|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97442_cuf0 >transcript:BL97442_cuf0-protein ID=transcript:BL97442_cuf0-protein|Name=transcript:BL97442_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=336bp
MDDGKPFKLREAKHDDYEAVMKMSSIDTFRDGFDYLPAKFHQYVDDPDVF
VIVTEKSDSLVAISVYMFNDDGEALLVKTARQNPNYKGMGASRRMRQATP
MLFKDFLLQRCTPATLVQGVVEAGRMDARKLVLRHLGFTKDKEKCNFDVM
YFQSDVSAIQSGLTSSNTTYLPPLTPYRHPDLHRLLPPAFSAAVLPEGHV
LVDWDPYSISEANMKKFVEAGCYILVDPTEPVAKSLSFGGSYMTPRGRVY
HMDIHCKDEALCKAHIKNHVKIACSQYTGMKTFCIMVIDQTLKETVLKYC
VENLTLCHLPHDHTYTLYETDFTTLVKAAIGIKAKY Run BLAST on NCBI mRNA from alignment at Sc0000010:862571..866744+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97442_cuf0 ID=transcript:BL97442_cuf0|Name=transcript:BL97442_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4174bp|location=Sequence derived from alignment at Sc0000010:862571..866744+ (Branchiostoma lanceolatum)
GCCTTTGGACTTTGCCCGTTCCTTCCAAGTCGCCCTTAAGTCGGTAGGTG
GCGTTGTGCAATCTTGTAGTGCGTAAACACCTCTTCTAGATTGTGATTCG
AGGGTGGTGAACTCTTCAACTGTCTTGGTCTGTACATTGTTTGGTTTGTA
CATTTTAGAAACTGAAATTCACACCATACAGGCCTCTGCTTAAAATGCAC
CCAGAATAAAGCAGGACGAAAGTCGTCTATAACAATAGTGAATAGGGTTC
AAAGGTCAAGGTGCAGGGCGAAAATTGTGAGTGAGGTGTCCATCCATAAC
GGCGAAGGGTGGCGGCAACTTAACTGTGCGATTTTAACAAGCCACACAGA
GAAGTACGATGGTAAGTGGAGGTTTGCCAAACATTTCCTTCTAACAAATT
CACCTCTATACATCGATGAAGGTTAGACATCCATGAGTAACTGCTTTTAA
AGCGTCGATCAGGGACATTAGTAGGGCGTCTAGTAGGACCATGGTAGCAG
ACAATCTTTTTACTTCCGCCTTCTAATATATGGTCTGCTACAGTACCGGT
CGTAGGATCTACAGTTAATGATTGGAAAGTAGTCTTTATAAGATCAAATA
TCAGTTATACCGACAAAGCAAAAAAAAATCTTAGTGATCTCTACTGAAAC
CTCATATCGTAGGACGACGGCAAGCCGTTTAAATTGAGAGAAGCGAAGCA
TGACGATTACGAGGCGGTGATGAAAATGTCGTCTATAGACACCTTCCGTG
ACGGTTTCGACTACCTGCCAGCCAAGTTTCACCAGTATGTGGATGATCCG
GACGTTTTCGTGATTGTAACAGAAAAAAGCGACAGCTTGGTAAGTACACT
GCAATAATCTTATCTACTGATATACGATATTAGACTTTTTAGGCTGGGCC
TTGATCTGAGATAAACAAACCCGTGTTCCCGATTTAAAATGCGCATTTAG
GCTGATGTACTTTGGATAATATGTTGAAGCTGAAGGCCACTGAGGCATAA
AAACACGTCTGTACAATGTAACGTTACATGTATCAAGCATGGTCTGGACA
