATTCTAGATTCCTATCAAACTCATTC
AATTTGTCATCTTTTTGGTGTGTGTGAAAGATTACTGTAGGATGAAGAAG
ACAAGCAAATTAACCTTCTCCCTGCTGCCTCACTCTGTGACCAATAGAGA
ATGGGGTGCCAAACGGCTACTTCAGTGTGCTAAAAGTTAACTGGACTTGT
GCATTTAGTATGTTAAGAACACACATGTTTTTACTAATTCTTTGTCCTTA
ATACAACTTTGTTGTAAAAAAAACAACTTTATTCTGAGAAATTTGTCTTT
CATAAATGAGAAGAATGCGGATGTCTCTGGAGATGCTGCTGTGCTGGGGC
AGCCAACATCAGCTGCTGAGGAAAAGGCACAGGTAAGCAATGTTTGGTAG
TCTGTAACATTTTAAAGCGTTGGGAAACATTTGAGAAATCTGTTTCATCT
CTCTCTTGGAAACATGGGGACATTTTATGGAGTTTGGACCAGGATAAGGA
ACAAAGGTGTTCAATCTTGTTATCCGTTGTTGTAGATGTGCAGGAAGGCA
ATTAAAACATTGGTGTCTGAAACGGGTCTGGCCCAGACGCCGCAACGTGT
GCAAAAGCTCGCTGAGTTATCATCGCTTGTCATTAAGTCCTGTCCTGGCA
TTCCACAGGAGGATAAGGTAAAAGTCGCTGATGGGATTTTTACAAACTGA
ACGGTTTGACTCCTTACCTACAACTATGACATGACTACTCATGTCAGGCT
TGCAACTCTGCAGAAAACAGTTATCTATTTGTGCCTATCTTTTTATGTAT
GGCATGATGCTTTGACTTTATTGTCCTTCATAGATTGTATTTAGGTCGTC
CTTTTTCAATTTTAACATTATGCAGCATAGATTTTGCACATCACGCAATT
AGCTGATAATATTAATCATTTTGTTATTCTTGAATGAAATGAACAAATTG
AACATTTCACTTTGCACTTGTCCAAGTCTTTTGTCACAAAAGGCTTCTCA
TCAATTCATTTTTTTACCTAAGATGCATGTAAGTCGCTCTGTTTTTGATA
GTGGAAATCTGCCCAAGATGTCTGCACATTCTGGTTGAGCAAGTCATAAG
TATCGAATCTTTCTAGATAAGTCTAATATAAAGCAGACCTTTAACACTTA
TCAAAGATTTAATATAGTATTACTTTCCTATAGGACATGGCCATGAGTGT
TCTGAAGTCCGTCACCAGCAAACTGGACCAACTGGACATGTCTGACCCA

Coding sequence (CDS) from alignment at Sc0000052:49447..52245+

>transcript:BL97115_cuf1 ID=transcript:BL97115_cuf1|Name=transcript:BL97115_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2010bp|location=Sequence derived from alignment at Sc0000052:49447..52245+ (Branchiostoma lanceolatum)
ACAACTGAGCAGACGAGTGGGATGACCACAGTCCTGTCCACCAGACAAGC
AACTCCAACTGTACAACTCAGTGGCGATGAAACCAAGTTGACCAGCAGCA
GGCCGCCGGTGGGTAACAGGGCGACACCTGACCAGAATGCGGATGTCTCT
GGAGATGCTGCTGTGCTGGGGCAGCCAACATCAGCTGCTGAGGAAAAGGC
ACAGATGTGCAGGAAGGCAATTAAAACATTGGTGTCTGAAACGGGTCTGG
CCCAGACGCCGCAACGTGTGCAAAAGCTCGCTGAGTTATCATCGCTTGTC
ATTAAGTCCTGTCCTGGCATTCCACAGGAGGATAAGGACATGGCCATGAG
TGTTCTGAAGTCCGTCACCAGCAAACTGGACCAACTGGACATGTCTGACC
CAACAACTGAGCAGACGAGTGGGATGACCACAGTCCTGTCCACCAGACAA
GCAACTCCAACTGTACAACTCAGTGGCGATGAAACCAAGTTGACCAGCAG
CAGGCCGCCGGTGGGTAACAGGGCGACACCTGACCAGAATGCGGATGTCT
CTGGAGATGCTGCTGTGCTGGGGCAGCCAACATCAGCTGCTGAGGAAAAG
