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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97341_cuf2 >transcript:BL97341_cuf2-protein ID=transcript:BL97341_cuf2-protein|Name=transcript:BL97341_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=143bp
RLYGDVPVRPPCARPQPAGLDVTGGPYTHGAVAADALECSAIGRDILKKG
GSAVDSAIATLACVELIHGHSAGLGGGLIMTVYNKETGTALVINARETAP
SRASTDMFGTNNSTAQFGGLAVAVPGQVRGLWEAHQRFGKLPW Run BLAST on NCBI mRNA from alignment at Sc0000015:1195610..1199307- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97341_cuf2 ID=transcript:BL97341_cuf2|Name=transcript:BL97341_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3698bp|location=Sequence derived from alignment at Sc0000015:1195610..1199307- (Branchiostoma lanceolatum)
CGGTTGTACGGGGATGTCCCCGTGAGACCACCGTGCGCGCGTCCCCAGCC
GGCCGGGCTGGACGTCACCGGCGGCCCGTACACACACGGGGCGGTCGCCG
CCGACGCTCTGGAATGTTCTGCGATCGGCAGGTACGTGACTTGAACCTCT
ATCGACAGTGGTTATAACGCCAGTGCTGAAGTCGTAAAGAACGATTGAAA
CTCTACTGCAACACAATTTTATGAACAGCGAGGTTTCATAATTATGACTC
TTGAAAAGTTCGTTTGTACGACGTGTGAAAAGCCCCTTAACTTAGCCGAC
CATAGCCTCTCAACCAGTTCTCCTAATAAAGTCAGTCGTGAGCAATGTCA
TCTGTGGGTAGCAGTTGGTCTACGAGGTTGAGAAAGGGTCCGATAGCAAT
CGGGACACGGTTGGGAGTAAGTCTTGAGGTTAACAATATGCTGTCATGTT
CTGTTTGTGACATGGTTGTGGCACAGTCGTCGCGACAGATAGGCTTGGCC
TAAAAATGGTCCGACTGCTCCCAACCCACCGCAGACTTTGATTAAGAGGT
GGACGGGACGAGGTCACAGGACGGCCCTGAGGGTGACAGGGACTTTACTG
AGTGTATGCTTGGACAAGGGTAGGGGGGAGGGTGGAAGGCCGAACAAATG
TTCGCGGTGTAATAACAGCGAAAACAGACTTGATTATTTATCCCTTTTAT
TTAGTAAAGAAAAGTATAGCATCATTAAATCCGGGATAAACTGAATAGCC
GGAATAGTGGTATGGTGATGGTTTTATCCAATATTTTCGCCAGTAAGAGA
TTATGAAAACTCCTTTGGTGAAAAAAGGGGATAAGACCCCCGCCATCCCC
TCTTTTCGCCAGTATGAGATTTTCACCGTAAGGAGTTTTTATAATCTCTC
ACTGGGGAAAATATGTGATAAACCATCACAATACCACTATTGTGACTATT
TTGTATATCCCGTATTTAATGCTACTATACAATTCAGTACTAAATAATAG
GGATAAATAATCATGTCTGCGAAAACCGCGAATACAAAACCACGGTATTT
ACGGTAAATATGGTAAAGAGGGACCATATCTGGGACTTACAAACGTCTCT
ATAAAAGTAAAACTCACATGGATTAATGTCCTTTAATGTTGCATCGAGTT
CTAAACCTTGTTGCATTATGTTTCATGTCTGATGACTCAAATCTTAGATT
TAAGAAGAAATACCACAGGCCGTATGATTTTTTAAAAAAATACAGAATTT
TAACAAATACAGTTAAACCTTTATAGCTGATATTAATAATCCTGTCTTTA
GCAACCACCTGTCGATATAGACCAGGTTTTATCGGTAGCCTGAGTGGTCT