AGAACTGTTTGCAAGCAAGGGACCTCTACATTGACCTCGCATGCGTAGTT
CAAACCGTGAACCGATGCAAATTATAACCGCAGATATAGATGTCACAGCC
GAACAGTTTCAACATGGGGATACACAAATTTAAAAGGAAAGGAAACCACA
GAAAATTAAGAATCAAATTAAAACGTGATTGTAGACATTCTCACATTATC
AAAAGGACGTCGTTATCGGTTTTTTGTGTTGTTGCACATTACTGGACAAA
TATCCACTGTGTATACCACTCACAAAAGACTATTCCATGCAGGTAGCGAT
CAGCGTTTACATGTTTAACGACGATGGTGAAGCTCTACTGGTGAAAACCG
CTCGTCAAAACCCCAATTATAAAGGAATGGGTGCCTCTCGTCGCATGAGA
CAGGCCACTCCGATGCTTTTCAAGGATTTCCTACTCCAGCGATGTACGCC
GGCAACTTTGGTACAAGGTGTTGTTGAAGCTGGCCGGATGGATGCTCGCA
AACTTGTCCTGCGGCACTTGGGGTTCACTAAGGACAAGGAGAAGTGCAAC
TTTGTAAGTACATATTATCATGTGGGTTATGTGGTGTAATGGCAGAGCGT
TCGGCTCAGAACCAAGTGGTCCTGGGTTCGAATCCTGTCATGTCACCGAT
CTTGTGCATCTTGGAAAGGCACTTTACACGACTTGCCTCACTCCATCCAG
GTGTGAATGGGTACCTGCCAGGTTGGGGAAGGTCGTATTGAGGTCACCTG
GTGGCGCCGAATGGCAGCCGCCCAAACCCTTGCGACAGTGCCACAAAATG
CAAGTGTGGAACAAATATGTATGTGTTGACCATGTGTATTATGTGATTGT
AAACCCTGCACCAATTCAGAACTAGATCGGGTTTTATTCATCCGCGTTGA
TAGTGAGGTGTCCCTTCACCCGAGATTGACCTTTGTAGTGTTCTGTGGCT
GTTGTTTTCTATGCCTCGCACCGTGGATCATTACAGAAACCTAAGTACTA
GAATGTTCTTTGTAATTAGCTCGATTATACGCTAGGTTTTCCTCTTTCTG
AAAACATCAGTCGTTTCAGATTTTTTTACAAGTTTAGCCAAGTTTTGCGC
ATCATTTTTGACGTGGAAATAATGTTGTCTTCTTCTAATTCACCAAAATT
AGAGAGGTTGAAGAAACAAAACTCAATTGGTCTTGTAGCGGAAGAGATAT
ACTTTCATCCCTTACATAGTTGATTTACTTTGGAATGATTTCCTGGAAGA
GTCGGTAGCTAGACTAGAGGATCGCGGTGCAGCCTCGAATTGAAACCCCA
AGTAAACTGGGGTGTGCTCCCTTAATTGTGATGATTCATGATTCCCAAAG
AATGGGTGACCAAGAAGGATAAGTGTTACTGTATGAGGTCTAGTGGAATG
TGTTTTGTCATGTCACCCGTATATAAAGGACGCACGAGTGTTGGTTGCGT
TTTAGTTATGTCCTTTCCTTTTCAGGATGTAATGTACTTTCAGTCTGACG
TGTCTGCCATCCAGAGTGGTCTCACATCAAGCAACACGACCTACCTTCCA
CCGCTCACTCCCTACCGGCACCCCGACCTCCACCGCCTGCTGCCGCCCGC
CTTCTCAGCTGCCGTCCTGCCTGAAGGCCACGTACTTGTTGACTGGGATC
CGTACAGTATTTCTGAGGCCAATATGAAGAAGTTTGTAGAAGCGGGCTGC
TACATCCTGGTCGACCCGACCGAACCGGTCGCCAAGAGTCTTAGTTTCGG
TGGAAGTTACATGACTCCTCGAGGCAGGGTGTATCACATGGACATACACT
GTAAGGACGAGGCTTTATGTAAGGCTCACATCAAAAACCACGTGAAGATC
GCCTGTAGTCAGTATACAGGCATGAAAACCTTCTGTATCATGGTGATAGA
