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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97471_cuf1 >transcript:BL97471_cuf1-protein ID=transcript:BL97471_cuf1-protein|Name=transcript:BL97471_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=208bp
PYSFRFSPFKSESPEGMDVIETQDLKPIVRRKIQVSAKWRKVDQDICIIH
IFRNGDSLTPPSKLLFKKAWLQNKCTWDVLLEMVQEKVSLDSGAIRKLYR
LDGKPVRDVADIQHDSYYIAVGNEGLKRVEYGQAPKQGFYSSTKRNTELP
PLEFRQKQKKEGYARKNKESPREETHRKQETHRSDGHRTRREEPAARRTI
TYAPAKRK Run BLAST on NCBI mRNA from alignment at Sc0000011:1636410..1641905+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97471_cuf1 ID=transcript:BL97471_cuf1|Name=transcript:BL97471_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5496bp|location=Sequence derived from alignment at Sc0000011:1636410..1641905+ (Branchiostoma lanceolatum)
ACCTTATTCTTTCCGCTTCTCTCCGTTTAAGTCCGAATCTCCTGAAGGGA
TGGATGTAATAGAGGTAAGAGCTGTCGTTTGCTGGGGAACATTATTGGCT
TGACACCACAGTTTTAGAGTCTGGAATAATCTACATGTAGAGGTGTGGTT
TTGTCTCTTTTCTGTACGTCTTTTTCATTGTTTTGTTTGTCGCATTTTTG
CAGTTAATGCCTTGTTTTAAGACTGTAGGCAAACATACCAACGAGGAGTA
TGTCCTTTCAAAATTGATGGTACTCTTATTGGAAGACATTACGATGTCGT
CTCCCCAAGCATTTGCATTAGGAGTAGGTTAGCCTTAGTGAGAAACGAAA
CACAATTATGCAAAATTCCAGTTTAAAGGCGCACAGAACAAGGAACAACG
AAAGACGTACAAAAATGAGACAACCTCCAGTCTGCTGGAAGGTTATTCCA
ACTAAATTGTCACGCTGGTGTGGCATTAATGCTCGATGAAACAGCACAGT
AATAGTGTAATCGTTAAGAACACCATCTCACAAGTTACTCACCAATTAGT
TTACAACGTCTGGTGGTTCGAATTGTTCGATACACGTCGTCGCTCACCAA
TGTGGTTGTAGGCACAATCATCTCACACTCTCTTGAGAATGAATTAGTGC
AAAAACAGGTACACCAACCACCATGATCACGGGAGACTTTGCTAACTTTT
ACACAACTGTTTTCTAATTACCCCCATCATTCTGATGGGTGACGTAGCGG
CGGCAAACGTCTTGTAAACGTGAGCCACACAGACATCGTACCGATAAAAA
ATGTAATCCGCTTAAAGACGAGCAAACACCAATGATAGTATAGTAAAAAT
GATAAGTTGATTAAATGACAGGCTTTTAATTTGGGGCTAATTGAAGGCTA
ATCAAAACCTAATTGCAAGTAACATTCATTTAAAGACAAACCAATGTTGG
CAATAGAACCATGTGGAAACATCGAGCTATTTTAGCTACTTCTGAATCTA
ATACCAGTTGACTAGATCTCGAACTCTTGTATAATGTTATAGATCTAGAT
GACTGATGACTAAGCACGGCGGATATTAGAGCGCCAGCCGTGAAACCTGT
TAACGTCACCGCTGTCATCACGAATCAGGGACTAGAAGCCGCACTAGTTT
AGCCTCCGTTACAGACTCCGCCGAGCCATATATATCATTTCAACCGCGCA
