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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96541_cuf2 >transcript:BL96541_cuf2-protein ID=transcript:BL96541_cuf2-protein|Name=transcript:BL96541_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=214bp
RGQRGLCENMEAYESACRAAGLSPLVWRTADRCPMTCPPHSTYSPCISAC
PATCSNPRAPDLCVRFCVEGCACLPGYIRSGEACVSADRCGCFQNGRYFE
IGETWGDGCNRVCTCVSTNLIECRNVECDVNAWCGVKDGREGCHCNPGYN
GDGTSCEPDVAVCSASGDPHYYLFDGGAHHFQGPCRYTLAKDCGSSDFNV
AAQNVPIPTYPSVS Run BLAST on NCBI mRNA from alignment at Sc0000009:1386870..1389979- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96541_cuf2 ID=transcript:BL96541_cuf2|Name=transcript:BL96541_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3110bp|location=Sequence derived from alignment at Sc0000009:1386870..1389979- (Branchiostoma lanceolatum)
GGCGTGGCCAGAGAGGACTTTGTGAGAACATGGAGGCGTACGAGTCGGCC
TGCCGGGCAGCAGGTCTCTCACCTCTGGTCTGGAGAACTGCAGACCGCTG
CCGTAAGCAGGCTAAAACTCATCGTTTGTTAATTTCATTGAATGATGCAT
CTGATTTATATTGATTTGGGAGGGGGGGTGCGTGGACCTATTGGTCGTGG
TCCACCGTCAATTGTATGTGTCGAAAGAGCTAGCTAGGGAAGCGTCTGTA
AATACTTTACATAGCATATAGGAGATTCTTTTTCGAAAACCAGGTATTTT
CACCTGCTGACGTTTCAGTGTCTGTAAGAGAGCTTCTGATTGGAGTACTT
CTTCTCACCGCTATAAGTAGCCTATGTAGGCGGCGATTTTGCGGCGAGAA
CGTAATCCCAAACGTGGCTAAGCTTGTACCCCCCCCCCTCGTCTCGCCAC
CTACATCGGTTACTTATAGAGGTGAGAAGCAGTACTCCTGTCAGAAGCTC
TGAAGAAGGTGTCTGACAGACACCGAAACGTTACAAGATGAGATTACCTG
GTTGTGTAACAAAGAATTCTCCAATATCCTATGTTCAACCTGATGAAATT
ATTTTCGGGACTGTACATAGCGTTTGCCTTCCCTGTCACAACCAGTTGAA
TATCAGTTCTTCAATTAGCTAAACTGGTTCGAGATCACTTTCACCTACTA
ATGTTGACCGTATGTTCTGTCGTGAAGTTGCATTTTGTCGTGCATTCAGC
TGATCCAATCACTCTCTATTCTCCTACAGCTATGACCTGCCCGCCGCACA
GTACGTATTCTCCGTGCATCAGCGCCTGTCCGGCCACCTGCTCCAACCCC
CGGGCTCCCGACTTGTGTGTCCGGTTCTGTGTGGAAGGGTGCGCGTGCCT
ACCGGGATACATCAGGAGCGGAGAGGCATGCGTATCGGCCGATCGGTGCG
GGTGTTTCCAAAATGGAAGATACTTTGAGGTGACGGAATTTCCTCTTCAC
CAAACAGGAAATTGGTAAATTTTGTAGATAAACAGTTACTGTTCTTCAAC
TCAAAGTATTGACTCACGCGAATTTTCGCCCGAAATACTCGGTCTTCATC
AGCCATCTGAACGTAAGGCTGTGGTTGCACTTACTTAACGTACTTGACTT
ATGTCAGGTGCAATTCTCCATCTACATGCATGTCTCCTGAGCCACCATGG
CTGCCCAGAAGTCCCTGTCCTGCATAGCCTTCCCCTGCCGTCAGCTGTAT
GCCGGTGTCTCTTTCCAGCACATCTAAGTATGTAAGTGGCTGTCTTCCAT
GCCTTCTTCTCCCATGTGTTGGGGACAATGGCACTAAGTCGGAGACTATT
TCCTTCCTGTTTCTAAGGCAGTGTCGGGCACGCTTTTAAGATAAGTGTGA
CGTCAGCACTGGGTCAAAGTTTTCAGATAAGTGTGACGTCAGCACTGGGT
CAAAGTTCGTCGGAAGCCGGTATCACCCCCCGTCCCGGTTGAGAGAACGT
CAGTGTGCCCTGATGTAGATGGCCTCCTTTACTCCTCTCGCAAACTAGCA
