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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000388 ID=TCONS_00000388|Name=TCONS_00000388|organism=Clytia hemisphaerica|type=transcript|length=998bp
TGAAAAGGAGAGCAAACTCTATCAATTCAAACCATTCCTGGACAAAAATG
GCATCTTGAGAATCGGCGGTAGACTTAAGAATGCCCATGTCTCATTTGAA
GCAAAACATCAAATTGTTATCCCCAAAGGATATGTTGCATCACTTATTGC
TGAGAAATATCACAAAGAGAATGGTCACAGTGGTGTAAATCAAACCTTAT
CCGAAGTTAGACAGAAATATTGGATATTATGTGGAAGGCAAGTAATCAAA
ACAGTCATCAAAGCGTGCGTGGAATgtcaaagatttaaaaacaaacctGA
GATTCCAATGATGGCTGACTTACCTGACAGTAGAATGCAACTCAACCAAC
CACCATTCACCAACACTGGTGTGGATTTCTTTGGACCAATCCTCGTTAAA
CAAGGTCGCAAACGTCTGAAGCGCTGGGTTTCACTATTTAAATGCATGAC
GGTCCGATGCGTCCATCTTGAAGTTGTAGAAAGTATGGAAACTGACAATT
TTTTAAACGCACTCCAACGCTTCATCAGCCGCAGACAGAAACCAAGGAAG
CTGCTCTCGGATTGTGGCTCAAACTTTAAAGGTGCGGTAAACGAGCTCAA
AGAAGAACTAAGAAAATTGAACCAGCACAAGATTGGGGAATTTTGTTCAC
CCAGGGAGATTGAATGGCAATTCAACCCTCCATCGGCGCCACACATGGGT
GGAGCCTGGGAACGACTAGTTCGAACTGTCAAAACAAGCATGAAATTCAC
CTTGAAGAATCTCATATTAACCGAATTTCAACTTATGACATTCATAACTG
AAGTGGAAAATATCTTGAACAGTCGTCCACTAATTCCAATCAGTGAAGAT
CCTAAAGACTTAGAGGCACTAACACCGAACCACCTGCTAAAAGGATTCAA
CAACGCAGAAGTTCTACTCAATACAGACAAAGATTTGGACATCACAAAAT
GCTATCGCAAACGATGGAAGCACATTCAGATGTGCTTAGAACACTTCT Run BLAST on NCBI protein sequence of TCONS_00000388-protein >TCONS_00000388-protein ID=TCONS_00000388-protein|Name=TCONS_00000388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
EKESKLYQFKPFLDKNGILRIGGRLKNAHVSFEAKHQIVIPKGYVASLIA
EKYHKENGHSGVNQTLSEVRQKYWILCGRQVIKTVIKACVECQRFKNKPE
IPMMADLPDSRMQLNQPPFTNTGVDFFGPILVKQGRKRLKRWVSLFKCMT
VRCVHLEVVESMETDNFLNALQRFISRRQKPRKLLSDCGSNFKGAVNELK
EELRKLNQHKIGEFCSPREIEWQFNPPSAPHMGGAWERLVRTVKTSMKFT
LKNLILTEFQLMTFITEVENILNSRPLIPISEDPKDLEALTPNHLLKGFN
NAEVLLNTDKDLDITKCYRKRWKHIQMCLEHF Run BLAST on NCBI transcript from alignment at sc0000001:2852144..2853141 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000388 ID=TCONS_00000388|Name=TCONS_00000388|organism=Clytia hemisphaerica|type=transcript|length=998bp|location=Sequence derived from alignment at sc0000001:2852144..2853141 (Clytia hemisphaerica)
AGAAGTGTTCTAAGCACATCTGAATGTGCTTCCATCGTTTGCGATAGCAT
TTTGTGATGTCCAAATCTTTGTCTGTATTGAGTAGAACTTCTGCGTTGTT
GAATCCTTTTAGCAGGTGGTTCGGTGTTAGTGCCTCTAAGTCTTTAGGAT
CTTCACTGATTGGAATTAGTGGACGACTGTTCAAGATATTTTCCACTTCA
GTTATGAATGTCATAAGTTGAAATTCGGTTAATATGAGATTCTTCAAGGT
GAATTTCATGCTTGTTTTGACAGTTCGAACTAGTCGTTCCCAGGCTCCAC
CCATGTGTGGCGCCGATGGAGGGTTGAATTGCCATTCAATCTCCCTGGGT
GAACAAAATTCCCCAATCTTGTGCTGGTTCAATTTTCTTAGTTCTTCTTT