CACATTCCTGATTGGTTTCGTTTTATTAAATCATTCGCACTTTACATCTG
TACAGTCTTGCGGTAAACAGTGGATACCTAGTTGGCTGAATTGCGCTGTT
GACAATACTAAACAATGAATTTTTCGACAATACGAATAGACAAGGCAGGC
ATTTGCTCTTAAAGGATCTGTTGTATCGCCAATGCTAACGTGGTCGAGAA
CAAGAATAGCAGCCCTATTGTAACGAAGGCAAACATTGATCCGCACCCAG
TGTGTACTCCCATAACGTGACATAGTCCTCGCGGACAGTCTGGTTTCCAG
GCTATTGTAACGAAGGCTAACATTTGTCAATACGCACGTCGTGTGCACGC
TCAGAACTAGATGTGTACCCTGGAGACAGTCTGGCTTCCAGGCTATTGTA
ACGAAGGCTAGCATTGGTTAATGCGCACCTCGCATGCACACTCACATCGA
GATGTGTGCCCTGGAGAAAGTCTGGCTTATAGGCTATTGTAACGAAGGCA
AACATTGCCTAATCCGCACCCAGTGTGTATACTCATAAAGTGATACAGTC
TTCGAGGACAGTCTGGTTTCCAGGCTATTGTTCCAAGGCTAACATCGGTT
GATACGCATGTCGTGTGAACATGCACTCAGAATGGAATATAGTCCTTAAG
ACAGTCTGGCTTCCAGGCTATTGTAACGAAGGCTGATGCACACACGTTGT
GCACAATCAGAACGGAATTTAGGTCTCAAGACAGTCTGGCTTGGAGGCTA
TTGTAACTAAGGCTAATGCGCACACGGTGTGCACAATCATAACGGAATAT
AGGCCTCAAGACAGTCTGGTTTCCAGGCTATTGTAACGAAGGCTAACTAA
GGCTGATGCGCACACCGTGGGCACAATCAGAGCGGAATTTAGGCTTTAAG
ACAGTCTTGATTTCAGGCTATCGTCACTAAGGCTAATGCGCACACGTTGT
GCAAAATCAGAACGGAATTTAGGCCTTAAGACAGTCTGGCTTGGAGGCTA
TTGTAACGGAGGCTAATGCGCACGTCGTGTGCACACGCAGTGGTAGATAA
TTACCACGCAGCCCCGGGTTGGGTCTGGACGTGCTGGGTCATAACAAGTG
ATTCTGATCGAGCTGGCTGGATGTTTGTTACGTTTGCTGGATAAAAAATC
AGCAGGTGCGGGCGACATGGCGCGCGGAAAAGCACAGGTGAAAGCTGGTG
GATTTTGGTGTAAATTTGTCGGTTGGAACAGAAATCGGTTTTGGCTGTCT
CACGCACAATCTCACGGTGGCTCTGCTATATGTCGATGAAGTCCTCTGAT
CACTTGATTAGCTGTGACAATATTTTGATAGCATATTATTACAGTTATAT
TTTTCTTCAAAAATTACGTGATACCCTTGCCTTTCATACTTGAGTATAGA
CTGCTACTGTATAAGTCCAAGGAGGATTCAGCGTAGGTAGTCGGAAAATC
TAGTACCTCTTATTTCGTGTATGCACACGGCAAACGTCAATCCCACCGGC
TTCTTAATTTGGCAATGTTTTGATAGCTTGATATTCATTTATATCATTTG
AACCAAAATTACGCAATCTTTTAGGTAATCCATCTATACTTGCCTTGAGG
AGCCGAATTCAAATGATAACGGTATAGGTATCGATTTTGTCGGTTAGAGT
AAGGTGAATTTAGTGTTTATATGCCTTTTTTTCACAGACGCAGGATCTCA
AGCCGATCGTCAGGCGAAAGATTCAGGTGTCGGCAAAATGGCGGAAGGTC
GATCAGGACATCTGCATCATACAGTGAGTGGTTTGCTTGTTTGTTTGTTC
ACATTGGGCAGTCAGTTGTTTTGTGCGGCAATTTGGCCTGTCTATCTCTG
TGTCACTTTCTGTGTGTGTTTCTCGGCGCGCGCGCGTGTGTGCGTGTATA
TGTGTGAGTGAGTGTGTGTGTGCGTGTGAGGGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAATGAATAAACGTCTCTCTCTCTCTG