AAATCACCTTTAATTCTATTATTCCTCTCATTGCCGGTGTTGAGGTCGAC
ACTACTAATTTATTCGTGAGTGTATGAAACTTAAATGACTTCAATGTCTC
CTAGATTGGAGAAACCTGGGGAGATGGCTGCAACCGTGTCTGCACATGCG
TCAGCACCAACCTCATAGAATGCAGGAACGTCGAGTGCGACGTCAACGCC
TGGTGTGGGGTTAAGGACGGAAGGGAGGGATGTCACTGCAACCCTGGATA
CAACGGCGACGGAACAAGCTGTGAACCCGGTAAGACCATATCAAAAATAT
CTCTTGCCTAGTTTGTCCACCTTCCTTTATCAGCGCTGAAACCCACTCAG
AAAATGTTCGGCAAACCCTCCCGGTCCCAGCACCGATCTTTTGAACGGAG
ATTTTGGCTTCTGGGGGCGTCACTGACAGTTGCTCATGAATAATCAATGA
GCTAGCCTTATTTGGCATAAACAGTCGTGAGTTGCTCATGAATAATTGAT
TAGCGATGCAAGACGTAAGCTAAATAGCTGATAGCTTCCCAGCGTCCTTT
GCGGCTTTGCTCGAGATGAGCTTTTAGCAAACCCTCTGATTGGCTGAAAG
CTGTTTGGTGGTGACGTCGCCAGAACCGTGTTCAGGGGCTCGGAAGGGCA
GGGCCGCTATAGAAGGTAACGAACATATCGGGTCTGTTGGGAGGATGAGT
TTGTCATATTTTGCAAGAAAGACTAGTGAATTTATCACTTGGATACCACC
GAAATTTCCTCATAGTCTTCGCCCATGATTTTGCAAATTAAAGAACTTTT
CCAGATAAAACGAAAGTGAGTGGCCGCTATATGACTTGTGCTTTCGTATC
CTTTCAAAAATCGAAGTTAAAAACCTGTTTATCTATTTCTGTTTTCTTTA
TACAGGGTATGATGCTCTCAGTGCTAACCACACTGCTTTGCAAGCGTGCC
CTGTACAGAACAACATAAACGGACTCAACAACATAAACAAGGAAATAACA
TAAGCTAATGAACAAAAAGTAACCAAAATAACAATAGATATACAACCAAG
CGTGAGATCAAAATCATATACCGTAAATCAAGTCAATATGGCAGGCTGGG
TTTGGAGGTCAGAGGTCAGCAGTGATACTTTAGTAGCTTTTTGAAAGTTA
GGCCCGACGTGGACACTAGTCGGCAAATCATTCCAGTCAAATGCACCCCT
GTACGCAAATTTTCCTCGGCCGGAGTTTAGTTTGACTCACTTCGGTTCTC
CCACAAATATTCTAGCAATCAATATCATCCTAAACTTGGCTAACAGTACT
AGTGTTTCCTTCTGAGTCTTTCAGTTACCAAATTAACGCTTGAAATGTGA
CTATTACCTTATGGATCTTAAAACACGTCGTTGCTTTGACAGACGTGGCG
GTCTGCAGTGCATCAGGTGACCCTCACTACTACCTGTTCGACGGAGGCGC
TCACCACTTTCAAGGACCGTGCAGGTACACCTTAGCCAAGGACTGCGGCA
GCAGCGACTTTAACGTGGCCGCACAGAACGTACCGATCCCGACATACCCG
AGCGTTTCCG Coding sequence (CDS) from alignment at Sc0000009:1386870..1389979- >transcript:BL96541_cuf2 ID=transcript:BL96541_cuf2|Name=transcript:BL96541_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2568bp|location=Sequence derived from alignment at Sc0000009:1386870..1389979- (Branchiostoma lanceolatum)
CGTGGCCAGAGAGGACTTTGTGAGAACATGGAGGCGTACGAGTCGGCCTG
CCGGGCAGCAGGTCTCTCACCTCTGGTCTGGAGAACTGCAGACCGCTGCC
CTATGACCTGCCCGCCGCACAGTACGTATTCTCCGTGCATCAGCGCCTGT
CCGGCCACCTGCTCCAACCCCCGGGCTCCCGACTTGTGTGTCCGGTTCTG
TGTGGAAGGGTGCGCGTGCCTACCGGGATACATCAGGAGCGGAGAGGCAT
GCGTATCGGCCGATCGGTGCGGGTGTTTCCAAAATGGAAGATACTTTGAG
ATTGGAGAAACCTGGGGAGATGGCTGCAACCGTGTCTGCACATGCGTCAG
CACCAACCTCATAGAATGCAGGAACGTCGAGTGCGACGTCAACGCCTGGT
GTGGGGTTAAGGACGGAAGGGAGGGATGTCACTGCAACCCTGGATACAAC