TCTTGGACAGTTTTGACAGTAGGTTGTTTTTCAGGGACATTTTGAAGAAG
GGCGGTTCGGCTGTGGACAGCGCCATTGCGACTTTAGCATGTGTGGAGCT
GATTCACGGGCACAGCGCCGGGCTCGGTGGGGGTTTGATCATGACAGTAT
ACAACAAAGAGACAGGTACGGCCCTGGTCATCAACGCCCGGGAAACAGCC
CCTTCCAGAGCCTCCACTGACATGTTTGGGACGAACAACTCCACGGCACA
GTTCGGTAAGTCAGGGCAATGAGCCGCCGGTCGAATAGCTAGTAGTCGAG
CTGCCGGTCAGATTAGTCGAATCAGTGATCTAGGTCTTATGGCCTTCTGC
ATCCCATTTTCTGCGACACCAATTCTTGAAAAACTAGTTTTTTTCTACCT
GAGGTTACTCTCAGACTGGTCTTCATACTAGACTAACTACGCTTGCTAAA
GGGAGAACCATGTCCCAGTAGAGTTTGGCCACCACAGGGTTTCTTTTTCC
TCACCACGGGCTGTCTTACCTTTGCGTTTATCACCTCCATGACAATGGAC
GTTGTTTTTGGGCTGTCTGTGTGTCTGACTGTCTGTGTGTCTGTCTGGTT
GTATTTCCAGATGTTTGTGGTCAGTATAACTTAAGAACCTCTGCGTGGCC
ATGGATTATGATAATATTTTGTATGTAGGTAGGTGTTGGGAAGATGGTCA
GGGTCGCCCCCCCCTTGTAAACTGAAATCTTTATTGACACGACAAAAGTA
CAGCGACTTTCGTAAGGTCTTCTACAACTATAACGTTGGGTAACCTAAAT
TCGGGATTTTTCCGATAATGGTTGACTGAAATCAATCTAGCAGAACAATA
AACCATCTTTTTTTCTATTATTCTGTCAGTATCATGTACTATCTTTGCAC
TAATCATATATATGGTAGATTTTGTCTCTAGTCGCGCTGACACCATAATA
TTTCAACTTCAAACTACCGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTT
AGCTGGATGCCGTAGCAATGGTAATACTACTATGTCCATGTGTTCCTTGT
TGTGTTAGGAGCAAACTTTGAGGAAAATATCTTCCTCAGTCCACTATCAC
ACGCAGCATTTAGACAAAAAAGTGTTCCTCACAAACCTTTGTCGTCTGCT
TGACAACAGGATTCTGGTTAACAATATGGCGGCGGGAAAATACACGTGCC
GTAGGTTGTAGCAACAGAGAGGAGTTTTGATGATTGATCACACTAAGAAT
CCAGTTGCAGGTTAGCAAAAGAGATTGTAATAAGTTGTCTTATAAATAAT
TGTGTTTAGCAGGCAGGAGATGTGACATTTGTCTTATAAACCAGCGAACA
ACCGTGCTGGGTAATTCTCCCACGAAGCCCCCAGACTCTGTCAATAAGGG
ACGGAGAGTTGTTGACGTCGCCAACTTCTAATGCATGGTTATCGAAGCTT
TTCAGCCAGTGTTCTGAATACGTTAGTCTATCTGCTTTGCATTGCTGGCG
TTATAACTGATTTTGCATCTAGCACATATCCCTAAATACCCCGTTTTCGA
AAAATCCCGACTTTAAGTACCCCACGAATTTAGGTTACCCAACGTTACAT
GCAAACAACAAACAATGGGATACAAAATGATTAACCTAAGTACAAGTATA
TGAATACTTCACAACATGTCGAGTTTAACGTATCACTTACACTACTAGTT
GTAAGATCTAAACATTCTTTTATATATTTATGTGACCTTGGTACTGTTGT
TTTTTAATTTTCATTTTGTCCCGGACATGTTATGTTGCTGATGAATTTTG
TGGCAGATAGCTTTGATGTAAGTCTGAAGTCGTTTAGGTTTGCCCCCCCT
AACAGCTTGTTCATCCTATTTTTGCCGAATTCTACTGTCCATAACACCTT
AGGAATGACTAGTGGCTTAGTCGAATCAGTGACTTAGTTATGACCTTTAG
AATCTTATTGCCTGCGGCACCAATTCTTGAAGAACTAGCTTTGTTTCTGC
CTGAGGTTAGTCTGGTCTTCATACCACATGCACACACAGAAACAAAATAA