CATGTGTCTAGGTGAGGGGGTAAAGTTTGTCATCTCTAATAGTCTCGTGG
CCGGAATAAAGGGGGGCGAGGCTTGGGCCACTTAGCTGCAATTTCTGTTT
TTGATTCACAAGATGTTTTTTTTTTCAAATAGAAGCGATCCTGGCATAAA
ATAAATGGTTGTCAGACATCCTTCTCTGTTGGTTTGTTGGCTTAGTTTCA
ACCACCTGTTGCTAGCGCGGCTGTCTGTTATAAACAACAAAGTCGACGTG
CTGATAATCATCTCCTTCCGTCTCCATGGTAACCGGATTTTGATATCAGA
CAGTTGTCCCCGTTGCTAGGCGACGTCTTAGTTGCTAGGCGACTATGCGA
TGAAGAAGAGCTAATCCGTAGAGTTAAATGAAGACCACAGGAGGATGAGA
ATGGATCGGCGACAGCTTTGTGCGAGCGTGATTACGCTTTGAGTTGCAGA
TGCGCTCCGTCTGCACCATTCATTACCCTCCTCAAGAGCGTTGTGTTTTC
GGTAGCATGTGTAGGTCTGCTTGTAGACTGTTGAATCAATTGAGAAGCTA
TTTCTGTCCTCCTCTGTCCAAGAGAAAAATAACATGTTGGCTCCCTTGCG
GCTTTCTACGGTACAACAGTGGGGCTGTCGTCCTTTGCATCTTATGTCCT
AACGTGTCTTGGTTTTCTAGGGGGAGGATTTGTTGTTGTCCAAAGAAGAA
AATATACGACATTGCGCCTTACACTCCCGGCACTTTTTTAAGCTGCTATC
TTTTAAGGGAATATTTATTACTTAAGCAAGTGTTTTTTTCTCATCACCTT
TTTAGCATATTCCGAAACGGCGACTCCCTGACGCCGCCGTCCAAGCTGCT
GTTCAAGAAAGCGTGGCTGCAGAACAAGTGCACGTGGGACGTCCTGCTGG
AGATGGTGCAGGAGAAGGTCTCACTGGACTCGGGAGCTATCAGAAAGTAC
GTGAGCAATCAATAGATTTATCGATCAGACTGCTTAATTGATTAATTTAT
TGATTGATTAATTGATTAAATAATGATGTGCATCATCGGTTGAGGATGAT
TAATGATAATAAAATCAAAGGTGATCCAAAAATACAATATATATATATAT
ATATATATAGGTATATATACACTTCTTTTCGTCAGTGACACTGCATTGTA
CTTACTGCATATAAGCAATGCAGTAAATACAATGCAGTGTCACTGACGAA
AAGTAGTGTGTGCTACTTGAAACGTCCGACCGTTTCCAAAACCATATCTA
ACTGCTATTTGGCGATTTCAGTAAATATTAAGTACCCAGTTGAGGGGTGG
CTTAACTGGAAGCTAAGGGGCAGCAAATCTTTTTGTTGCTTCGATGTACG
TGTAAAGTAGCCTGGGTGCCATCCTAGATTACTACCAGGGCTCATGATTT
CAACGCAGGAGCTCCGGGAATACTCGAGGATGGCACCCAGGCTACGCGTA
AAGTGTCCCATGAAGTTGACACTGTCTATTCATATCTTTCCTTTCCCCAG
ATTGTACCGTTTAGACGGGAAGCCGGTGCGGGATGTGGCGGATATCCAGC
ACGACTCCTACTACATCGCGGTGGGGAACGAGGGGCTGAAGAGGGTAGAG
TACGGACAGGCGCCCAAACAGGGCTTCTACTCCTCAACCAAGAGGAACAC
GTAAGTTCTTAATGTCTCATCTGGCAATGTCAAACCTGAAAAATGCGTGC
GACCTAATCGCTAACATTGTGGCAACCTCTGAAAGAGTCCTGCTGAGCCC
GACAATTGTCAGTTTTCACATGCTTGTTCTGTATACTAGCCCTGACAATT
GTCGGTTTGCAATGCTTGTTCTGTATGCTAGCCCTAATTGTCGGGTTGAG
GGTATTTCTAGAATGCGTATGTTGCACCCGCGTGGTTGTTCTAAAGTGAA
CTAAAAATGGGCAATATCAAACTAGTACCCTTTGTTTCAAAGGACCATAG
ACACTCTTATACAGTGAGTTGCCGCCGTTGGAGTTCGGCAGAAGCAGAGG