GAGCTCGTTTACCGCACCTTTAAAGTTTGAGCCACAATCCGAGAGCAGCT
TCCTTGGTTTCTGTCTGCGGCTGATGAAGCGTTGGAGTGCGTTTAAAAAA
TTGTCAGTTTCCATACTTTCTACAACTTCAAGATGGACGCATCGGACCGT
CATGCATTTAAATAGTGAAACCCAGCGCTTCAGACGTTTGCGACCTTGTT
TAACGAGGATTGGTCCAAAGAAATCCACACCAGTGTTGGTGAATGGTGGT
TGGTTGAGTTGCATTCTACTGTCAGGTAAGTCAGCCATCATTGGAATCTC
aggtttgtttttaaatctttgacATTCCACGCACGCTTTGATGACTGTTT
TGATTACTTGCCTTCCACATAATATCCAATATTTCTGTCTAACTTCGGAT
AAGGTTTGATTTACACCACTGTGACCATTCTCTTTGTGATATTTCTCAGC
AATAAGTGATGCAACATATCCTTTGGGGATAACAATTTGATGTTTTGCTT
CAAATGAGACATGGGCATTCTTAAGTCTACCGCCGATTCTCAAGATGCCA
TTTTTGTCCAGGAATGGTTTGAATTGATAGAGTTTGCTCTCCTTTTCA Coding sequence (CDS) from alignment at sc0000001:2852144..2853141 >TCONS_00000388 ID=TCONS_00000388|Name=TCONS_00000388|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000001:2852144..2853141 (Clytia hemisphaerica)
GAAGTGTTCTAAGCACATCTGAATGTGCTTCCATCGTTTGCGATAGCATT
TTGTGATGTCCAAATCTTTGTCTGTATTGAGTAGAACTTCTGCGTTGTTG
AATCCTTTTAGCAGGTGGTTCGGTGTTAGTGCCTCTAAGTCTTTAGGATC
TTCACTGATTGGAATTAGTGGACGACTGTTCAAGATATTTTCCACTTCAG
TTATGAATGTCATAAGTTGAAATTCGGTTAATATGAGATTCTTCAAGGTG
AATTTCATGCTTGTTTTGACAGTTCGAACTAGTCGTTCCCAGGCTCCACC
CATGTGTGGCGCCGATGGAGGGTTGAATTGCCATTCAATCTCCCTGGGTG
AACAAAATTCCCCAATCTTGTGCTGGTTCAATTTTCTTAGTTCTTCTTTG
AGCTCGTTTACCGCACCTTTAAAGTTTGAGCCACAATCCGAGAGCAGCTT
CCTTGGTTTCTGTCTGCGGCTGATGAAGCGTTGGAGTGCGTTTAAAAAAT
TGTCAGTTTCCATACTTTCTACAACTTCAAGATGGACGCATCGGACCGTC
ATGCATTTAAATAGTGAAACCCAGCGCTTCAGACGTTTGCGACCTTGTTT
AACGAGGATTGGTCCAAAGAAATCCACACCAGTGTTGGTGAATGGTGGTT
GGTTGAGTTGCATTCTACTGTCAGGTAAGTCAGCCATCATTGGAATCTCa
ggtttgtttttaaatctttgacATTCCACGCACGCTTTGATGACTGTTTT
GATTACTTGCCTTCCACATAATATCCAATATTTCTGTCTAACTTCGGATA
AGGTTTGATTTACACCACTGTGACCATTCTCTTTGTGATATTTCTCAGCA
ATAAGTGATGCAACATATCCTTTGGGGATAACAATTTGATGTTTTGCTTC
AAATGAGACATGGGCATTCTTAAGTCTACCGCCGATTCTCAAGATGCCAT
TTTTGTCCAGGAATGGTTTGAATTGATAGAGTTTGCTCTCCTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000388-exon-sc0000001-1491911889:2852144..2853141 | TCONS_00000388-exon-sc0000001-1491911889:2852144..2853141 | Clytia hemisphaerica | exon |
| TCONS_00000388-exon-sc0000001-1510915933:2852144..2853141 | TCONS_00000388-exon-sc0000001-1510915933:2852144..2853141 | Clytia hemisphaerica | exon |
| TCONS_00000388-exon-sc0000001-1575043694:2852144..2853141 | TCONS_00000388-exon-sc0000001-1575043694:2852144..2853141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2852144..2853141 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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