CCAAACTTTGAAGGAAACAGTCCTGAAATATTGTGTAGAAAATCTGACCC
TCTGTCACCTGCCCCACGATCACACCTATACTCTGTATGAAACAGATTTC
ACCACCTTAGTTAAAGCTGCGATTGGAATCAAAGCTAAGTACTAGGCAGA
AAGCACTGATGATGTGGTGAAAAGAAGAAAACTTGAACAAATAATATCAG
ACCGTTAGGATTGTCATATTTCTTGTTCGATATTTTGTTTAAGACGGTCC
ATAGTCATTTAATTCTAATATCAACATTGATATTTTGTCCGTGATTAGTT
TCATCAGGTTGGTAAGTCACTGAATAAAAAGACTCTTTTTACACAACCAA
GAGATTTATTCCACCGACGTTTCGGAATGGGAATGCATCTCATTATGTAT
AAGCAGCAACACCTGTGCTGCATTGCCATGTGAACCAGTCAGAATTGCCA
TCAAGAAGGTGACAGACGGTCACCGAAACGTCAGTGGAATAAATCTCTTG
GTTGTGTAAAAAGAGTATCTTTATTGATGGATATTTTGTGTTTGCAATAT
TTAAATTCTTCCATATCTACTCAATTTCTGTTTTCCATAACTACAAGTCA
AGTCAATTCAAAATTTATTGCAAACCAATTGTAACAGGTGTAAGGTAAGG
GGAAGTGTAATCTACACTTACATTCTAAACTATACAACATCGATAGCAGA
CACAGTTAGGCGTTGTATGTCTACTGTTCAGCTACATATGTTGATATTCG
CTACTTGCAGTTTATATTTGCATGGAGGTATAAGTGTATTCCACTAGATC
TAAAGAAACATGAAGTTGCCTCACTCGGGAGAACATATGGGTCTAGTCCA
TGGCTGTGAGCTTTTTGATCAGATGCGGAGTAGTAGATTAACATGAGTCT
CTATTCCTGATGAAATAACGTGTGATTATTAACGTTGCACGTACATTGTG
TGTAGTTATGTAGCTGCGGATAAGTGGAACTGCAGGAGTCGATTTCGTTT
CCAACTTTGTTACTTTGAAAGTAGAATTCTAACATTTAACTTGTATTTCT
ATTTTGTACTTTGTAGTTGACCGCACGAAGGTCACTCTACTTGTTGTCGT
GTCAATAAAGCTTCTTCTATACAACATACCATGTCACGGAAGGGAAACAT
ATTGTTTTTACTTTGTTCCTTCCTCTTCCTATTCTTCTCAAAACAAATGA
GGTCAATGACCTTGACCAGACGGC Coding sequence (CDS) from alignment at Sc0000010:862571..866744+ >transcript:BL97442_cuf0 ID=transcript:BL97442_cuf0|Name=transcript:BL97442_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4044bp|location=Sequence derived from alignment at Sc0000010:862571..866744+ (Branchiostoma lanceolatum)
ATGGACGACGGCAAGCCGTTTAAATTGAGAGAAGCGAAGCATGACGATTA
CGAGGCGGTGATGAAAATGTCGTCTATAGACACCTTCCGTGACGGTTTCG
ACTACCTGCCAGCCAAGTTTCACCAGTATGTGGATGATCCGGACGTTTTC
GTGATTGTAACAGAAAAAAGCGACAGCTTGGTAGCGATCAGCGTTTACAT
GTTTAACGACGATGGTGAAGCTCTACTGGTGAAAACCGCTCGTCAAAACC
CCAATTATAAAGGAATGGGTGCCTCTCGTCGCATGAGACAGGCCACTCCG
ATGCTTTTCAAGGATTTCCTACTCCAGCGATGTACGCCGGCAACTTTGGT
ACAAGGTGTTGTTGAAGCTGGCCGGATGGATGCTCGCAAACTTGTCCTGC