AAGGAGGAGGGCTTAGTGCAAGTTTAGCCATAATTGAAATATGAGCAAGG
TGCGTTGTAAGTTGATTCGTTGTGTGGATATGATAAGATAAACAATGGGC
ATTCTTCTCCAGTGAGTTGCCGCCGCTTGAGTTCCGGCAGAAGCAGAAGA
AGGAGGGCTACGCGCGGAAGAACAAGGAGAGCCCAAGAGAGGAGACGCAC
CGCAAGCAGGAGACGCACCGGTCGGACGGGCACCGCACCCGGCGCGAGGA
GCCGGCTGCCCGCAGGACCATCACCTACGCGCCCGCTAAGCGGAAG Coding sequence (CDS) from alignment at Sc0000011:1636410..1641905+ >transcript:BL97471_cuf1 ID=transcript:BL97471_cuf1|Name=transcript:BL97471_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3120bp|location=Sequence derived from alignment at Sc0000011:1636410..1641905+ (Branchiostoma lanceolatum)
CCTTATTCTTTCCGCTTCTCTCCGTTTAAGTCCGAATCTCCTGAAGGGAT
GGATGTAATAGAGACGCAGGATCTCAAGCCGATCGTCAGGCGAAAGATTC
AGGTGTCGGCAAAATGGCGGAAGGTCGATCAGGACATCTGCATCATACAC
ATATTCCGAAACGGCGACTCCCTGACGCCGCCGTCCAAGCTGCTGTTCAA
GAAAGCGTGGCTGCAGAACAAGTGCACGTGGGACGTCCTGCTGGAGATGG
TGCAGGAGAAGGTCTCACTGGACTCGGGAGCTATCAGAAAATTGTACCGT
TTAGACGGGAAGCCGGTGCGGGATGTGGCGGATATCCAGCACGACTCCTA
CTACATCGCGGTGGGGAACGAGGGGCTGAAGAGGGTAGAGTACGGACAGG
CGCCCAAACAGGGCTTCTACTCCTCAACCAAGAGGAACACTGAGTTGCCG
CCGCTTGAGTTCCGGCAGAAGCAGAAGAAGGAGGGCTACGCGCGGAAGAA
CAAGGAGAGCCCAAGAGAGGAGACGCACCGCAAGCAGGAGACGCACCGGT
CGGACGGGCACCGCACCCGGCGCGAGGAGCCGGCTGCCCGCAGGACCATC
ACCTACGCGCCCGCTAAGCGGAAGCCTTATTCTTTCCGCTTCTCTCCGTT
TAAGTCCGAATCTCCTGAAGGGATGGATGTAATAGAGACGCAGGATCTCA
AGCCGATCGTCAGGCGAAAGATTCAGGTGTCGGCAAAATGGCGGAAGGTC
GATCAGGACATCTGCATCATACACATATTCCGAAACGGCGACTCCCTGAC
GCCGCCGTCCAAGCTGCTGTTCAAGAAAGCGTGGCTGCAGAACAAGTGCA
CGTGGGACGTCCTGCTGGAGATGGTGCAGGAGAAGGTCTCACTGGACTCG
GGAGCTATCAGAAAATTGTACCGTTTAGACGGGAAGCCGGTGCGGGATGT
GGCGGATATCCAGCACGACTCCTACTACATCGCGGTGGGGAACGAGGGGC
TGAAGAGGGTAGAGTACGGACAGGCGCCCAAACAGGGCTTCTACTCCTCA
ACCAAGAGGAACACTGAGTTGCCGCCGCTTGAGTTCCGGCAGAAGCAGAA
GAAGGAGGGCTACGCGCGGAAGAACAAGGAGAGCCCAAGAGAGGAGACGC
ACCGCAAGCAGGAGACGCACCGGTCGGACGGGCACCGCACCCGGCGCGAG
GAGCCGGCTGCCCGCAGGACCATCACCTACGCGCCCGCTAAGCGGAAGCC
TTATTCTTTCCGCTTCTCTCCGTTTAAGTCCGAATCTCCTGAAGGGATGG
ATGTAATAGAGACGCAGGATCTCAAGCCGATCGTCAGGCGAAAGATTCAG
GTGTCGGCAAAATGGCGGAAGGTCGATCAGGACATCTGCATCATACACAT