GGCGACGGAACAAGCTGTGAACCCGACGTGGCGGTCTGCAGTGCATCAGG
TGACCCTCACTACTACCTGTTCGACGGAGGCGCTCACCACTTTCAAGGAC
CGTGCAGGTACACCTTAGCCAAGGACTGCGGCAGCAGCGACTTTAACGTG
GCCGCACAGAACGTACCGATCCCGACATACCCGAGCGTTTCCCGTGGCCA
GAGAGGACTTTGTGAGAACATGGAGGCGTACGAGTCGGCCTGCCGGGCAG
CAGGTCTCTCACCTCTGGTCTGGAGAACTGCAGACCGCTGCCCTATGACC
TGCCCGCCGCACAGTACGTATTCTCCGTGCATCAGCGCCTGTCCGGCCAC
CTGCTCCAACCCCCGGGCTCCCGACTTGTGTGTCCGGTTCTGTGTGGAAG
GGTGCGCGTGCCTACCGGGATACATCAGGAGCGGAGAGGCATGCGTATCG
GCCGATCGGTGCGGGTGTTTCCAAAATGGAAGATACTTTGAGATTGGAGA
AACCTGGGGAGATGGCTGCAACCGTGTCTGCACATGCGTCAGCACCAACC
TCATAGAATGCAGGAACGTCGAGTGCGACGTCAACGCCTGGTGTGGGGTT
AAGGACGGAAGGGAGGGATGTCACTGCAACCCTGGATACAACGGCGACGG
AACAAGCTGTGAACCCGACGTGGCGGTCTGCAGTGCATCAGGTGACCCTC
ACTACTACCTGTTCGACGGAGGCGCTCACCACTTTCAAGGACCGTGCAGG
TACACCTTAGCCAAGGACTGCGGCAGCAGCGACTTTAACGTGGCCGCACA
GAACGTACCGATCCCGACATACCCGAGCGTTTCCCGTGGCCAGAGAGGAC
TTTGTGAGAACATGGAGGCGTACGAGTCGGCCTGCCGGGCAGCAGGTCTC
TCACCTCTGGTCTGGAGAACTGCAGACCGCTGCCCTATGACCTGCCCGCC
GCACAGTACGTATTCTCCGTGCATCAGCGCCTGTCCGGCCACCTGCTCCA
ACCCCCGGGCTCCCGACTTGTGTGTCCGGTTCTGTGTGGAAGGGTGCGCG
TGCCTACCGGGATACATCAGGAGCGGAGAGGCATGCGTATCGGCCGATCG
GTGCGGGTGTTTCCAAAATGGAAGATACTTTGAGATTGGAGAAACCTGGG
GAGATGGCTGCAACCGTGTCTGCACATGCGTCAGCACCAACCTCATAGAA
TGCAGGAACGTCGAGTGCGACGTCAACGCCTGGTGTGGGGTTAAGGACGG
AAGGGAGGGATGTCACTGCAACCCTGGATACAACGGCGACGGAACAAGCT
GTGAACCCGACGTGGCGGTCTGCAGTGCATCAGGTGACCCTCACTACTAC
CTGTTCGACGGAGGCGCTCACCACTTTCAAGGACCGTGCAGGTACACCTT
AGCCAAGGACTGCGGCAGCAGCGACTTTAACGTGGCCGCACAGAACGTAC
CGATCCCGACATACCCGAGCGTTTCCCGTGGCCAGAGAGGACTTTGTGAG
AACATGGAGGCGTACGAGTCGGCCTGCCGGGCAGCAGGTCTCTCACCTCT
GGTCTGGAGAACTGCAGACCGCTGCCCTATGACCTGCCCGCCGCACAGTA
CGTATTCTCCGTGCATCAGCGCCTGTCCGGCCACCTGCTCCAACCCCCGG
GCTCCCGACTTGTGTGTCCGGTTCTGTGTGGAAGGGTGCGCGTGCCTACC
GGGATACATCAGGAGCGGAGAGGCATGCGTATCGGCCGATCGGTGCGGGT
GTTTCCAAAATGGAAGATACTTTGAGATTGGAGAAACCTGGGGAGATGGC
TGCAACCGTGTCTGCACATGCGTCAGCACCAACCTCATAGAATGCAGGAA
CGTCGAGTGCGACGTCAACGCCTGGTGTGGGGTTAAGGACGGAAGGGAGG
GATGTCACTGCAACCCTGGATACAACGGCGACGGAACAAGCTGTGAACCC
GACGTGGCGGTCTGCAGTGCATCAGGTGACCCTCACTACTACCTGTTCGA
CGGAGGCGCTCACCACTTTCAAGGACCGTGCAGGTACACCTTAGCCAAGG
ACTGCGGCAGCAGCGACTTTAACGTGGCCGCACAGAACGTACCGATCCCG
ACATACCCGAGCGTTTCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000009 | genome | Sc0000009:1386870..1389979 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96541_cuf2 |
| Biotype | protein_coding |
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