GGCACTTGGGGTTCACTAAGGACAAGGAGAAGTGCAACTTTGATGTAATG
TACTTTCAGTCTGACGTGTCTGCCATCCAGAGTGGTCTCACATCAAGCAA
CACGACCTACCTTCCACCGCTCACTCCCTACCGGCACCCCGACCTCCACC
GCCTGCTGCCGCCCGCCTTCTCAGCTGCCGTCCTGCCTGAAGGCCACGTA
CTTGTTGACTGGGATCCGTACAGTATTTCTGAGGCCAATATGAAGAAGTT
TGTAGAAGCGGGCTGCTACATCCTGGTCGACCCGACCGAACCGGTCGCCA
AGAGTCTTAGTTTCGGTGGAAGTTACATGACTCCTCGAGGCAGGGTGTAT
CACATGGACATACACTGTAAGGACGAGGCTTTATGTAAGGCTCACATCAA
AAACCACGTGAAGATCGCCTGTAGTCAGTATACAGGCATGAAAACCTTCT
GTATCATGGTGATAGACCAAACTTTGAAGGAAACAGTCCTGAAATATTGT
GTAGAAAATCTGACCCTCTGTCACCTGCCCCACGATCACACCTATACTCT
GTATGAAACAGATTTCACCACCTTAGTTAAAGCTGCGATTGGAATCAAAG
CTAAGTACTAGATGGACGACGGCAAGCCGTTTAAATTGAGAGAAGCGAAG
CATGACGATTACGAGGCGGTGATGAAAATGTCGTCTATAGACACCTTCCG
TGACGGTTTCGACTACCTGCCAGCCAAGTTTCACCAGTATGTGGATGATC
CGGACGTTTTCGTGATTGTAACAGAAAAAAGCGACAGCTTGGTAGCGATC
AGCGTTTACATGTTTAACGACGATGGTGAAGCTCTACTGGTGAAAACCGC
TCGTCAAAACCCCAATTATAAAGGAATGGGTGCCTCTCGTCGCATGAGAC
AGGCCACTCCGATGCTTTTCAAGGATTTCCTACTCCAGCGATGTACGCCG
GCAACTTTGGTACAAGGTGTTGTTGAAGCTGGCCGGATGGATGCTCGCAA
ACTTGTCCTGCGGCACTTGGGGTTCACTAAGGACAAGGAGAAGTGCAACT
TTGATGTAATGTACTTTCAGTCTGACGTGTCTGCCATCCAGAGTGGTCTC
ACATCAAGCAACACGACCTACCTTCCACCGCTCACTCCCTACCGGCACCC
CGACCTCCACCGCCTGCTGCCGCCCGCCTTCTCAGCTGCCGTCCTGCCTG
AAGGCCACGTACTTGTTGACTGGGATCCGTACAGTATTTCTGAGGCCAAT
ATGAAGAAGTTTGTAGAAGCGGGCTGCTACATCCTGGTCGACCCGACCGA
ACCGGTCGCCAAGAGTCTTAGTTTCGGTGGAAGTTACATGACTCCTCGAG
GCAGGGTGTATCACATGGACATACACTGTAAGGACGAGGCTTTATGTAAG
GCTCACATCAAAAACCACGTGAAGATCGCCTGTAGTCAGTATACAGGCAT
GAAAACCTTCTGTATCATGGTGATAGACCAAACTTTGAAGGAAACAGTCC
TGAAATATTGTGTAGAAAATCTGACCCTCTGTCACCTGCCCCACGATCAC
ACCTATACTCTGTATGAAACAGATTTCACCACCTTAGTTAAAGCTGCGAT
TGGAATCAAAGCTAAGTACTAGATGGACGACGGCAAGCCGTTTAAATTGA
GAGAAGCGAAGCATGACGATTACGAGGCGGTGATGAAAATGTCGTCTATA
GACACCTTCCGTGACGGTTTCGACTACCTGCCAGCCAAGTTTCACCAGTA
TGTGGATGATCCGGACGTTTTCGTGATTGTAACAGAAAAAAGCGACAGCT
TGGTAGCGATCAGCGTTTACATGTTTAACGACGATGGTGAAGCTCTACTG
GTGAAAACCGCTCGTCAAAACCCCAATTATAAAGGAATGGGTGCCTCTCG