ATTCCGAAACGGCGACTCCCTGACGCCGCCGTCCAAGCTGCTGTTCAAGA
AAGCGTGGCTGCAGAACAAGTGCACGTGGGACGTCCTGCTGGAGATGGTG
CAGGAGAAGGTCTCACTGGACTCGGGAGCTATCAGAAAATTGTACCGTTT
AGACGGGAAGCCGGTGCGGGATGTGGCGGATATCCAGCACGACTCCTACT
ACATCGCGGTGGGGAACGAGGGGCTGAAGAGGGTAGAGTACGGACAGGCG
CCCAAACAGGGCTTCTACTCCTCAACCAAGAGGAACACTGAGTTGCCGCC
GCTTGAGTTCCGGCAGAAGCAGAAGAAGGAGGGCTACGCGCGGAAGAACA
AGGAGAGCCCAAGAGAGGAGACGCACCGCAAGCAGGAGACGCACCGGTCG
GACGGGCACCGCACCCGGCGCGAGGAGCCGGCTGCCCGCAGGACCATCAC
CTACGCGCCCGCTAAGCGGAAGCCTTATTCTTTCCGCTTCTCTCCGTTTA
AGTCCGAATCTCCTGAAGGGATGGATGTAATAGAGACGCAGGATCTCAAG
CCGATCGTCAGGCGAAAGATTCAGGTGTCGGCAAAATGGCGGAAGGTCGA
TCAGGACATCTGCATCATACACATATTCCGAAACGGCGACTCCCTGACGC
CGCCGTCCAAGCTGCTGTTCAAGAAAGCGTGGCTGCAGAACAAGTGCACG
TGGGACGTCCTGCTGGAGATGGTGCAGGAGAAGGTCTCACTGGACTCGGG
AGCTATCAGAAAATTGTACCGTTTAGACGGGAAGCCGGTGCGGGATGTGG
CGGATATCCAGCACGACTCCTACTACATCGCGGTGGGGAACGAGGGGCTG
AAGAGGGTAGAGTACGGACAGGCGCCCAAACAGGGCTTCTACTCCTCAAC
CAAGAGGAACACTGAGTTGCCGCCGCTTGAGTTCCGGCAGAAGCAGAAGA
AGGAGGGCTACGCGCGGAAGAACAAGGAGAGCCCAAGAGAGGAGACGCAC
CGCAAGCAGGAGACGCACCGGTCGGACGGGCACCGCACCCGGCGCGAGGA
GCCGGCTGCCCGCAGGACCATCACCTACGCGCCCGCTAAGCGGAAGCCTT
ATTCTTTCCGCTTCTCTCCGTTTAAGTCCGAATCTCCTGAAGGGATGGAT
GTAATAGAGACGCAGGATCTCAAGCCGATCGTCAGGCGAAAGATTCAGGT
GTCGGCAAAATGGCGGAAGGTCGATCAGGACATCTGCATCATACACATAT
TCCGAAACGGCGACTCCCTGACGCCGCCGTCCAAGCTGCTGTTCAAGAAA
GCGTGGCTGCAGAACAAGTGCACGTGGGACGTCCTGCTGGAGATGGTGCA
GGAGAAGGTCTCACTGGACTCGGGAGCTATCAGAAAATTGTACCGTTTAG
ACGGGAAGCCGGTGCGGGATGTGGCGGATATCCAGCACGACTCCTACTAC
ATCGCGGTGGGGAACGAGGGGCTGAAGAGGGTAGAGTACGGACAGGCGCC
CAAACAGGGCTTCTACTCCTCAACCAAGAGGAACACTGAGTTGCCGCCGC
TTGAGTTCCGGCAGAAGCAGAAGAAGGAGGGCTACGCGCGGAAGAACAAG
GAGAGCCCAAGAGAGGAGACGCACCGCAAGCAGGAGACGCACCGGTCGGA
CGGGCACCGCACCCGGCGCGAGGAGCCGGCTGCCCGCAGGACCATCACCT
ACGCGCCCGCTAAGCGGAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000011 | genome | Sc0000011:1636410..1641905 + |
Properties
| Property Name | Value |
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| Transcript id | BL97471_cuf1 |
| Biotype | protein_coding |
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