AACTAACTACCAACCCTCCTGTGGAACACAATTATTTGTCTGTGTGCATC
GTTATATTTATCTCCATATAAATAAAATATTTGTGTTTTCCGTGTGTCAG
TCTGTGTGTTTGCTTGTTCTTCCATATTAAAGAATATTCTATATAAAAAA
AGAGATGTTTGTGTTCCACAGGAGGGTTGGCTGTGGCCGTGCCGGGCCAG
GTCCGCGGGTTGTGGGAGGCCCACCAGAGGTTCGGGAAGCTGCCGTGG Coding sequence (CDS) from alignment at Sc0000015:1195610..1199307- >transcript:BL97341_cuf2 ID=transcript:BL97341_cuf2|Name=transcript:BL97341_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1287bp|location=Sequence derived from alignment at Sc0000015:1195610..1199307- (Branchiostoma lanceolatum)
CGGTTGTACGGGGATGTCCCCGTGAGACCACCGTGCGCGCGTCCCCAGCC
GGCCGGGCTGGACGTCACCGGCGGCCCGTACACACACGGGGCGGTCGCCG
CCGACGCTCTGGAATGTTCTGCGATCGGCAGGGACATTTTGAAGAAGGGC
GGTTCGGCTGTGGACAGCGCCATTGCGACTTTAGCATGTGTGGAGCTGAT
TCACGGGCACAGCGCCGGGCTCGGTGGGGGTTTGATCATGACAGTATACA
ACAAAGAGACAGGTACGGCCCTGGTCATCAACGCCCGGGAAACAGCCCCT
TCCAGAGCCTCCACTGACATGTTTGGGACGAACAACTCCACGGCACAGTT
CGGAGGGTTGGCTGTGGCCGTGCCGGGCCAGGTCCGCGGGTTGTGGGAGG
CCCACCAGAGGTTCGGGAAGCTGCCGTGGCGGTTGTACGGGGATGTCCCC
GTGAGACCACCGTGCGCGCGTCCCCAGCCGGCCGGGCTGGACGTCACCGG
CGGCCCGTACACACACGGGGCGGTCGCCGCCGACGCTCTGGAATGTTCTG
CGATCGGCAGGGACATTTTGAAGAAGGGCGGTTCGGCTGTGGACAGCGCC
ATTGCGACTTTAGCATGTGTGGAGCTGATTCACGGGCACAGCGCCGGGCT
CGGTGGGGGTTTGATCATGACAGTATACAACAAAGAGACAGGTACGGCCC
TGGTCATCAACGCCCGGGAAACAGCCCCTTCCAGAGCCTCCACTGACATG
TTTGGGACGAACAACTCCACGGCACAGTTCGGAGGGTTGGCTGTGGCCGT
GCCGGGCCAGGTCCGCGGGTTGTGGGAGGCCCACCAGAGGTTCGGGAAGC
TGCCGTGGCGGTTGTACGGGGATGTCCCCGTGAGACCACCGTGCGCGCGT
CCCCAGCCGGCCGGGCTGGACGTCACCGGCGGCCCGTACACACACGGGGC
GGTCGCCGCCGACGCTCTGGAATGTTCTGCGATCGGCAGGGACATTTTGA
AGAAGGGCGGTTCGGCTGTGGACAGCGCCATTGCGACTTTAGCATGTGTG
GAGCTGATTCACGGGCACAGCGCCGGGCTCGGTGGGGGTTTGATCATGAC
AGTATACAACAAAGAGACAGGTACGGCCCTGGTCATCAACGCCCGGGAAA
CAGCCCCTTCCAGAGCCTCCACTGACATGTTTGGGACGAACAACTCCACG
GCACAGTTCGGAGGGTTGGCTGTGGCCGTGCCGGGCCAGGTCCGCGGGTT
GTGGGAGGCCCACCAGAGGTTCGGGAAGCTGCCGTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000015 | genome | Sc0000015:1195610..1199307 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97341_cuf2 |
| Biotype | protein_coding |
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