TCGCATGAGACAGGCCACTCCGATGCTTTTCAAGGATTTCCTACTCCAGC
GATGTACGCCGGCAACTTTGGTACAAGGTGTTGTTGAAGCTGGCCGGATG
GATGCTCGCAAACTTGTCCTGCGGCACTTGGGGTTCACTAAGGACAAGGA
GAAGTGCAACTTTGATGTAATGTACTTTCAGTCTGACGTGTCTGCCATCC
AGAGTGGTCTCACATCAAGCAACACGACCTACCTTCCACCGCTCACTCCC
TACCGGCACCCCGACCTCCACCGCCTGCTGCCGCCCGCCTTCTCAGCTGC
CGTCCTGCCTGAAGGCCACGTACTTGTTGACTGGGATCCGTACAGTATTT
CTGAGGCCAATATGAAGAAGTTTGTAGAAGCGGGCTGCTACATCCTGGTC
GACCCGACCGAACCGGTCGCCAAGAGTCTTAGTTTCGGTGGAAGTTACAT
GACTCCTCGAGGCAGGGTGTATCACATGGACATACACTGTAAGGACGAGG
CTTTATGTAAGGCTCACATCAAAAACCACGTGAAGATCGCCTGTAGTCAG
TATACAGGCATGAAAACCTTCTGTATCATGGTGATAGACCAAACTTTGAA
GGAAACAGTCCTGAAATATTGTGTAGAAAATCTGACCCTCTGTCACCTGC
CCCACGATCACACCTATACTCTGTATGAAACAGATTTCACCACCTTAGTT
AAAGCTGCGATTGGAATCAAAGCTAAGTACTAGATGGACGACGGCAAGCC
GTTTAAATTGAGAGAAGCGAAGCATGACGATTACGAGGCGGTGATGAAAA
TGTCGTCTATAGACACCTTCCGTGACGGTTTCGACTACCTGCCAGCCAAG
TTTCACCAGTATGTGGATGATCCGGACGTTTTCGTGATTGTAACAGAAAA
AAGCGACAGCTTGGTAGCGATCAGCGTTTACATGTTTAACGACGATGGTG
AAGCTCTACTGGTGAAAACCGCTCGTCAAAACCCCAATTATAAAGGAATG
GGTGCCTCTCGTCGCATGAGACAGGCCACTCCGATGCTTTTCAAGGATTT
CCTACTCCAGCGATGTACGCCGGCAACTTTGGTACAAGGTGTTGTTGAAG
CTGGCCGGATGGATGCTCGCAAACTTGTCCTGCGGCACTTGGGGTTCACT
AAGGACAAGGAGAAGTGCAACTTTGATGTAATGTACTTTCAGTCTGACGT
GTCTGCCATCCAGAGTGGTCTCACATCAAGCAACACGACCTACCTTCCAC
CGCTCACTCCCTACCGGCACCCCGACCTCCACCGCCTGCTGCCGCCCGCC
TTCTCAGCTGCCGTCCTGCCTGAAGGCCACGTACTTGTTGACTGGGATCC
GTACAGTATTTCTGAGGCCAATATGAAGAAGTTTGTAGAAGCGGGCTGCT
ACATCCTGGTCGACCCGACCGAACCGGTCGCCAAGAGTCTTAGTTTCGGT
GGAAGTTACATGACTCCTCGAGGCAGGGTGTATCACATGGACATACACTG
TAAGGACGAGGCTTTATGTAAGGCTCACATCAAAAACCACGTGAAGATCG
CCTGTAGTCAGTATACAGGCATGAAAACCTTCTGTATCATGGTGATAGAC
CAAACTTTGAAGGAAACAGTCCTGAAATATTGTGTAGAAAATCTGACCCT
CTGTCACCTGCCCCACGATCACACCTATACTCTGTATGAAACAGATTTCA
CCACCTTAGTTAAAGCTGCGATTGGAATCAAAGCTAAGTACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000010 | genome | Sc0000010:862571..866744 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97442_cuf0 |
| Biotype | protein_coding |
|