GCACAGATGTGCAGGAAGGCAATTAAAACATTGGTGTCTGAAACGGGTCT
GGCCCAGACGCCGCAACGTGTGCAAAAGCTCGCTGAGTTATCATCGCTTG
TCATTAAGTCCTGTCCTGGCATTCCACAGGAGGATAAGGACATGGCCATG
AGTGTTCTGAAGTCCGTCACCAGCAAACTGGACCAACTGGACATGTCTGA
CCCAACAACTGAGCAGACGAGTGGGATGACCACAGTCCTGTCCACCAGAC
AAGCAACTCCAACTGTACAACTCAGTGGCGATGAAACCAAGTTGACCAGC
AGCAGGCCGCCGGTGGGTAACAGGGCGACACCTGACCAGAATGCGGATGT
CTCTGGAGATGCTGCTGTGCTGGGGCAGCCAACATCAGCTGCTGAGGAAA
AGGCACAGATGTGCAGGAAGGCAATTAAAACATTGGTGTCTGAAACGGGT
CTGGCCCAGACGCCGCAACGTGTGCAAAAGCTCGCTGAGTTATCATCGCT
TGTCATTAAGTCCTGTCCTGGCATTCCACAGGAGGATAAGGACATGGCCA
TGAGTGTTCTGAAGTCCGTCACCAGCAAACTGGACCAACTGGACATGTCT
GACCCAACAACTGAGCAGACGAGTGGGATGACCACAGTCCTGTCCACCAG
ACAAGCAACTCCAACTGTACAACTCAGTGGCGATGAAACCAAGTTGACCA
GCAGCAGGCCGCCGGTGGGTAACAGGGCGACACCTGACCAGAATGCGGAT
GTCTCTGGAGATGCTGCTGTGCTGGGGCAGCCAACATCAGCTGCTGAGGA
AAAGGCACAGATGTGCAGGAAGGCAATTAAAACATTGGTGTCTGAAACGG
GTCTGGCCCAGACGCCGCAACGTGTGCAAAAGCTCGCTGAGTTATCATCG
CTTGTCATTAAGTCCTGTCCTGGCATTCCACAGGAGGATAAGGACATGGC
CATGAGTGTTCTGAAGTCCGTCACCAGCAAACTGGACCAACTGGACATGT
CTGACCCAACAACTGAGCAGACGAGTGGGATGACCACAGTCCTGTCCACC
AGACAAGCAACTCCAACTGTACAACTCAGTGGCGATGAAACCAAGTTGAC
CAGCAGCAGGCCGCCGGTGGGTAACAGGGCGACACCTGACCAGAATGCGG
ATGTCTCTGGAGATGCTGCTGTGCTGGGGCAGCCAACATCAGCTGCTGAG
GAAAAGGCACAGATGTGCAGGAAGGCAATTAAAACATTGGTGTCTGAAAC
GGGTCTGGCCCAGACGCCGCAACGTGTGCAAAAGCTCGCTGAGTTATCAT
CGCTTGTCATTAAGTCCTGTCCTGGCATTCCACAGGAGGATAAGGACATG
GCCATGAGTGTTCTGAAGTCCGTCACCAGCAAACTGGACCAACTGGACAT
GTCTGACCCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97115gene:BL97115Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97115_cuf1transcript:BL97115_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97115_cuf1-E1BL97115_cuf1-E1-1564476830-229013Branchiostoma lanceolatumexon
BL97115_cuf1-E2BL97115_cuf1-E2-1564476830-229015Branchiostoma lanceolatumexon
BL97115_cuf1-E3BL97115_cuf1-E3-1564476830-229017Branchiostoma lanceolatumexon
BL97115_cuf1-E4BL97115_cuf1-E4-1564476830-229019Branchiostoma lanceolatumexon
BL97115_cuf1-E5BL97115_cuf1-E5-1564476830-229021Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000052genomeSc0000052:49447..52245 +
Properties
Property NameValue
Transcript idBL97115_cuf1
Biotypeprotein_coding